Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3923

Experiment: KB with Asiaticoside 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3921 and Psyr_3922 are separated by 110 nucleotidesPsyr_3922 and Psyr_3923 are separated by 46 nucleotidesPsyr_3923 and Psyr_3924 are separated by 216 nucleotides Psyr_3921: Psyr_3921 - membrane protein, putative, at 4,663,723 to 4,664,853 _3921 Psyr_3922: Psyr_3922 - conserved hypothetical protein, at 4,664,964 to 4,665,629 _3922 Psyr_3923: Psyr_3923 - hypothetical protein, at 4,665,676 to 4,666,611 _3923 Psyr_3924: Psyr_3924 - conserved hypothetical protein, at 4,666,828 to 4,667,541 _3924 Position (kb) 4665 4666 4667Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4664.736 kb on + strand, within Psyr_3921at 4664.736 kb on + strand, within Psyr_3921at 4664.736 kb on + strand, within Psyr_3921at 4664.938 kb on + strandat 4664.971 kb on + strandat 4664.972 kb on - strandat 4664.972 kb on - strandat 4664.972 kb on - strandat 4664.972 kb on - strandat 4664.972 kb on - strandat 4665.020 kb on - strandat 4665.030 kb on - strandat 4665.112 kb on - strand, within Psyr_3922at 4665.112 kb on - strand, within Psyr_3922at 4665.181 kb on + strand, within Psyr_3922at 4665.181 kb on + strand, within Psyr_3922at 4665.181 kb on + strand, within Psyr_3922at 4665.182 kb on - strand, within Psyr_3922at 4665.234 kb on + strand, within Psyr_3922at 4665.235 kb on - strand, within Psyr_3922at 4665.235 kb on - strand, within Psyr_3922at 4665.235 kb on - strand, within Psyr_3922at 4665.235 kb on - strand, within Psyr_3922at 4665.240 kb on - strand, within Psyr_3922at 4665.284 kb on + strand, within Psyr_3922at 4665.415 kb on + strand, within Psyr_3922at 4665.497 kb on + strand, within Psyr_3922at 4665.584 kb on + strandat 4665.584 kb on + strandat 4665.585 kb on - strandat 4665.612 kb on - strandat 4665.732 kb on - strandat 4665.798 kb on + strand, within Psyr_3923at 4665.798 kb on + strand, within Psyr_3923at 4665.798 kb on + strand, within Psyr_3923at 4665.799 kb on - strand, within Psyr_3923at 4665.799 kb on - strand, within Psyr_3923at 4665.799 kb on - strand, within Psyr_3923at 4665.799 kb on - strand, within Psyr_3923at 4665.799 kb on - strand, within Psyr_3923at 4665.800 kb on + strand, within Psyr_3923at 4665.801 kb on - strand, within Psyr_3923at 4665.856 kb on + strand, within Psyr_3923at 4665.856 kb on + strand, within Psyr_3923at 4665.857 kb on - strand, within Psyr_3923at 4665.975 kb on + strand, within Psyr_3923at 4665.975 kb on + strand, within Psyr_3923at 4665.976 kb on - strand, within Psyr_3923at 4665.999 kb on + strand, within Psyr_3923at 4666.008 kb on + strand, within Psyr_3923at 4666.009 kb on - strand, within Psyr_3923at 4666.036 kb on - strand, within Psyr_3923at 4666.037 kb on + strand, within Psyr_3923at 4666.068 kb on + strand, within Psyr_3923at 4666.069 kb on - strand, within Psyr_3923at 4666.069 kb on - strand, within Psyr_3923at 4666.069 kb on - strand, within Psyr_3923at 4666.087 kb on + strand, within Psyr_3923at 4666.154 kb on + strand, within Psyr_3923at 4666.155 kb on - strand, within Psyr_3923at 4666.155 kb on - strand, within Psyr_3923at 4666.155 kb on - strand, within Psyr_3923at 4666.155 kb on - strand, within Psyr_3923at 4666.239 kb on + strand, within Psyr_3923at 4666.240 kb on - strand, within Psyr_3923at 4666.240 kb on - strand, within Psyr_3923at 4666.240 kb on - strand, within Psyr_3923at 4666.281 kb