Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12285

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
2,604,473	+		ABZR87_RS12280	0.57	+0.8
2,604,473	+		ABZR87_RS12280	0.57	+0.7
2,604,473	+		ABZR87_RS12280	0.57	-0.0
2,604,474	-		ABZR87_RS12280	0.57	+0.9
2,604,474	-		ABZR87_RS12280	0.57	-3.7
2,604,474	-		ABZR87_RS12280	0.57	+0.5
2,604,482	+		ABZR87_RS12280	0.58	-3.1
2,604,482	+		ABZR87_RS12280	0.58	-0.1
2,604,482	+		ABZR87_RS12280	0.58	-1.4
2,604,482	+		ABZR87_RS12280	0.58	-1.5
2,604,482	+		ABZR87_RS12280	0.58	-0.1
2,604,483	-		ABZR87_RS12280	0.58	+0.2
2,604,483	-		ABZR87_RS12280	0.58	+1.2
2,604,483	-		ABZR87_RS12280	0.58	-0.8
2,604,483	-		ABZR87_RS12280	0.58	+1.3
2,604,483	-		ABZR87_RS12280	0.58	+0.0
2,604,483	-		ABZR87_RS12280	0.58	-0.4
2,604,483	-		ABZR87_RS12280	0.58	+1.7
2,604,483	-		ABZR87_RS12280	0.58	-0.9
2,604,483	-		ABZR87_RS12280	0.58	+0.1
2,604,483	-		ABZR87_RS12280	0.58	-3.6
2,604,485	+		ABZR87_RS12280	0.58	+0.0
2,604,485	+		ABZR87_RS12280	0.58	+1.2
2,604,486	-		ABZR87_RS12280	0.58	-2.9
2,604,486	-		ABZR87_RS12280	0.58	-0.5
2,604,486	-		ABZR87_RS12280	0.58	+0.5
2,604,486	-		ABZR87_RS12280	0.58	-0.9
2,604,486	-		ABZR87_RS12280	0.58	-0.7
2,604,486	-		ABZR87_RS12280	0.58	+0.4
2,604,486	-		ABZR87_RS12280	0.58	-0.4
2,604,486	-		ABZR87_RS12280	0.58	+0.6
2,604,486	-		ABZR87_RS12280	0.58	-2.0
2,604,486	-		ABZR87_RS12280	0.58	-0.3
2,604,806	+		ABZR87_RS12280	0.79	-0.2
2,604,807	-		ABZR87_RS12280	0.79	-0.2
2,604,807	-		ABZR87_RS12280	0.79	-2.1
2,604,807	-		ABZR87_RS12280	0.79	-1.4
2,604,807	-		ABZR87_RS12280	0.79	+1.1
2,605,178	-				-1.2
2,605,178	-				-1.4
2,605,178	-				+1.4
2,605,341	+				-1.8
2,605,341	+				+0.4
2,605,548	+				-0.9
2,605,549	-				-1.4
2,605,575	+				+1.0
2,605,575	+				+1.1
2,605,576	-				+2.3
2,605,596	+				+1.0
2,605,612	-				-1.8
2,605,876	-		ABZR87_RS12285	0.15	-3.3
2,606,007	+		ABZR87_RS12285	0.20	-0.9
2,606,007	+		ABZR87_RS12285	0.20	+1.0
2,606,008	-		ABZR87_RS12285	0.20	-0.3
2,606,145	+		ABZR87_RS12285	0.24	+0.9
2,606,145	+		ABZR87_RS12285	0.24	-3.3
2,606,145	+		ABZR87_RS12285	0.24	-0.9
2,606,218	-		ABZR87_RS12285	0.27	+0.7
2,606,218	-		ABZR87_RS12285	0.27	-1.5
2,606,218	-		ABZR87_RS12285	0.27	+0.6
2,606,260	-		ABZR87_RS12285	0.28	+2.2
2,606,296	-		ABZR87_RS12285	0.29	+0.6
2,606,305	-		ABZR87_RS12285	0.30	-1.0
2,606,305	-		ABZR87_RS12285	0.30	-2.6
2,606,349	+		ABZR87_RS12285	0.31	-0.4
2,606,349	+		ABZR87_RS12285	0.31	-0.7
2,606,349	+		ABZR87_RS12285	0.31	+1.4
2,606,350	-		ABZR87_RS12285	0.31	+0.7
2,606,350	-		ABZR87_RS12285	0.31	+0.1
2,606,407	-		ABZR87_RS12285	0.33	+0.9
2,606,487	+		ABZR87_RS12285	0.36	-0.6
2,606,487	+		ABZR87_RS12285	0.36	+0.7
2,606,487	+		ABZR87_RS12285	0.36	+0.4
2,606,488	-		ABZR87_RS12285	0.36	+1.6
2,606,497	-		ABZR87_RS12285	0.36	+0.5
2,606,547	+		ABZR87_RS12285	0.38	+0.4
2,606,548	-		ABZR87_RS12285	0.38	-0.3
2,606,620	-		ABZR87_RS12285	0.40	-0.2
