Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18935

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18930 and ABZR87_RS18935 are separated by 57 nucleotidesABZR87_RS18935 and ABZR87_RS18940 are separated by 9 nucleotides ABZR87_RS18930: ABZR87_RS18930 - porin, at 603,249 to 604,382 _RS18930 ABZR87_RS18935: ABZR87_RS18935 - TauD/TfdA family dioxygenase, at 604,440 to 605,288 _RS18935 ABZR87_RS18940: ABZR87_RS18940 - quinone oxidoreductase, at 605,298 to 606,278 _RS18940 Position (kb) 604 605 606Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 603.496 kb on + strand, within ABZR87_RS18930at 603.496 kb on + strand, within ABZR87_RS18930at 603.532 kb on + strand, within ABZR87_RS18930at 603.533 kb on - strand, within ABZR87_RS18930at 603.553 kb on + strand, within ABZR87_RS18930at 603.553 kb on + strand, within ABZR87_RS18930at 603.643 kb on + strand, within ABZR87_RS18930at 603.644 kb on - strand, within ABZR87_RS18930at 603.718 kb on + strand, within ABZR87_RS18930at 603.719 kb on - strand, within ABZR87_RS18930at 603.761 kb on - strand, within ABZR87_RS18930at 603.904 kb on + strand, within ABZR87_RS18930at 603.904 kb on + strand, within ABZR87_RS18930at 603.905 kb on - strand, within ABZR87_RS18930at 603.905 kb on - strand, within ABZR87_RS18930at 603.905 kb on - strand, within ABZR87_RS18930at 603.905 kb on - strand, within ABZR87_RS18930at 603.961 kb on + strand, within ABZR87_RS18930at 603.961 kb on + strand, within ABZR87_RS18930at 603.973 kb on + strand, within ABZR87_RS18930at 603.974 kb on - strand, within ABZR87_RS18930at 603.974 kb on - strand, within ABZR87_RS18930at 604.019 kb on - strand, within ABZR87_RS18930at 604.069 kb on + strand, within ABZR87_RS18930at 604.069 kb on + strand, within ABZR87_RS18930at 604.070 kb on - strand, within ABZR87_RS18930at 604.277 kb on - strandat 604.277 kb on - strandat 604.304 kb on - strandat 604.442 kb on - strandat 604.498 kb on + strandat 604.499 kb on - strandat 604.513 kb on + strandat 604.514 kb on - strandat 604.580 kb on - strand, within ABZR87_RS18935at 604.591 kb on + strand, within ABZR87_RS18935at 604.591 kb on + strand, within ABZR87_RS18935at 604.591 kb on + strand, within ABZR87_RS18935at 604.591 kb on + strand, within ABZR87_RS18935at 604.592 kb on - strand, within ABZR87_RS18935at 604.592 kb on - strand, within ABZR87_RS18935at 604.592 kb on - strand, within ABZR87_RS18935at 604.592 kb on - strand, within ABZR87_RS18935at 604.592 kb on - strand, within ABZR87_RS18935at 604.676 kb on - strand, within ABZR87_RS18935at 604.708 kb on + strand, within ABZR87_RS18935at 604.708 kb on + strand, within ABZR87_RS18935at 604.708 kb on + strand, within ABZR87_RS18935at 604.708 kb on + strand, within ABZR87_RS18935at 604.708 kb on + strand, within ABZR87_RS18935at 604.709 kb on - strand, within ABZR87_RS18935at 604.709 kb on - strand, within ABZR87_RS18935at 604.889 kb on - strand, within ABZR87_RS18935at 605.041 kb on + strand, within ABZR87_RS18935at 605.041 kb on + strand, within ABZR87_RS18935at 605.042 kb on - strand, within ABZR87_RS18935at 605.042 kb on - strand, within ABZR87_RS18935at 605.377 kb on + strandat 605.377 kb on + strandat 605.378 kb on - strandat 605.470 kb on + strand, within ABZR87_RS18940at 605.470 kb on + strand, within ABZR87_RS18940at 605.471 kb on - strand, within ABZR87_RS18940at 605.498 kb on - strand, within ABZR87_RS18940at 