on - strand, within Psyr_3923at 4666.325 kb on + strand, within Psyr_3923at 4666.333 kb on + strand, within Psyr_3923at 4666.333 kb on + strand, within Psyr_3923at 4666.333 kb on + strand, within Psyr_3923at 4666.333 kb on + strand, within Psyr_3923at 4666.333 kb on + strand, within Psyr_3923at 4666.333 kb on + strand, within Psyr_3923at 4666.334 kb on - strand, within Psyr_3923at 4666.334 kb on - strand, within Psyr_3923at 4666.334 kb on - strand, within Psyr_3923at 4666.334 kb on - strand, within Psyr_3923at 4666.334 kb on - strand, within Psyr_3923at 4666.365 kb on - strand, within Psyr_3923at 4666.367 kb on + strand, within Psyr_3923at 4666.411 kb on + strand, within Psyr_3923at 4666.412 kb on - strand, within Psyr_3923at 4666.412 kb on - strand, within Psyr_3923at 4666.412 kb on - strand, within Psyr_3923at 4666.605 kb on + strandat 4666.606 kb on - strandat 4666.611 kb on + strandat 4666.611 kb on + strandat 4666.611 kb on + strandat 4666.612 kb on - strandat 4666.612 kb on - strandat 4666.615 kb on + strandat 4666.735 kb on + strandat 4666.763 kb on - strandat 4666.797 kb on + strandat 4666.797 kb on + strandat 4666.798 kb on - strandat 4666.798 kb on - strandat 4666.798 kb on - strandat 4666.801 kb on + strandat 4666.824 kb on + strandat 4666.844 kb on + strandat 4666.844 kb on + strandat 4666.969 kb on + strand, within Psyr_3924at 4666.969 kb on + strand, within Psyr_3924at 4666.969 kb on + strand, within Psyr_3924at 4666.970 kb on - strand, within Psyr_3924at 4667.040 kb on + strand, within Psyr_3924at 4667.040 kb on + strand, within Psyr_3924at 4667.041 kb on - strand, within Psyr_3924at 4667.073 kb on + strand, within Psyr_3924at 4667.073 kb on + strand, within Psyr_3924at 4667.074 kb on - strand, within Psyr_3924at 4667.078 kb on - strand, within Psyr_3924at 4667.078 kb on - strand, within Psyr_3924at 4667.125 kb on + strand, within Psyr_3924at 4667.162 kb on - strand, within Psyr_3924at 4667.166 kb on + strand, within Psyr_3924at 4667.167 kb on - strand, within Psyr_3924at 4667.184 kb on + strand, within Psyr_3924at 4667.269 kb on + strand, within Psyr_3924at 4667.269 kb on + strand, within Psyr_3924at 4667.269 kb on + strand, within Psyr_3924at 4667.270 kb on - strand, within Psyr_3924at 4667.270 kb on - strand, within Psyr_3924at 4667.356 kb on + strand, within Psyr_3924at 4667.356 kb on + strand, within Psyr_3924at 4667.357 kb on - strand, within Psyr_3924at 4667.402 kb on - strand, within Psyr_3924at 4667.402 kb on - strand, within Psyr_3924at 4667.402 kb on - strand, within Psyr_3924at 4667.445 kb on + strand, within Psyr_3924at 4667.446 kb on - strand, within Psyr_3924at 4667.473 kb on + strandat 4667.585 kb on + strandat 4667.585 kb on + strandat 4667.585 kb on + strandat 4667.585 kb on + strandat 4667.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Asiaticoside 10 mM
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4,664,736 + Psyr_3921 0.90 -0.3
4,664,736 + Psyr_3921 0.90 +0.6
4,664,736 + Psyr_3921 0.90 +0.7
4,664,938 + +1.2
4,664,971 + -0.6
4,664,972 - -1.2
4,664,972 - +0.3
4,664,972 - -0.0
4,664,972 - +0.3
4,664,972 - -0.2
4,665,020 - +0.1
4,665,030 - +0.3
4,665,112 - Psyr_3922 0.22 +1.0
4,665,112 - Psyr_3922 0.22 -0.2
4,665,181 + Psyr_3922 0.33 +0.6
4,665,181 + Psyr_3922 0.33 -0.3
4,665,181 + Psyr_3922 0.33 +0.0
4,665,182 - Psyr_3922 0.33 +0.3
4,665,234 + Psyr_3922 0.41 +0.3
4,665,235 - Psyr_3922 0.41 -0.2
4,665,235 - Psyr_3922 0.41 -0.6