2,606,842	-		ABZR87_RS12285	0.47	+0.7
2,606,881	+		ABZR87_RS12285	0.49	-1.3
2,606,881	+		ABZR87_RS12285	0.49	-0.9
2,606,919	+		ABZR87_RS12285	0.50	+0.6
2,606,952	+		ABZR87_RS12285	0.51	+0.3
2,606,952	+		ABZR87_RS12285	0.51	+1.2
2,606,952	+		ABZR87_RS12285	0.51	+2.5
2,606,953	-		ABZR87_RS12285	0.51	-0.1
2,607,078	+		ABZR87_RS12285	0.55	-0.6
2,607,078	+		ABZR87_RS12285	0.55	-0.6
2,607,078	+		ABZR87_RS12285	0.55	-1.6
2,607,079	-		ABZR87_RS12285	0.55	+0.1
2,607,079	-		ABZR87_RS12285	0.55	-2.9
2,607,093	+		ABZR87_RS12285	0.56	+0.7
2,607,093	+		ABZR87_RS12285	0.56	-0.6
2,607,094	-		ABZR87_RS12285	0.56	-0.2
2,607,258	+		ABZR87_RS12285	0.61	-0.9
2,607,259	-		ABZR87_RS12285	0.61	-4.3
2,607,259	-		ABZR87_RS12285	0.61	-1.7
2,607,259	-		ABZR87_RS12285	0.61	+0.2
2,607,259	-		ABZR87_RS12285	0.61	-0.4
2,607,259	-		ABZR87_RS12285	0.61	+0.9
2,607,259	-		ABZR87_RS12285	0.61	+0.6
2,607,259	-		ABZR87_RS12285	0.61	+0.1
2,607,435	+		ABZR87_RS12285	0.67	+0.8
2,607,478	-		ABZR87_RS12285	0.68	-2.6
2,607,480	+		ABZR87_RS12285	0.68	+0.3
2,607,481	-		ABZR87_RS12285	0.68	-0.2
2,607,526	-		ABZR87_RS12285	0.70	-1.1
2,607,526	-		ABZR87_RS12285	0.70	+0.2
2,607,526	-		ABZR87_RS12285	0.70	-1.4
2,607,604	-		ABZR87_RS12285	0.72	-2.4
2,607,681	+		ABZR87_RS12285	0.75	-0.8
2,607,681	+		ABZR87_RS12285	0.75	-1.0
2,607,681	+		ABZR87_RS12285	0.75	+0.0
2,607,682	-		ABZR87_RS12285	0.75	+3.1
2,607,732	+		ABZR87_RS12285	0.77	+0.5
2,607,810	+		ABZR87_RS12285	0.79	-1.7
2,608,020	+		ABZR87_RS12285	0.86	+0.1
2,608,020	+		ABZR87_RS12285	0.86	-0.9
2,608,020	+		ABZR87_RS12285	0.86	+0.3
2,608,021	-		ABZR87_RS12285	0.86	-1.9
2,608,021	-		ABZR87_RS12285	0.86	+1.6
2,608,021	-		ABZR87_RS12285	0.86	+1.1
2,608,022	+		ABZR87_RS12285	0.86	-0.1
2,608,022	+		ABZR87_RS12285	0.86	-1.1
2,608,023	-		ABZR87_RS12285	0.86	-2.0
2,608,047	+		ABZR87_RS12285	0.87	+0.3
2,608,177	-				+0.3
2,608,177	-				+1.1
2,608,177	-				+0.6
2,608,239	+				-0.7
2,608,488	-				-4.0
2,608,488	-				+0.7
2,608,519	+				-3.5
2,608,519	+				-1.9
2,608,520	-				+2.2
2,608,546	+				+0.0
2,608,547	-				+1.1
2,608,558	+				+1.3
2,608,558	+				+0.4
2,608,558	+				-3.1
2,608,559	-				+1.9
2,608,559	-				-0.3
2,608,561	+				-0.8
2,608,561	+				+0.4
2,608,562	-				-0.3
2,608,582	+				-4.7
2,608,582	+				+0.1
2,608,592	-				-0.9
2,608,592	-				+0.5
2,608,592	-				+1.9
2,608,690	+		ABZR87_RS12290	0.16	+0.2
2,608,691	-		ABZR87_RS12290	0.16	+0.8
2,608,691	-		ABZR87_RS12290	0.16	-1.9
2,608,691	-		ABZR87_RS12290	0.16	+0.6
2,608,691	-		ABZR87_RS12290	0.16	+0.4
2,608,852	+		ABZR87_RS12290	0.34	-0.4
2,608,852	+		ABZR87_RS12290	0.34	-2.3
2,608,876	+		ABZR87_RS12290	0.36	+0.6
2,608,876	+		ABZR87_RS12290	0.36	+1.0
2,609,111	-		ABZR87_RS12290	0.62	+1.4
2,609,111	-		ABZR87_RS12290	0.62	-3.5
2,609,153	-		ABZR87_RS12290	0.67	-0.4
2,609,153	-		ABZR87_RS12290	0.67	+0.5
2,609,434	+				+0.5
2,609,435	-				-4.2