Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21875 and ABZR87_RS21880 are separated by 231 nucleotides ABZR87_RS21880 and ABZR87_RS21885 are separated by 49 nucleotides ABZR87_RS21885 and ABZR87_RS21890 are separated by 126 nucleotides ABZR87_RS21890 and ABZR87_RS21895 are separated by 12 nucleotides
ABZR87_RS21875: ABZR87_RS21875 - M20/M25/M40 family metallo-hydrolase, at 1,286,104 to 1,287,327
_RS21875
ABZR87_RS21880: ABZR87_RS21880 - histidine phosphatase family protein, at 1,287,559 to 1,288,233
_RS21880
ABZR87_RS21885: ABZR87_RS21885 - SDR family oxidoreductase, at 1,288,283 to 1,289,047
_RS21885
ABZR87_RS21890: ABZR87_RS21890 - hypothetical protein, at 1,289,174 to 1,289,443
_RS21890
ABZR87_RS21895: ABZR87_RS21895 - LysR family transcriptional regulator, at 1,289,456 to 1,290,322
_RS21895
Position (kb) 1288
1289
1290 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1287.327 kb on + strand at 1287.327 kb on + strand at 1287.327 kb on + strand at 1287.327 kb on + strand at 1287.327 kb on + strand at 1287.327 kb on + strand at 1287.327 kb on + strand at 1287.327 kb on + strand at 1287.328 kb on - strand at 1287.328 kb on - strand at 1287.328 kb on - strand at 1287.341 kb on - strand at 1287.362 kb on + strand at 1287.362 kb on + strand at 1287.362 kb on + strand at 1287.362 kb on + strand at 1287.362 kb on + strand at 1287.362 kb on + strand at 1287.363 kb on - strand at 1287.363 kb on - strand at 1287.363 kb on - strand at 1287.363 kb on - strand at 1287.363 kb on - strand at 1287.363 kb on - strand at 1287.363 kb on - strand at 1287.461 kb on + strand at 1287.524 kb on - strand at 1287.571 kb on + strand at 1287.571 kb on + strand at 1287.571 kb on + strand at 1287.572 kb on - strand at 1287.572 kb on - strand at 1287.572 kb on - strand at 1287.572 kb on - strand at 1287.578 kb on + strand at 1287.613 kb on + strand at 1287.613 kb on + strand at 1287.613 kb on + strand at 1287.613 kb on + strand at 1287.614 kb on - strand at 1287.614 kb on - strand at 1287.665 kb on - strand, within ABZR87_RS21880 at 1287.775 kb on + strand, within ABZR87_RS21880 at 1287.775 kb on + strand, within ABZR87_RS21880 at 1287.776 kb on - strand, within ABZR87_RS21880 at 1287.776 kb on - strand, within ABZR87_RS21880 at 1287.802 kb on + strand, within ABZR87_RS21880 at 1287.802 kb on + strand, within ABZR87_RS21880 at 1287.802 kb on + strand, within ABZR87_RS21880 at 1288.138 kb on + strand, within ABZR87_RS21880 at 1288.138 kb on + strand, within ABZR87_RS21880 at 1288.138 kb on + strand, within ABZR87_RS21880 at 1288.225 kb on + strand at 1288.225 kb on + strand at 1288.226 kb on - strand at 1288.226 kb on - strand at 1288.226 kb on - strand at 1288.617 kb on - strand, within ABZR87_RS21885 at 1288.760 kb on + strand, within ABZR87_RS21885 at 1288.760 kb on + strand, within ABZR87_RS21885 at 1288.760 kb on + strand, within ABZR87_RS21885 at 1288.760 kb on + strand, within ABZR87_RS21885 at 1288.760 kb on + strand, within ABZR87_RS21885 at 1288.761 kb on - strand, within ABZR87_RS21885 at 1288.761 kb on - strand, within ABZR87_RS21885 at 1288.761 kb on - strand, within ABZR87_RS21885 at 1288.761 kb on - strand, within ABZR87_RS21885 at 1288.761 kb on - strand, within ABZR87_RS21885 at 1288.761 kb on - strand, within ABZR87_RS21885 at 1288.761 kb on - strand, within ABZR87_RS21885 at 1288.761 kb on - strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.904 kb on + strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.905 