Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01470

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01460 and ABZR87_RS01465 overlap by 20 nucleotidesABZR87_RS01465 and ABZR87_RS01470 are separated by 10 nucleotidesABZR87_RS01470 and ABZR87_RS01475 are separated by 17 nucleotides ABZR87_RS01460: ABZR87_RS01460 - aldose 1-epimerase, at 307,001 to 307,885 _RS01460 ABZR87_RS01465: ABZR87_RS01465 - SMP-30/gluconolactonase/LRE family protein, at 307,866 to 308,780 _RS01465 ABZR87_RS01470: ABZR87_RS01470 - L-arabinose ABC transporter permease AraH, at 308,791 to 309,798 _RS01470 ABZR87_RS01475: ABZR87_RS01475 - L-arabinose ABC transporter ATP-binding protein AraG, at 309,816 to 311,336 _RS01475 Position (kb) 308 309 310Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 307.841 kb on + strandat 307.841 kb on + strandat 307.842 kb on - strandat 307.842 kb on - strandat 307.853 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.880 kb on - strandat 307.880 kb on - strandat 307.880 kb on - strandat 307.914 kb on + strandat 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.228 kb on + strand, within ABZR87_RS01465at 308.258 kb on - strand, within ABZR87_RS01465at 308.288 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.395 kb on + strand, within ABZR87_RS01465at 308.395 kb on + strand, within ABZR87_RS01465at 308.396 kb on - strand, within ABZR87_RS01465at 308.396 kb on - strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.870 kb on + strandat 308.870 kb on + strandat 308.870 kb on + strandat 308.870 kb on + strandat 308.871 kb on - strandat 308.871 kb on - strandat 308.871 kb on - strandat 309.177 kb on + strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.188 kb on + strand, within ABZR87_RS01470at 309.644 kb on + strand, within ABZR87_RS01470at 309.645 kb on - strand, within ABZR87_RS01470at 310.015 kb on + strand, within ABZR87_RS01475at 310.015 kb on + strand, within ABZR87_RS01475at 310.016 kb on - strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.074 kb on + strand, within ABZR87_RS01475at 310.074 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.509 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.754 kb on - strand, within ABZR87_RS01475

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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307,841 + +0.9
307,841 + -0.4
307,842 - -0.1
307,842 - +1.9
307,853 + -0.7
307,879 + +0.1
307,879 + +1.7
307,879 + -1.0
307,879 + +0.7
307,879 + -0.1
307,879 + -0.0
307,879 + +2.4
307,879 + -0.0
307,880 - -0.1
307,880 - -0.2
307,880 - -2.7
307,914 + +1.4
308,005 + ABZR87_RS01465 0.15 +1.0
308,005 + ABZR87_RS01465 0.15 -0.5
308,005 + ABZR87_RS01465 0.15 +1.1
308,005 + ABZR87_RS01465 0.15 -1.2
308,006 - ABZR87_RS01465 0.15 -3.7
308,006 - ABZR87_RS01465 0.15 -2.7
308,006 - ABZR87_RS01465 0.15 +2.2
308,006 - ABZR87_RS01465 0.15 -0.2
308,228 + ABZR87_RS01465 0.40 -1.1
308,258 - ABZR87_RS01465 0.43 -0.0
308,288 + ABZR87_RS01465 0.46 -0.1
308,299 + ABZR87_RS01465 0.47 +0.6
308,299 + ABZR87_RS01465 0.47 +0.2
308,299 + ABZR87_RS01465 0.47 -0.2
308,300 - ABZR87_RS01465 0.47 -0.8
308,300 - ABZR87_RS01465 0.47 +0.7
308,300 - ABZR87_RS01465 0.47 -1.4
308,300 - ABZR87_RS01465 0.47 -2.7
308,300 - ABZR87_RS01465 0.47 +0.6
308,300 - ABZR87_RS01465 0.47 -1.0
308,395 + ABZR87_RS01465 0.58 -0.0
308,395 + ABZR87_RS01465 0.58 +1.3
308,396 - ABZR87_RS01465 0.58 -4.6
308,396 - ABZR87_RS01465 0.58 -3.1
308,446 + ABZR87_RS01465 0.63 -0.4
308,446 + ABZR87_RS01465 0.63 +0.6
308,446 + ABZR87_RS01465 0.63 -0.6
308,447 - ABZR87_RS01465 0.63 -1.6
308,447 - ABZR87_RS01465 0.63 +0.5
308,447 - ABZR87_RS01465 0.63 +0.5
308,447 - ABZR87_RS01465 0.63 +0.1
308,447 - ABZR87_RS01465 0.63 +2.2
308,447 - ABZR87_RS01465 0.63 -1.7
308,447 - ABZR87_RS01465 0.63 -1.1
308,447 - ABZR87_RS01465 0.63 +0.4
308,870 + +1.7
308,870 + -0.8
308,870 + +0.1
308,870 + +0.4
308,871 - -2.2
308,871 - +1.1
308,871 - +0.4
309,177 + ABZR87_RS01470 0.38 +1.3
309,178 - ABZR87_RS01470 0.38 +0.7
309,178 - ABZR87_RS01470 0.38 +2.4
309,178 - ABZR87_RS01470 0.38 -3.3
309,178 - ABZR87_RS01470 0.38 +1.0
309,188 + ABZR87_RS01470 0.39 +0.3
309,644 + ABZR87_RS01470 0.85 +1.0
309,645 - ABZR87_RS01470 0.85 -3.0
310,015 + ABZR87_RS01475 0.13 +0.1
310,015 + ABZR87_RS01475 0.13 -1.5
310,016 - ABZR87_RS01475 0.13 -0.1
310,027 + ABZR87_RS01475 0.14 +1.6
310,027 + ABZR87_RS01475 0.14 -0.0
310,027 + ABZR87_RS01475 0.14 +0.1
310,027 + ABZR87_RS01475 0.14 -1.4
310,028 - ABZR87_RS01475 0.14 +1.2
310,028 - ABZR87_RS01475 0.14 +0.2
310,028 - ABZR87_RS01475 0.14 -0.1
310,028 - ABZR87_RS01475 0.14 -3.4
310,028 - ABZR87_RS01475 0.14 -1.4
310,074 + ABZR87_RS01475 0.17 -0.2
310,074 + ABZR87_RS01475 0.17 -2.3
310,201 + ABZR87_RS01475 0.25 -2.4
310,201 + ABZR87_RS01475 0.25 +0.1
310,201 + ABZR87_RS01475 0.25 -3.8
310,201 + ABZR87_RS01475 0.25 -3.0
310,509 + ABZR87_RS01475 0.46 -0.5
310,753 + ABZR87_RS01475 0.62 +0.7
310,753 + ABZR87_RS01475 0.62 +0.4
310,753 + ABZR87_RS01475 0.62 +0.5
310,754 - ABZR87_RS01475 0.62 -1.3

Or see this region's nucleotide sequence