Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00530

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00525 and ABZR87_RS00530 are separated by 103 nucleotidesABZR87_RS00530 and ABZR87_RS00535 are separated by 127 nucleotidesABZR87_RS00535 and ABZR87_RS00540 are separated by 8 nucleotides ABZR87_RS00525: ABZR87_RS00525 - gamma-glutamyltransferase family protein, at 107,803 to 109,431 _RS00525 ABZR87_RS00530: ABZR87_RS00530 - MFS transporter, at 109,535 to 110,851 _RS00530 ABZR87_RS00535: ABZR87_RS00535 - hypothetical protein, at 110,979 to 111,326 _RS00535 ABZR87_RS00540: ABZR87_RS00540 - 4-hydroxy-tetrahydrodipicolinate synthase, at 111,335 to 112,219 _RS00540 Position (kb) 109 110 111Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 108.733 kb on + strand, within ABZR87_RS00525at 108.733 kb on + strand, within ABZR87_RS00525at 108.733 kb on + strand, within ABZR87_RS00525at 108.733 kb on + strand, within ABZR87_RS00525at 108.733 kb on + strand, within ABZR87_RS00525at 108.734 kb on - strand, within ABZR87_RS00525at 108.734 kb on - strand, within ABZR87_RS00525at 108.739 kb on + strand, within ABZR87_RS00525at 108.739 kb on + strand, within ABZR87_RS00525at 108.740 kb on - strand, within ABZR87_RS00525at 108.740 kb on - strand, within ABZR87_RS00525at 108.740 kb on - strand, within ABZR87_RS00525at 108.740 kb on - strand, within ABZR87_RS00525at 108.740 kb on - strand, within ABZR87_RS00525at 108.740 kb on - strand, within ABZR87_RS00525at 108.740 kb on - strand, within ABZR87_RS00525at 108.796 kb on + strand, within ABZR87_RS00525at 108.796 kb on + strand, within ABZR87_RS00525at 108.796 kb on + strand, within ABZR87_RS00525at 108.797 kb on - strand, within ABZR87_RS00525at 108.880 kb on + strand, within ABZR87_RS00525at 108.881 kb on - strand, within ABZR87_RS00525at 108.881 kb on - strand, within ABZR87_RS00525at 108.881 kb on - strand, within ABZR87_RS00525at 108.881 kb on - strand, within ABZR87_RS00525at 108.881 kb on - strand, within ABZR87_RS00525at 108.934 kb on + strand, within ABZR87_RS00525at 108.934 kb on + strand, within ABZR87_RS00525at 108.934 kb on + strand, within ABZR87_RS00525at 108.935 kb on - strand, within ABZR87_RS00525at 108.935 kb on - strand, within ABZR87_RS00525at 108.935 kb on - strand, within ABZR87_RS00525at 109.174 kb on + strand, within ABZR87_RS00525at 109.321 kb on + strandat 109.321 kb on + strandat 109.321 kb on + strandat 109.321 kb on + strandat 109.321 kb on + strandat 109.322 kb on - strandat 109.322 kb on - strandat 109.322 kb on - strandat 109.381 kb on + strandat 109.381 kb on + strandat 109.381 kb on + strandat 109.381 kb on + strandat 109.382 kb on - strandat 109.382 kb on - strandat 109.429 kb on + strandat 109.429 kb on + strandat 109.429 kb on + strandat 109.429 kb on + strandat 109.429 kb on + strandat 109.429 kb on + strandat 109.430 kb on - strandat 109.430 kb on - strandat 109.488 kb on + strandat 109.488 kb on + strandat 109.489 kb on - strandat 109.489 kb on - strandat 109.489 kb on - strandat 109.489 kb on - strandat 109.489 kb on - strandat 109.650 kb on - strandat 109.665 kb on - strandat 109.665 kb on - strandat 109.799 kb on + strand, within ABZR87_RS00530at 109.799 kb on + strand, within