605.701 kb on + strand, within ABZR87_RS18940at 605.702 kb on - strand, within ABZR87_RS18940at 605.702 kb on - strand, within ABZR87_RS18940at 605.869 kb on + strand, within ABZR87_RS18940at 605.870 kb on - strand, within ABZR87_RS18940at 605.887 kb on + strand, within ABZR87_RS18940at 605.993 kb on - strand, within ABZR87_RS18940at 606.125 kb on - strand, within ABZR87_RS18940at 606.142 kb on + strand, within ABZR87_RS18940at 606.142 kb on + strand, within ABZR87_RS18940at 606.142 kb on + strand, within ABZR87_RS18940at 606.142 kb on + strand, within ABZR87_RS18940at 606.143 kb on - strand, within ABZR87_RS18940at 606.143 kb on - strand, within ABZR87_RS18940at 606.282 kb on + strandat 606.282 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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603,496 + ABZR87_RS18930 0.22 +1.2
603,496 + ABZR87_RS18930 0.22 -0.8
603,532 + ABZR87_RS18930 0.25 +1.4
603,533 - ABZR87_RS18930 0.25 +0.8
603,553 + ABZR87_RS18930 0.27 +2.2
603,553 + ABZR87_RS18930 0.27 -3.6
603,643 + ABZR87_RS18930 0.35 -0.4
603,644 - ABZR87_RS18930 0.35 +1.7
603,718 + ABZR87_RS18930 0.41 -0.3
603,719 - ABZR87_RS18930 0.41 -0.0
603,761 - ABZR87_RS18930 0.45 +0.1
603,904 + ABZR87_RS18930 0.58 -0.5
603,904 + ABZR87_RS18930 0.58 -0.2
603,905 - ABZR87_RS18930 0.58 -0.7
603,905 - ABZR87_RS18930 0.58 +0.8
603,905 - ABZR87_RS18930 0.58 -2.2
603,905 - ABZR87_RS18930 0.58 -0.1
603,961 + ABZR87_RS18930 0.63 -0.3
603,961 + ABZR87_RS18930 0.63 -2.8
603,973 + ABZR87_RS18930 0.64 +1.1
603,974 - ABZR87_RS18930 0.64 -0.2
603,974 - ABZR87_RS18930 0.64 -1.5
604,019 - ABZR87_RS18930 0.68 -2.5
604,069 + ABZR87_RS18930 0.72 -0.1
604,069 + ABZR87_RS18930 0.72 -3.8
604,070 - ABZR87_RS18930 0.72 +2.3
604,277 - -1.0
604,277 - -1.1
604,304 - +0.4
604,442 - +1.3
604,498 + +1.4
604,499 - -0.8
604,513 + +0.4
604,514 - -2.5
604,580 - ABZR87_RS18935 0.16 +1.5
604,591 + ABZR87_RS18935 0.18 +2.0
604,591 + ABZR87_RS18935 0.18 +1.2
604,591 + ABZR87_RS18935 0.18 +1.0
604,591 + ABZR87_RS18935 0.18 +1.5
604,592 - ABZR87_RS18935 0.18 -0.0
604,592 - ABZR87_RS18935 0.18 -1.3
604,592 - ABZR87_RS18935 0.18 -4.0
604,592 - ABZR87_RS18935 0.18 +0.5
604,592 - ABZR87_RS18935 0.18 +1.2
604,676 - ABZR87_RS18935 0.28 -0.5
604,708 + ABZR87_RS18935 0.32 -0.1
604,708 + ABZR87_RS18935 0.32 +0.4
604,708 + ABZR87_RS18935 0.32 -0.1
604,708 + ABZR87_RS18935 0.32 +0.5
604,708 + ABZR87_RS18935 0.32 -0.9
604,709 - ABZR87_RS18935 0.32 +0.2
604,709 - ABZR87_RS18935 0.32 +1.1
604,889 - ABZR87_RS18935 0.53 -0.1
605,041 + ABZR87_RS18935 0.71 -1.3
605,041 + ABZR87_RS18935 0.71 -0.2
605,042 - ABZR87_RS18935 0.71 +3.0
605,042 - ABZR87_RS18935 0.71 +1.1
605,377 + -0.4
605,377 + +1.4
605,378 - -0.6
605,470 + ABZR87_RS18940 0.18 -2.3
605,470 + ABZR87_RS18940 0.18 +0.0
605,471 - ABZR87_RS18940 0.18 +2.4
605,498 - ABZR87_RS18940 0.20 +0.9
605,701 + ABZR87_RS18940 0.41 -0.0
605,702 - ABZR87_RS18940 0.41 -4.5
605,702 - ABZR87_RS18940 0.41 +0.1
605,869 + ABZR87_RS18940 0.58 +0.2
605,870 - ABZR87_RS18940 0.58 +0.3
605,887 + ABZR87_RS18940 0.60 +0.6
605,993 - ABZR87_RS18940 0.71 +0.2
606,125 - ABZR87_RS18940 0.84 -0.0
606,142 + ABZR87_RS18940 0.86 -3.3
606,142 + ABZR87_RS18940 0.86 +0.3
606,142 + ABZR87_RS18940 0.86 -0.2
606,142 + ABZR87_RS18940 0.86 -1.0
606,143 - ABZR87_RS18940 0.86 -0.6
606,143 - ABZR87_RS18940 0.86 -0.7
606,282 + +0.4
606,282 + -0.4

Or see this region's nucleotide sequence