Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14875 and ABZR87_RS14880 are separated by 6 nucleotides ABZR87_RS14880 and ABZR87_RS14885 are separated by 163 nucleotides ABZR87_RS14885 and ABZR87_RS14890 are separated by 180 nucleotides ABZR87_RS14890 and ABZR87_RS14895 are separated by 61 nucleotides ABZR87_RS14895 and ABZR87_RS14900 are separated by 79 nucleotides
ABZR87_RS14875: ABZR87_RS14875 - NADH-quinone oxidoreductase subunit B family protein, at 3,139,861 to 3,140,343
_RS14875
ABZR87_RS14880: ABZR87_RS14880 - NADH-quinone oxidoreductase subunit A, at 3,140,350 to 3,140,709
_RS14880
ABZR87_RS14885: ABZR87_RS14885 - tRNA-Leu, at 3,140,873 to 3,140,957
_RS14885
ABZR87_RS14890: ABZR87_RS14890 - preprotein translocase subunit SecG, at 3,141,138 to 3,141,500
_RS14890
ABZR87_RS14895: ABZR87_RS14895 - triose-phosphate isomerase, at 3,141,562 to 3,142,308
_RS14895
ABZR87_RS14900: ABZR87_RS14900 - NAD(P)H-quinone oxidoreductase, at 3,142,388 to 3,143,392
_RS14900
Position (kb)
3141
3142 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3140.974 kb on - strand at 3140.996 kb on - strand at 3140.996 kb on - strand at 3141.129 kb on + strand at 3141.130 kb on - strand at 3141.219 kb on - strand, within ABZR87_RS14890 at 3141.519 kb on - strand at 3141.519 kb on - strand at 3141.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 3,140,974 - -1.3 3,140,996 - -3.6 3,140,996 - +1.2 3,141,129 + +1.1 3,141,130 - -2.6 3,141,219 - ABZR87_RS14890 0.22 +1.8 3,141,519 - -1.5 3,141,519 - -1.1 3,141,564 - -0.7
Or see this region's nucleotide sequence