ABZR87_RS00530at 109.799 kb on + strand, within ABZR87_RS00530at 109.799 kb on + strand, within ABZR87_RS00530at 109.799 kb on + strand, within ABZR87_RS00530at 109.799 kb on + strand, within ABZR87_RS00530at 109.799 kb on + strand, within ABZR87_RS00530at 109.800 kb on - strand, within ABZR87_RS00530at 109.800 kb on - strand, within ABZR87_RS00530at 109.800 kb on - strand, within ABZR87_RS00530at 109.800 kb on - strand, within ABZR87_RS00530at 109.890 kb on - strand, within ABZR87_RS00530at 110.018 kb on + strand, within ABZR87_RS00530at 110.021 kb on + strand, within ABZR87_RS00530at 110.021 kb on + strand, within ABZR87_RS00530at 110.021 kb on + strand, within ABZR87_RS00530at 110.050 kb on + strand, within ABZR87_RS00530at 110.050 kb on + strand, within ABZR87_RS00530at 110.050 kb on + strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.051 kb on - strand, within ABZR87_RS00530at 110.177 kb on + strand, within ABZR87_RS00530at 110.177 kb on + strand, within ABZR87_RS00530at 110.178 kb on - strand, within ABZR87_RS00530at 110.178 kb on - strand, within ABZR87_RS00530at 110.178 kb on - strand, within ABZR87_RS00530at 110.321 kb on + strand, within ABZR87_RS00530at 110.321 kb on + strand, within ABZR87_RS00530at 110.322 kb on - strand, within ABZR87_RS00530at 110.322 kb on - strand, within ABZR87_RS00530at 110.322 kb on - strand, within ABZR87_RS00530at 110.322 kb on - strand, within ABZR87_RS00530at 110.336 kb on + strand, within ABZR87_RS00530at 110.336 kb on + strand, within ABZR87_RS00530at 110.336 kb on + strand, within ABZR87_RS00530at 110.337 kb on - strand, within ABZR87_RS00530at 110.337 kb on - strand, within ABZR87_RS00530at 110.337 kb on - strand, within ABZR87_RS00530at 110.349 kb on - strand, within ABZR87_RS00530at 110.349 kb on - strand, within ABZR87_RS00530at 110.349 kb on - strand, within ABZR87_RS00530at 110.349 kb on - strand, within ABZR87_RS00530at 110.482 kb on + strand, within ABZR87_RS00530at 110.482 kb on + strand, within ABZR87_RS00530at 110.600 kb on + strand, within ABZR87_RS00530at 110.600 kb on + strand, within ABZR87_RS00530at 110.601 kb on - strand, within ABZR87_RS00530at 110.601 kb on - strand, within ABZR87_RS00530at 110.601 kb on - strand, within ABZR87_RS00530at 110.765 kb on + strandat 110.766 kb on - strandat 110.766 kb on - strandat 110.768 kb on + strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.769 kb on - strandat 110.857 kb on + strandat 110.857 kb on + strandat 110.857 kb on + strandat 110.858 kb on - strandat 110.858 kb on - strandat 110.868 kb on + strandat 110.869 kb on - strandat 110.869 kb on - strandat 110.869 kb on - strandat 110.869 kb on - strandat 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.063 kb on + strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.064 kb on - strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.153 kb on + strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.154 kb on - strand, within ABZR87_RS00535at 111.501 kb on - strand, within ABZR87_RS00540at 111.501 kb on - strand, within ABZR87_RS00540at 111.605 kb on + strand, within ABZR87_RS00540at 111.605 kb on + strand, within ABZR87_RS00540at 111.606 kb on - strand, within ABZR87_RS00540at 111.606 kb on - strand, within ABZR87_RS00540at 111.630 kb on - strand, within ABZR87_RS00540at 111.647 kb on + strand, within ABZR87_RS00540at 111.647 kb on + strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.686 kb on + strand, within ABZR87_RS00540at 111.687 kb on - strand, within ABZR87_RS00540at 111.728 kb on + strand, within ABZR87_RS00540at 111.729 kb on - strand, within ABZR87_RS00540at 111.729 kb on - strand, within ABZR87_RS00540

