Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16400 and ABZR87_RS16405 are separated by 102 nucleotides ABZR87_RS16405 and ABZR87_RS16410 are separated by 10 nucleotides
ABZR87_RS16400: ABZR87_RS16400 - LysR family transcriptional regulator, at 31,850 to 32,755
_RS16400
ABZR87_RS16405: ABZR87_RS16405 - HAD-IA family hydrolase, at 32,858 to 33,526
_RS16405
ABZR87_RS16410: ABZR87_RS16410 - DSD1 family PLP-dependent enzyme, at 33,537 to 34,685
_RS16410
Position (kb) 32
33
34 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 32.023 kb on + strand, within ABZR87_RS16400 at 32.165 kb on + strand, within ABZR87_RS16400 at 32.493 kb on + strand, within ABZR87_RS16400 at 32.692 kb on + strand at 32.758 kb on + strand at 32.758 kb on + strand at 32.759 kb on - strand at 32.759 kb on - strand at 32.759 kb on - strand at 32.815 kb on + strand at 32.816 kb on - strand at 32.816 kb on - strand at 32.816 kb on - strand at 32.816 kb on - strand at 32.879 kb on - strand at 33.008 kb on + strand, within ABZR87_RS16405 at 33.008 kb on + strand, within ABZR87_RS16405 at 33.009 kb on - strand, within ABZR87_RS16405 at 33.009 kb on - strand, within ABZR87_RS16405 at 33.009 kb on - strand, within ABZR87_RS16405 at 33.023 kb on + strand, within ABZR87_RS16405 at 33.023 kb on + strand, within ABZR87_RS16405 at 33.023 kb on + strand, within ABZR87_RS16405 at 33.024 kb on - strand, within ABZR87_RS16405 at 33.024 kb on - strand, within ABZR87_RS16405 at 33.038 kb on + strand, within ABZR87_RS16405 at 33.047 kb on + strand, within ABZR87_RS16405 at 33.200 kb on - strand, within ABZR87_RS16405 at 33.291 kb on - strand, within ABZR87_RS16405 at 33.378 kb on - strand, within ABZR87_RS16405 at 33.416 kb on + strand, within ABZR87_RS16405 at 33.416 kb on + strand, within ABZR87_RS16405 at 33.417 kb on - strand, within ABZR87_RS16405 at 33.417 kb on - strand, within ABZR87_RS16405 at 33.552 kb on + strand at 33.553 kb on - strand at 33.553 kb on - strand at 33.553 kb on - strand at 33.553 kb on - strand at 33.553 kb on - strand at 33.553 kb on - strand at 33.698 kb on - strand, within ABZR87_RS16410 at 33.731 kb on + strand, within ABZR87_RS16410 at 33.792 kb on + strand, within ABZR87_RS16410 at 33.792 kb on + strand, within ABZR87_RS16410 at 33.792 kb on + strand, within ABZR87_RS16410 at 34.031 kb on + strand, within ABZR87_RS16410 at 34.031 kb on + strand, within ABZR87_RS16410 at 34.071 kb on + strand, within ABZR87_RS16410 at 34.071 kb on + strand, within ABZR87_RS16410 at 34.071 kb on + strand, within ABZR87_RS16410 at 34.072 kb on - strand, within ABZR87_RS16410 at 34.254 kb on + strand, within ABZR87_RS16410 at 34.254 kb on + strand, within ABZR87_RS16410 at 34.254 kb on + strand, within ABZR87_RS16410 at 34.254 kb on + strand, within