Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19370 and ABZR87_RS19375 are separated by 10 nucleotides ABZR87_RS19375 and ABZR87_RS19380 overlap by 4 nucleotides
ABZR87_RS19370: ABZR87_RS19370 - hypothetical protein, at 712,406 to 713,449
_RS19370
ABZR87_RS19375: ABZR87_RS19375 - hypothetical protein, at 713,460 to 714,446
_RS19375
ABZR87_RS19380: ABZR87_RS19380 - polysaccharide deacetylase family protein, at 714,443 to 716,293
_RS19380
Position (kb) 713
714
715 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 712.629 kb on - strand, within ABZR87_RS19370 at 712.794 kb on - strand, within ABZR87_RS19370 at 713.132 kb on + strand, within ABZR87_RS19370 at 713.133 kb on - strand, within ABZR87_RS19370 at 713.133 kb on - strand, within ABZR87_RS19370 at 713.416 kb on + strand at 713.619 kb on + strand, within ABZR87_RS19375 at 713.619 kb on + strand, within ABZR87_RS19375 at 713.620 kb on - strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.950 kb on - strand, within ABZR87_RS19375 at 713.950 kb on - strand, within ABZR87_RS19375 at 714.021 kb on + strand, within ABZR87_RS19375 at 714.021 kb on + strand, within ABZR87_RS19375 at 714.085 kb on - strand, within ABZR87_RS19375 at 714.091 kb on - strand, within ABZR87_RS19375 at 714.177 kb on + strand, within ABZR87_RS19375 at 714.178 kb on - strand, within ABZR87_RS19375 at 714.623 kb on + strand at 714.623 kb on + strand at 714.624 kb on - strand at 714.830 kb on + strand, within ABZR87_RS19380 at 714.831 kb on - strand, within ABZR87_RS19380 at 714.831 kb on - strand, within ABZR87_RS19380 at 714.864 kb on - strand, within ABZR87_RS19380 at 714.864 kb on - strand, within ABZR87_RS19380 at 714.908 kb on + strand, within ABZR87_RS19380 at 714.909 kb on - strand, within ABZR87_RS19380 at 714.917 kb on + strand, within ABZR87_RS19380 at 714.917 kb on + strand, within ABZR87_RS19380 at 714.991 kb on + strand, within ABZR87_RS19380 at 715.064 kb on + strand, within ABZR87_RS19380 at 715.194 kb on - strand, within ABZR87_RS19380 at 715.194 kb on - strand, within ABZR87_RS19380 at 715.241 kb on + strand, within ABZR87_RS19380 at 715.242 kb on - strand, within ABZR87_RS19380 at 715.242 kb on - strand, within ABZR87_RS19380 at 715.242 kb on - strand, within ABZR87_RS19380 at 715.242 kb on - strand, within ABZR87_RS19380 at 715.257 kb on + strand, within ABZR87_RS19380 at 715.258 kb on - strand, within ABZR87_RS19380 at 715.258 kb on - strand, within ABZR87_RS19380 at 715.339 kb on + strand, within ABZR87_RS19380
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 712,629 - ABZR87_RS19370 0.21 -3.9 712,794 - ABZR87_RS19370 0.37 +1.9 713,132 + ABZR87_RS19370 0.70 +1.7 713,133 - ABZR87_RS19370 0.70 +0.8 713,133 - ABZR87_RS19370 0.70 +0.9 713,416 + +1.7 713,619 + ABZR87_RS19375 0.16 -4.0 713,619 + ABZR87_RS19375 0.16 -2.1 713,620 - ABZR87_RS19375 0.16 -2.6 713,949 + ABZR87_RS19375 0.50 -1.4 713,949 + ABZR87_RS19375 0.50 +0.2 713,949 + ABZR87_RS19375 0.50 +2.3 713,950 - ABZR87_RS19375 0.50 -2.0 713,950 - ABZR87_RS19375 0.50 -2.7 714,021 + ABZR87_RS19375 0.57 -0.5 714,021 + ABZR87_RS19375 0.57 +1.9 714,085 - ABZR87_RS19375 0.63 -0.4 714,091 - ABZR87_RS19375 0.64 +0.4 714,177 + ABZR87_RS19375 0.73 +1.0 714,178 - ABZR87_RS19375 0.73 +1.9 714,623 + +0.8 714,623 + -3.2 714,624 - -3.3 714,830 + ABZR87_RS19380 0.21 -1.3 714,831 - ABZR87_RS19380 0.21 +0.0 714,831 - ABZR87_RS19380 0.21 -0.4 714,864 - ABZR87_RS19380 0.23 +0.2 714,864 - ABZR87_RS19380 0.23 +0.2 714,908 + ABZR87_RS19380 0.25 +0.9 714,909 - ABZR87_RS19380 0.25 +1.5 714,917 + ABZR87_RS19380 0.26 -2.6 714,917 + ABZR87_RS19380 0.26 +1.2 714,991 + ABZR87_RS19380 0.30 +0.3 715,064 + ABZR87_RS19380 0.34 -0.5 715,194 - ABZR87_RS19380 0.41 +0.2 715,194 - ABZR87_RS19380 0.41 +0.8 715,241 + ABZR87_RS19380 0.43 -2.1 715,242 - ABZR87_RS19380 0.43 +2.4 715,242 - ABZR87_RS19380 0.43 +0.8 715,242 - ABZR87_RS19380 0.43 +0.8 715,242 - ABZR87_RS19380 0.43 -0.4 715,257 + ABZR87_RS19380 0.44 +1.2 715,258 - ABZR87_RS19380 0.44 -1.2 715,258 - ABZR87_RS19380 0.44 -1.5 715,339 + ABZR87_RS19380 0.48 +0.2
Or see this region's nucleotide sequence