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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108,733 + ABZR87_RS00525 0.57 -3.7
108,733 + ABZR87_RS00525 0.57 +0.4
108,733 + ABZR87_RS00525 0.57 +0.6
108,733 + ABZR87_RS00525 0.57 -0.0
108,733 + ABZR87_RS00525 0.57 -0.8
108,734 - ABZR87_RS00525 0.57 -0.1
108,734 - ABZR87_RS00525 0.57 +0.1
108,739 + ABZR87_RS00525 0.57 -3.3
108,739 + ABZR87_RS00525 0.57 -0.2
108,740 - ABZR87_RS00525 0.58 -0.5
108,740 - ABZR87_RS00525 0.58 -0.5
108,740 - ABZR87_RS00525 0.58 -2.5
108,740 - ABZR87_RS00525 0.58 +1.9
108,740 - ABZR87_RS00525 0.58 +1.5
108,740 - ABZR87_RS00525 0.58 -2.6
108,740 - ABZR87_RS00525 0.58 -0.7
108,796 + ABZR87_RS00525 0.61 -3.1
108,796 + ABZR87_RS00525 0.61 -1.1
108,796 + ABZR87_RS00525 0.61 +0.2
108,797 - ABZR87_RS00525 0.61 +1.0
108,880 + ABZR87_RS00525 0.66 -2.7
108,881 - ABZR87_RS00525 0.66 +0.8
108,881 - ABZR87_RS00525 0.66 -2.1
108,881 - ABZR87_RS00525 0.66 -3.0
108,881 - ABZR87_RS00525 0.66 +0.3
108,881 - ABZR87_RS00525 0.66 -3.0
108,934 + ABZR87_RS00525 0.69 -0.4
108,934 + ABZR87_RS00525 0.69 -0.2
108,934 + ABZR87_RS00525 0.69 -4.2
108,935 - ABZR87_RS00525 0.69 +0.3
108,935 - ABZR87_RS00525 0.69 +0.8
108,935 - ABZR87_RS00525 0.69 +0.0
109,174 + ABZR87_RS00525 0.84 -2.3
109,321 + +1.3
109,321 + +0.8
109,321 + +0.3
109,321 + +1.5
109,321 + +0.4
109,322 - -1.3
109,322 - -0.2
109,322 - +0.1
109,381 + +1.2
109,381 + +2.1
109,381 + -2.8
109,381 + -1.1
109,382 - +0.9
109,382 - -0.3
109,429 + +0.4
109,429 + +0.3
109,429 + +0.6
109,429 + +0.3
109,429 + -0.2
109,429 + +1.2
109,430 - +1.5
109,430 - -1.1
109,488 + -1.1
109,488 + -0.6
109,489 - -1.9
109,489 - +0.9
109,489 - -1.6
109,489 - -1.6
109,489 - -0.1
109,650 - +0.0
109,665 - +0.4
109,665 - +0.2
109,799 + ABZR87_RS00530 0.20 -1.2
109,799 + ABZR87_RS00530 0.20 +0.6
109,799 + ABZR87_RS00530 0.20 -0.3
109,799 + ABZR87_RS00530 0.20 +1.0
109,799 + ABZR87_RS00530 0.20 -1.1
109,799 + ABZR87_RS00530 0.20 -0.2
109,799 + ABZR87_RS00530 0.20 +0.9
109,800 - ABZR87_RS00530 0.20 -0.5
109,800 - ABZR87_RS00530 0.20 -0.4
109,800 - ABZR87_RS00530 0.20 -0.7
109,800 - ABZR87_RS00530 0.20 -3.0
109,890 - ABZR87_RS00530 0.27 +0.4
110,018 + ABZR87_RS00530 0.37 +0.3
110,021 + ABZR87_RS00530 0.37 +0.8
110,021 + ABZR87_RS00530 0.37 -2.4
110,021 + ABZR87_RS00530 0.37 -1.9
110,050 + ABZR87_RS00530 0.39 -0.5
110,050 + ABZR87_RS00530 0.39 -3.4
110,050 + ABZR87_RS00530 0.39 +0.7
110,051 - ABZR87_RS00530 0.39 -1.1
110,051 - ABZR87_RS00530 0.39 +0.1
110,051 - ABZR87_RS00530 0.39 +0.7
110,051 - ABZR87_RS00530 0.39 -2.5
110,051 - ABZR87_RS00530 0.39 -3.9
110,177 + ABZR87_RS00530 0.49 -0.1
110,177 + ABZR87_RS00530 0.49 +0.5
110,178 - ABZR87_RS00530 0.49 -2.3
110,178 - ABZR87_RS00530 0.49 +0.9
110,178 - ABZR87_RS00530 0.49 -0.2
110,321 + ABZR87_RS00530 0.60 -1.4