kb on - strand, within ABZR87_RS21885 at 1288.976 kb on + strand at 1288.976 kb on + strand at 1288.976 kb on + strand at 1288.976 kb on + strand at 1288.977 kb on - strand at 1288.977 kb on - strand at 1289.000 kb on + strand at 1289.001 kb on - strand at 1289.001 kb on - strand at 1289.001 kb on - strand at 1289.001 kb on - strand at 1289.001 kb on - strand at 1289.001 kb on - strand at 1289.060 kb on - strand at 1289.060 kb on - strand at 1289.060 kb on - strand at 1289.089 kb on - strand at 1289.135 kb on + strand at 1289.135 kb on + strand at 1289.135 kb on + strand at 1289.135 kb on + strand at 1289.136 kb on - strand at 1289.139 kb on + strand at 1289.149 kb on - strand at 1289.204 kb on + strand, within ABZR87_RS21890 at 1289.205 kb on - strand, within ABZR87_RS21890 at 1289.297 kb on + strand, within ABZR87_RS21890 at 1289.297 kb on + strand, within ABZR87_RS21890 at 1289.298 kb on - strand, within ABZR87_RS21890 at 1289.298 kb on - strand, within ABZR87_RS21890 at 1289.298 kb on - strand, within ABZR87_RS21890 at 1289.298 kb on - strand, within ABZR87_RS21890 at 1289.393 kb on + strand, within ABZR87_RS21890 at 1289.393 kb on + strand, within ABZR87_RS21890 at 1289.393 kb on + strand, within ABZR87_RS21890 at 1289.393 kb on + strand, within ABZR87_RS21890 at 1289.393 kb on + strand, within ABZR87_RS21890 at 1289.394 kb on - strand, within ABZR87_RS21890 at 1289.394 kb on - strand, within ABZR87_RS21890 at 1289.394 kb on - strand, within ABZR87_RS21890 at 1289.530 kb on + strand at 1289.530 kb on + strand at 1289.531 kb on - strand at 1289.531 kb on - strand at 1289.531 kb on - strand at 1289.531 kb on - strand at 1289.550 kb on + strand, within ABZR87_RS21895 at 1289.550 kb on + strand, within ABZR87_RS21895 at 1289.550 kb on + strand, within ABZR87_RS21895 at 1289.550 kb on + strand, within ABZR87_RS21895 at 1289.550 kb on + strand, within ABZR87_RS21895 at 1289.551 kb on - strand, within ABZR87_RS21895 at 1289.551 kb on - strand, within ABZR87_RS21895 at 1289.551 kb on - strand, within ABZR87_RS21895 at 1289.554 kb on - strand, within ABZR87_RS21895 at 1289.554 kb on - strand, within ABZR87_RS21895 at 1289.679 kb on + strand, within ABZR87_RS21895 at 1289.679 kb on + strand, within ABZR87_RS21895 at 1289.680 kb on - strand, within ABZR87_RS21895 at 1289.680 kb on - strand, within ABZR87_RS21895 at 1289.691 kb on + strand, within ABZR87_RS21895 at 1289.691 kb on + strand, within ABZR87_RS21895 at 1289.692 kb on - strand, within ABZR87_RS21895
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 1,287,327 + -1.0 1,287,327 + -0.5 1,287,327 + -2.8 1,287,327 + -3.8 1,287,327 + -0.7 1,287,327 + +0.5 1,287,327 + +0.4 1,287,327 + -0.6 1,287,328 - -1.8 1,287,328 - -0.5 1,287,328 - +0.8 1,287,341 - +0.8 1,287,362 + -0.9 1,287,362 + -0.1 1,287,362 + -3.0 1,287,362 + -0.3 1,287,362 + +0.0 1,287,362 + -1.6 1,287,363 - +0.9 1,287,363 - -0.6 1,287,363 - -3.8 1,287,363 - +0.4 1,287,363 - -0.3 1,287,363 - -0.0 1,287,363 - -3.0 1,287,461 + -1.4 1,287,524 - -0.6 1,287,571 + -0.3 1,287,571 + +0.9 1,287,571 + -1.5 1,287,572 - +1.3 1,287,572 - +0.7 1,287,572 - -1.2 1,287,572 - +2.3 1,287,578 + +0.5 1,287,613 + +1.3 1,287,613 + +0.5 1,287,613 + -2.1 1,287,613 + +0.8 1,287,614 - +1.4 1,287,614 - -0.0 1,287,665 - ABZR87_RS21880 0.16 +0.7 1,287,775 + ABZR87_RS21880 0.32 -0.3 1,287,775 + ABZR87_RS21880 0.32 +0.7 1,287,776 - ABZR87_RS21880 0.32 -1.5 1,287,776 - ABZR87_RS21880 