ABZR87_RS16410 at 34.254 kb on + strand, within ABZR87_RS16410 at 34.254 kb on + strand, within ABZR87_RS16410 at 34.255 kb on - strand, within ABZR87_RS16410 at 34.255 kb on - strand, within ABZR87_RS16410 at 34.255 kb on - strand, within ABZR87_RS16410 at 34.255 kb on - strand, within ABZR87_RS16410 at 34.255 kb on - strand, within ABZR87_RS16410 at 34.255 kb on - strand, within ABZR87_RS16410 at 34.478 kb on + strand, within ABZR87_RS16410 at 34.478 kb on + strand, within ABZR87_RS16410 at 34.478 kb on + strand, within ABZR87_RS16410 at 34.478 kb on + strand, within ABZR87_RS16410 at 34.479 kb on - strand, within ABZR87_RS16410 at 34.479 kb on - strand, within ABZR87_RS16410
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 32,023 + ABZR87_RS16400 0.19 +1.0 32,165 + ABZR87_RS16400 0.35 +0.3 32,493 + ABZR87_RS16400 0.71 -0.9 32,692 + -3.1 32,758 + -0.4 32,758 + +1.8 32,759 - +0.3 32,759 - -0.2 32,759 - +1.9 32,815 + -3.9 32,816 - -1.2 32,816 - +0.2 32,816 - +1.1 32,816 - -2.4 32,879 - +1.4 33,008 + ABZR87_RS16405 0.22 -1.5 33,008 + ABZR87_RS16405 0.22 -0.1 33,009 - ABZR87_RS16405 0.23 +1.8 33,009 - ABZR87_RS16405 0.23 -0.7 33,009 - ABZR87_RS16405 0.23 +0.2 33,023 + ABZR87_RS16405 0.25 -0.7 33,023 + ABZR87_RS16405 0.25 +0.4 33,023 + ABZR87_RS16405 0.25 +2.2 33,024 - ABZR87_RS16405 0.25 -1.1 33,024 - ABZR87_RS16405 0.25 +0.7 33,038 + ABZR87_RS16405 0.27 -1.9 33,047 + ABZR87_RS16405 0.28 +1.9 33,200 - ABZR87_RS16405 0.51 +1.8 33,291 - ABZR87_RS16405 0.65 -3.5 33,378 - ABZR87_RS16405 0.78 +1.0 33,416 + ABZR87_RS16405 0.83 -0.4 33,416 + ABZR87_RS16405 0.83 +1.0 33,417 - ABZR87_RS16405 0.84 +0.7 33,417 - ABZR87_RS16405 0.84 +1.0 33,552 + -0.2 33,553 - +2.0 33,553 - -0.8 33,553 - -0.7 33,553 - -0.1 33,553 - -0.3 33,553 - -0.4 33,698 - ABZR87_RS16410 0.14 +1.6 33,731 + ABZR87_RS16410 0.17 -0.1 33,792 + ABZR87_RS16410 0.22 +0.6 33,792 + ABZR87_RS16410 0.22 -2.3 33,792 + ABZR87_RS16410 0.22 -0.0 34,031 + ABZR87_RS16410 0.43 -1.1 34,031 + ABZR87_RS16410 0.43 +0.8 34,071 + ABZR87_RS16410 0.46 +1.3 34,071 + ABZR87_RS16410 0.46 -0.9 34,071 + ABZR87_RS16410 0.46 +0.2 34,072 - ABZR87_RS16410 0.47 +0.6 34,254 + ABZR87_RS16410 0.62 +0.2 34,254 + ABZR87_RS16410 0.62 -1.2 34,254 + ABZR87_RS16410 0.62 +0.6 34,254 + ABZR87_RS16410 0.62 -0.6 34,254 + ABZR87_RS16410 0.62 -2.9 34,254 + ABZR87_RS16410 0.62 -0.1 34,255 - ABZR87_RS16410 0.62 -0.3 34,255 - ABZR87_RS16410 0.62 -1.8 34,255 - ABZR87_RS16410 0.62 +0.3 34,255 - ABZR87_RS16410 0.62 -3.7 34,255 - ABZR87_RS16410 0.62 -0.6 34,255 - ABZR87_RS16410 0.62 -0.0 34,478 + ABZR87_RS16410 0.82 -0.9 34,478 + ABZR87_RS16410 0.82 -2.3 34,478 + ABZR87_RS16410 0.82 +0.4 34,478 + ABZR87_RS16410 0.82 -2.3 34,479 - ABZR87_RS16410 0.82 -0.1 34,479 - ABZR87_RS16410 0.82 +0.5
Or see this region's nucleotide sequence