110,321 + ABZR87_RS00530 0.60 -0.3
110,322 - ABZR87_RS00530 0.60 +0.1
110,322 - ABZR87_RS00530 0.60 -3.3
110,322 - ABZR87_RS00530 0.60 -1.4
110,322 - ABZR87_RS00530 0.60 -1.4
110,336 + ABZR87_RS00530 0.61 -0.0
110,336 + ABZR87_RS00530 0.61 +2.1
110,336 + ABZR87_RS00530 0.61 +0.8
110,337 - ABZR87_RS00530 0.61 -1.2
110,337 - ABZR87_RS00530 0.61 -0.1
110,337 - ABZR87_RS00530 0.61 +1.7
110,349 - ABZR87_RS00530 0.62 -0.9
110,349 - ABZR87_RS00530 0.62 +0.0
110,349 - ABZR87_RS00530 0.62 +1.2
110,349 - ABZR87_RS00530 0.62 +0.4
110,482 + ABZR87_RS00530 0.72 +0.3
110,482 + ABZR87_RS00530 0.72 +1.6
110,600 + ABZR87_RS00530 0.81 -0.2
110,600 + ABZR87_RS00530 0.81 -0.4
110,601 - ABZR87_RS00530 0.81 -2.3
110,601 - ABZR87_RS00530 0.81 -0.1
110,601 - ABZR87_RS00530 0.81 -2.2
110,765 + +0.5
110,766 - +0.7
110,766 - -2.9
110,768 + +0.9
110,769 - -0.5
110,769 - +1.8
110,769 - -0.0
110,769 - +0.3
110,769 - -1.6
110,769 - -3.8
110,857 + -2.0
110,857 + -3.4
110,857 + -2.3
110,858 - +1.5
110,858 - -0.2
110,868 + +0.5
110,869 - -0.4
110,869 - -0.1
110,869 - -0.1
110,869 - +0.2
111,063 + ABZR87_RS00535 0.24 +0.4
111,063 + ABZR87_RS00535 0.24 -0.7
111,063 + ABZR87_RS00535 0.24 -2.5
111,063 + ABZR87_RS00535 0.24 +1.3
111,063 + ABZR87_RS00535 0.24 -1.9
111,063 + ABZR87_RS00535 0.24 +1.6
111,063 + ABZR87_RS00535 0.24 +0.2
111,063 + ABZR87_RS00535 0.24 +0.3
111,064 - ABZR87_RS00535 0.24 -3.9
111,064 - ABZR87_RS00535 0.24 -0.2
111,064 - ABZR87_RS00535 0.24 -0.0
111,064 - ABZR87_RS00535 0.24 +1.3
111,064 - ABZR87_RS00535 0.24 -3.2
111,064 - ABZR87_RS00535 0.24 -2.9
111,064 - ABZR87_RS00535 0.24 +1.0
111,064 - ABZR87_RS00535 0.24 +2.7
111,064 - ABZR87_RS00535 0.24 +1.1
111,153 + ABZR87_RS00535 0.50 -1.0
111,153 + ABZR87_RS00535 0.50 +0.0
111,153 + ABZR87_RS00535 0.50 -1.7
111,153 + ABZR87_RS00535 0.50 +1.7
111,153 + ABZR87_RS00535 0.50 +1.3
111,153 + ABZR87_RS00535 0.50 -0.3
111,154 - ABZR87_RS00535 0.50 -1.1
111,154 - ABZR87_RS00535 0.50 -0.0
111,154 - ABZR87_RS00535 0.50 -1.3
111,154 - ABZR87_RS00535 0.50 +1.1
111,154 - ABZR87_RS00535 0.50 -0.5
111,501 - ABZR87_RS00540 0.19 -0.7
111,501 - ABZR87_RS00540 0.19 +1.3
111,605 + ABZR87_RS00540 0.31 -0.5
111,605 + ABZR87_RS00540 0.31 +1.3
111,606 - ABZR87_RS00540 0.31 -3.8
111,606 - ABZR87_RS00540 0.31 +2.0
111,630 - ABZR87_RS00540 0.33 -0.9
111,647 + ABZR87_RS00540 0.35 -0.8
111,647 + ABZR87_RS00540 0.35 +1.0
111,648 - ABZR87_RS00540 0.35 -0.6
111,648 - ABZR87_RS00540 0.35 +0.3
111,648 - ABZR87_RS00540 0.35 -0.4
111,650 + ABZR87_RS00540 0.36 -0.2
111,650 + ABZR87_RS00540 0.36 -1.1
111,650 + ABZR87_RS00540 0.36 +0.8
111,650 + ABZR87_RS00540 0.36 -1.2
111,650 + ABZR87_RS00540 0.36 +1.3
111,650 + ABZR87_RS00540 0.36 +2.3
111,650 + ABZR87_RS00540 0.36 -0.0
111,650 + ABZR87_RS00540 0.36 +0.1
111,650 + ABZR87_RS00540 0.36 -2.6
111,651 - ABZR87_RS00540 0.36 +1.3
111,651 - ABZR87_RS00540 0.36 +0.9
111,651 - ABZR87_RS00540 0.36 +1.6
111,651 - ABZR87_RS00540 0.36 -0.3
111,651 - ABZR87_RS00540 0.36 -2.0
111,651 - ABZR87_RS00540 0.36 +0.9
111,686 + ABZR87_RS00540 0.40 +2.2
111,687 - ABZR87_RS00540 0.40 -0.0
111,728 + ABZR87_RS00540 0.44 +1.1
111,729 - ABZR87_RS00540 0.45 -1.6
111,729 - ABZR87_RS00540 0.45 -2.8

Or see this region's nucleotide sequence