4,665,235 - Psyr_3922 0.41 -0.6
4,665,235 - Psyr_3922 0.41 -0.9
4,665,240 - Psyr_3922 0.41 -2.2
4,665,284 + Psyr_3922 0.48 +1.0
4,665,415 + Psyr_3922 0.68 +0.0
4,665,497 + Psyr_3922 0.80 -1.0
4,665,584 + +0.1
4,665,584 + +1.0
4,665,585 - -0.2
4,665,612 - -0.3
4,665,732 - -0.1
4,665,798 + Psyr_3923 0.13 -2.9
4,665,798 + Psyr_3923 0.13 -1.4
4,665,798 + Psyr_3923 0.13 -2.4
4,665,799 - Psyr_3923 0.13 +0.3
4,665,799 - Psyr_3923 0.13 -0.1
4,665,799 - Psyr_3923 0.13 +0.5
4,665,799 - Psyr_3923 0.13 -1.0
4,665,799 - Psyr_3923 0.13 -0.2
4,665,800 + Psyr_3923 0.13 -0.9
4,665,801 - Psyr_3923 0.13 -0.8
4,665,856 + Psyr_3923 0.19 -0.1
4,665,856 + Psyr_3923 0.19 -1.2
4,665,857 - Psyr_3923 0.19 -0.9
4,665,975 + Psyr_3923 0.32 -1.0
4,665,975 + Psyr_3923 0.32 -3.4
4,665,976 - Psyr_3923 0.32 +1.5
4,665,999 + Psyr_3923 0.35 -3.4
4,666,008 + Psyr_3923 0.35 -0.3
4,666,009 - Psyr_3923 0.36 +0.1
4,666,036 - Psyr_3923 0.38 -1.4
4,666,037 + Psyr_3923 0.39 -1.4
4,666,068 + Psyr_3923 0.42 -0.4
4,666,069 - Psyr_3923 0.42 -0.8
4,666,069 - Psyr_3923 0.42 +0.7
4,666,069 - Psyr_3923 0.42 +0.8
4,666,087 + Psyr_3923 0.44 +0.6
4,666,154 + Psyr_3923 0.51 -0.4
4,666,155 - Psyr_3923 0.51 +0.5
4,666,155 - Psyr_3923 0.51 -1.2
4,666,155 - Psyr_3923 0.51 -0.3
4,666,155 - Psyr_3923 0.51 -0.1
4,666,239 + Psyr_3923 0.60 -1.2
4,666,240 - Psyr_3923 0.60 -2.3
4,666,240 - Psyr_3923 0.60 +0.3
4,666,240 - Psyr_3923 0.60 -0.1
4,666,281 - Psyr_3923 0.65 +0.0
4,666,325 + Psyr_3923 0.69 +0.4
4,666,333 + Psyr_3923 0.70 +0.1
4,666,333 + Psyr_3923 0.70 -0.5
4,666,333 + Psyr_3923 0.70 -1.0
4,666,333 + Psyr_3923 0.70 -1.3
4,666,333 + Psyr_3923 0.70 -0.7
4,666,333 + Psyr_3923 0.70 +1.0
4,666,334 - Psyr_3923 0.70 -0.5
4,666,334 - Psyr_3923 0.70 +0.4
4,666,334 - Psyr_3923 0.70 -0.1
4,666,334 - Psyr_3923 0.70 -0.4
4,666,334 - Psyr_3923 0.70 -0.2
4,666,365 - Psyr_3923 0.74 -0.4
4,666,367 + Psyr_3923 0.74 -0.7
4,666,411 + Psyr_3923 0.79 +0.0
4,666,412 - Psyr_3923 0.79 -1.7
4,666,412 - Psyr_3923 0.79 +0.2
4,666,412 - Psyr_3923 0.79 +1.0
4,666,605 + +0.8
4,666,606 - -2.2
4,666,611 + +1.5
4,666,611 + +0.6
4,666,611 + -0.4
4,666,612 - +0.3
4,666,612 - +0.9
4,666,615 + +0.3
4,666,735 + +0.5
4,666,763 - -0.3
4,666,797 + -0.2
4,666,797 + -2.9
4,666,798 - +1.1
4,666,798 - -1.5
4,666,798 - -0.2
4,666,801 + -2.4
4,666,824 + +0.6
4,666,844 + +0.3
4,666,844 + -2.4
4,666,969 + Psyr_3924 0.20 -0.1
4,666,969 + Psyr_3924 0.20 +0.4
4,666,969 + Psyr_3924 0.20 -0.4
4,666,970 - Psyr_3924 0.20 -1.1
4,667,040 + Psyr_3924 0.30 +0.6
4,667,040 + Psyr_3924 0.30 +0.8
4,667,041 - Psyr_3924 0.30 +0.5
4,667,073 + Psyr_3924 0.34 -1.1
4,667,073 + Psyr_3924 0.34 -0.7
4,667,074 - Psyr_3924 0.34 -1.1
4,667,078 - Psyr_3924 0.35 -0.3
4,667,078 - Psyr_3924 0.35 -0.0
4,667,125 + Psyr_3924 0.42 -0.3
4,667,162 - Psyr_3924 0.47 +0.4
4,667,166 + Psyr_3924 0.47 +0.7
4,667,167 - Psyr_3924 0.47 +0.7
4,667,184 + Psyr_3924 0.50 +1.4
4,667,269 + Psyr_3924 0.62 -0.7
4,667,269 + Psyr_3924 0.62 -0.2
4,667,269 + Psyr_3924 0.62 -0.6
4,667,270 - Psyr_3924 0.62 +0.3
4,667,270 - Psyr_3924 0.62 -0.2
4,667,356 + Psyr_3924 0.74 +1.1
4,667,356 + Psyr_3924 0.74 -0.5
4,667,357 - Psyr_3924 0.74 -2.4
4,667,402 - Psyr_3924 0.80 -1.1
4,667,402 - Psyr_3924 0.80 -0.6
4,667,402 - Psyr_3924 0.80 -1.3
4,667,445 + Psyr_3924 0.86 +3.3
4,667,446 - Psyr_3924 0.87 -0.2
4,667,473 + -0.5
4,667,585 + -0.4
4,667,585 + +0.2
4,667,585 + +0.1
4,667,585 + -0.6
4,667,585 + -0.9

Or see this region's nucleotide sequence