Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02545 and ABZR87_RS02550 are separated by 37 nucleotides ABZR87_RS02550 and ABZR87_RS02555 overlap by 4 nucleotides ABZR87_RS02555 and ABZR87_RS02560 are separated by 228 nucleotides
ABZR87_RS02545: ABZR87_RS02545 - outer membrane lipid asymmetry maintenance protein MlaD, at 537,568 to 538,089
_RS02545
ABZR87_RS02550: ABZR87_RS02550 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 538,127 to 538,894
_RS02550
ABZR87_RS02555: ABZR87_RS02555 - ABC transporter ATP-binding protein, at 538,891 to 539,724
_RS02555
ABZR87_RS02560: ABZR87_RS02560 - tripartite tricarboxylate transporter substrate binding protein, at 539,953 to 540,984
_RS02560
Position (kb) 538
539
540 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 537.971 kb on + strand, within ABZR87_RS02545 at 537.972 kb on - strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.042 kb on + strand at 538.043 kb on - strand at 538.083 kb on + strand at 538.084 kb on - strand at 538.084 kb on - strand at 538.084 kb on - strand at 538.242 kb on + strand, within ABZR87_RS02550 at 538.242 kb on + strand, within ABZR87_RS02550 at 538.243 kb on - strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.395 kb on + strand, within ABZR87_RS02550 at 538.395 kb on + strand, within ABZR87_RS02550 at 538.408 kb on + strand, within ABZR87_RS02550 at 538.666 kb on - strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.684 kb on - strand, within ABZR87_RS02550 at 538.949 kb on + strand at 538.950 kb on - strand at 538.950 kb on - strand at 539.069 kb on + strand, within ABZR87_RS02555 at 539.069 kb on + strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.214 kb on - strand, within ABZR87_RS02555 at 539.376 kb on + strand, within ABZR87_RS02555 at 539.376 kb on + strand, within ABZR87_RS02555 at 539.377 kb on - strand, within ABZR87_RS02555 at 539.474 kb on + strand, within ABZR87_RS02555 at 539.474 kb on + strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.670 kb on - strand at 539.764 kb on - strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.824 kb on - strand at 539.862 kb on + strand at 539.955 kb on - strand at 540.092 kb on - strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.118 kb on + strand, within ABZR87_RS02560 at 540.119 kb on - strand, within ABZR87_RS02560 at 540.119 kb on - strand, within ABZR87_RS02560 at 540.119 kb on - strand, within ABZR87_RS02560 at 540.317 kb on + strand, within ABZR87_RS02560 at 540.410 kb on + strand, within ABZR87_RS02560 at 540.410 kb on + strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.608 kb on + strand, within ABZR87_RS02560 at 540.608 kb on + strand, within ABZR87_RS02560 at 540.609 kb on - strand, within ABZR87_RS02560 at 540.609 kb on - strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 537,971 + ABZR87_RS02545 0.77 -1.3 537,972 - ABZR87_RS02545 0.77 -1.4 537,999 + ABZR87_RS02545 0.83 -2.5 537,999 + ABZR87_RS02545 0.83 -1.1 537,999 + ABZR87_RS02545 0.83 +3.7 538,000 - ABZR87_RS02545 0.83 -0.6 538,000 - ABZR87_RS02545 0.83 -1.9 538,000 - ABZR87_RS02545 0.83 -0.5 538,000 - ABZR87_RS02545 0.83 +1.1 538,000 - ABZR87_RS02545 0.83 +1.6 538,000 - ABZR87_RS02545 0.83 -2.1 538,000 - ABZR87_RS02545 0.83 +1.3 538,000 - ABZR87_RS02545 0.83 +1.6 538,000 - ABZR87_RS02545 0.83 -2.9 538,000 - ABZR87_RS02545 0.83 +0.9 538,042 + -2.9 538,043 - -2.8 538,083 + -1.2 538,084 - -0.1 538,084 - +0.2 538,084 - +0.5 538,242 + ABZR87_RS02550 0.15 +0.9 538,242 + ABZR87_RS02550 0.15 +0.3 538,243 - ABZR87_RS02550 0.15 -1.7 538,251 + ABZR87_RS02550 0.16 -1.6 538,251 + ABZR87_RS02550 0.16 -0.8 538,251 + ABZR87_RS02550 0.16 +3.5 538,252 - ABZR87_RS02550 0.16 -1.3 538,252 - ABZR87_RS02550 0.16 -1.4 538,252 - ABZR87_RS02550 0.16 -2.6 538,395 + ABZR87_RS02550 0.35 +0.8 538,395 + ABZR87_RS02550 0.35 -2.2 538,408 + ABZR87_RS02550 0.37 +1.2 538,666 - ABZR87_RS02550 0.70 -1.8 538,683 + ABZR87_RS02550 0.72 +0.7 538,683 + ABZR87_RS02550 0.72 +0.8 538,683 + ABZR87_RS02550 0.72 +0.2 538,684 - ABZR87_RS02550 0.73 -0.7 538,949 + -0.1 538,950 - -1.0 538,950 - -1.2 539,069 + ABZR87_RS02555 0.21 -0.9 539,069 + ABZR87_RS02555 0.21 -2.1 539,070 - ABZR87_RS02555 0.21 +2.1 539,070 - ABZR87_RS02555 0.21 +0.9 539,070 - ABZR87_RS02555 0.21 +0.8 539,076 - ABZR87_RS02555 0.22 -1.1 539,076 - ABZR87_RS02555 0.22 -1.3 539,076 - ABZR87_RS02555 0.22 -0.7 539,076 - ABZR87_RS02555 0.22 -2.9 539,076 - ABZR87_RS02555 0.22 -0.3 539,076 - ABZR87_RS02555 0.22 -3.4 539,076 - ABZR87_RS02555 0.22 -2.7 539,076 - ABZR87_RS02555 0.22 +1.6 539,101 + ABZR87_RS02555 0.25 +0.9 539,101 + ABZR87_RS02555 0.25 +1.0 539,101 + ABZR87_RS02555 0.25 +1.0 539,102 - ABZR87_RS02555 0.25 -2.4 539,102 - ABZR87_RS02555 0.25 -4.0 539,102 - ABZR87_RS02555 0.25 -2.1 539,213 + ABZR87_RS02555 0.39 +1.9 539,213 + ABZR87_RS02555 0.39 +1.7 539,213 + ABZR87_RS02555 0.39 +1.7 539,213 + ABZR87_RS02555 0.39 +2.5 539,214 - ABZR87_RS02555 0.39 -2.3 539,376 + ABZR87_RS02555 0.58 +1.0 539,376 + ABZR87_RS02555 0.58 -1.6 539,377 - ABZR87_RS02555 0.58 +0.5 539,474 + ABZR87_RS02555 0.70 +2.4 539,474 + ABZR87_RS02555 0.70 +4.0 539,475 - ABZR87_RS02555 0.70 +0.6 539,475 - ABZR87_RS02555 0.70 -2.3 539,475 - ABZR87_RS02555 0.70 +4.0 539,475 - ABZR87_RS02555 0.70 +1.0 539,475 - ABZR87_RS02555 0.70 +0.8 539,475 - ABZR87_RS02555 0.70 -2.4 539,670 - +1.1 539,764 - +0.1 539,821 + +1.9 539,821 + -1.9 539,821 + -1.7 539,821 + +2.2 539,821 + -0.6 539,822 - +0.6 539,822 - +0.5 539,822 - -1.8 539,822 - +1.5 539,822 - +0.6 539,823 + -3.0 539,823 + -0.3 539,823 + +0.8 539,823 + -3.3 539,823 + +0.0 539,823 + +1.6 539,823 + -1.6 539,824 - +0.9 539,862 + -1.3 539,955 - +1.5 540,092 - ABZR87_RS02560 0.13 -1.2 540,118 + ABZR87_RS02560 0.16 -1.0 540,118 + ABZR87_RS02560 0.16 -3.6 540,118 + ABZR87_RS02560 0.16 -0.1 540,118 + ABZR87_RS02560 0.16 -3.1 540,118 + ABZR87_RS02560 0.16 +1.4 540,119 - ABZR87_RS02560 0.16 -0.7 540,119 - ABZR87_RS02560 0.16 -0.3 540,119 - ABZR87_RS02560 0.16 +0.6 540,317 + ABZR87_RS02560 0.35 +0.3 540,410 + ABZR87_RS02560 0.44 -0.1 540,410 + ABZR87_RS02560 0.44 -2.1 540,411 - ABZR87_RS02560 0.44 +0.1 540,411 - ABZR87_RS02560 0.44 -0.7 540,411 - ABZR87_RS02560 0.44 -1.7 540,608 + ABZR87_RS02560 0.63 +0.9 540,608 + ABZR87_RS02560 0.63 +0.0 540,609 - ABZR87_RS02560 0.64 -0.1 540,609 - ABZR87_RS02560 0.64 -1.7 540,666 + ABZR87_RS02560 0.69 +2.0 540,666 + ABZR87_RS02560 0.69 +2.2 540,666 + ABZR87_RS02560 0.69 -0.4 540,666 + ABZR87_RS02560 0.69 +0.0 540,666 + ABZR87_RS02560 0.69 -1.6 540,666 + ABZR87_RS02560 0.69 +0.8 540,666 + ABZR87_RS02560 0.69 -2.4 540,666 + ABZR87_RS02560 0.69 +0.8 540,666 + ABZR87_RS02560 0.69 +0.9 540,666 + ABZR87_RS02560 0.69 +0.2 540,666 + ABZR87_RS02560 0.69 -3.3 540,666 + ABZR87_RS02560 0.69 +0.6 540,666 + ABZR87_RS02560 0.69 +0.2 540,667 - ABZR87_RS02560 0.69 -1.1 540,667 - ABZR87_RS02560 0.69 -0.2 540,667 - ABZR87_RS02560 0.69 +1.1 540,667 - ABZR87_RS02560 0.69 +1.1 540,667 - ABZR87_RS02560 0.69 +1.1
Or see this region's nucleotide sequence