0.32 -0.1 1,287,802 + ABZR87_RS21880 0.36 +1.2 1,287,802 + ABZR87_RS21880 0.36 -0.1 1,287,802 + ABZR87_RS21880 0.36 -0.0 1,288,138 + ABZR87_RS21880 0.86 -0.0 1,288,138 + ABZR87_RS21880 0.86 +0.6 1,288,138 + ABZR87_RS21880 0.86 +0.3 1,288,225 + -0.7 1,288,225 + -0.9 1,288,226 - -1.5 1,288,226 - -2.2 1,288,226 - +1.9 1,288,617 - ABZR87_RS21885 0.44 -2.1 1,288,760 + ABZR87_RS21885 0.62 +0.3 1,288,760 + ABZR87_RS21885 0.62 -0.0 1,288,760 + ABZR87_RS21885 0.62 -4.5 1,288,760 + ABZR87_RS21885 0.62 +1.3 1,288,760 + ABZR87_RS21885 0.62 +0.9 1,288,761 - ABZR87_RS21885 0.62 +2.1 1,288,761 - ABZR87_RS21885 0.62 +0.9 1,288,761 - ABZR87_RS21885 0.62 -1.9 1,288,761 - ABZR87_RS21885 0.62 -1.5 1,288,761 - ABZR87_RS21885 0.62 +0.6 1,288,761 - ABZR87_RS21885 0.62 -0.1 1,288,761 - ABZR87_RS21885 0.62 +0.6 1,288,761 - ABZR87_RS21885 0.62 -1.8 1,288,904 + ABZR87_RS21885 0.81 +1.3 1,288,904 + ABZR87_RS21885 0.81 +0.0 1,288,904 + ABZR87_RS21885 0.81 -1.3 1,288,904 + ABZR87_RS21885 0.81 +0.4 1,288,904 + ABZR87_RS21885 0.81 -0.1 1,288,904 + ABZR87_RS21885 0.81 +0.9 1,288,904 + ABZR87_RS21885 0.81 -3.3 1,288,904 + ABZR87_RS21885 0.81 -0.1 1,288,904 + ABZR87_RS21885 0.81 -0.0 1,288,904 + ABZR87_RS21885 0.81 +0.7 1,288,904 + ABZR87_RS21885 0.81 -0.1 1,288,905 - ABZR87_RS21885 0.81 -1.5 1,288,905 - ABZR87_RS21885 0.81 -0.3 1,288,905 - ABZR87_RS21885 0.81 -0.3 1,288,905 - ABZR87_RS21885 0.81 +2.0 1,288,905 - ABZR87_RS21885 0.81 +1.4 1,288,905 - ABZR87_RS21885 0.81 +0.4 1,288,905 - ABZR87_RS21885 0.81 +0.6 1,288,905 - ABZR87_RS21885 0.81 -3.0 1,288,905 - ABZR87_RS21885 0.81 +1.5 1,288,905 - ABZR87_RS21885 0.81 +0.6 1,288,905 - ABZR87_RS21885 0.81 -4.3 1,288,905 - ABZR87_RS21885 0.81 +0.9 1,288,976 + +2.3 1,288,976 + +0.2 1,288,976 + -1.9 1,288,976 + -4.0 1,288,977 - -0.5 1,288,977 - -1.2 1,289,000 + +0.2 1,289,001 - +1.9 1,289,001 - +0.1 1,289,001 - +0.5 1,289,001 - -1.3 1,289,001 - +0.8 1,289,001 - +1.4 1,289,060 - -1.8 1,289,060 - -0.8 1,289,060 - -0.2 1,289,089 - +1.1 1,289,135 + -0.5 1,289,135 + +0.2 1,289,135 + -0.7 1,289,135 + -0.4 1,289,136 - -0.6 1,289,139 + +1.0 1,289,149 - -1.7 1,289,204 + ABZR87_RS21890 0.11 +0.8 1,289,205 - ABZR87_RS21890 0.11 -3.4 1,289,297 + ABZR87_RS21890 0.46 +1.0 1,289,297 + ABZR87_RS21890 0.46 +0.8 1,289,298 - ABZR87_RS21890 0.46 -3.0 1,289,298 - ABZR87_RS21890 0.46 -0.5 1,289,298 - ABZR87_RS21890 0.46 -0.4 1,289,298 - ABZR87_RS21890 0.46 -0.3 1,289,393 + ABZR87_RS21890 0.81 +1.4 1,289,393 + ABZR87_RS21890 0.81 +0.1 1,289,393 + ABZR87_RS21890 0.81 +0.3 1,289,393 + ABZR87_RS21890 0.81 -0.1 1,289,393 + ABZR87_RS21890 0.81 +0.4 1,289,394 - ABZR87_RS21890 0.81 -3.2 1,289,394 - ABZR87_RS21890 0.81 +0.8 1,289,394 - ABZR87_RS21890 0.81 +4.1 1,289,530 + -0.6 1,289,530 + +0.2 1,289,531 - -2.9 1,289,531 - -1.0 1,289,531 - -0.7 1,289,531 - +1.5 1,289,550 + ABZR87_RS21895 0.11 -1.0 1,289,550 + ABZR87_RS21895 0.11 -1.2 1,289,550 + ABZR87_RS21895 0.11 +0.3 1,289,550 + ABZR87_RS21895 0.11 +0.8 1,289,550 + ABZR87_RS21895 0.11 +0.1 1,289,551 - ABZR87_RS21895 0.11 -0.3 1,289,551 - ABZR87_RS21895 0.11 -2.2 1,289,551 - ABZR87_RS21895 0.11 -0.9 1,289,554 - ABZR87_RS21895 0.11 +1.8 1,289,554 - ABZR87_RS21895 0.11 -0.1 1,289,679 + ABZR87_RS21895 0.26 -3.1 1,289,679 + ABZR87_RS21895 0.26 -0.0 1,289,680 - ABZR87_RS21895 0.26 -1.3 1,289,680 - ABZR87_RS21895 0.26 +0.4 1,289,691 + ABZR87_RS21895 0.27 +0.2 1,289,691 + ABZR87_RS21895 0.27 +0.6 1,289,692 - ABZR87_RS21895 0.27 +1.2
Or see this region's nucleotide sequence