Experiment: RCH2 defined with Nickel (II) chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4948 and Pf6N2E2_4949 are separated by 195 nucleotides Pf6N2E2_4949 and Pf6N2E2_4950 are separated by 1 nucleotides Pf6N2E2_4950 and Pf6N2E2_4951 are separated by 201 nucleotides
Pf6N2E2_4948 - Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1, at 5,703,631 to 5,704,788
_4948
Pf6N2E2_4949 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 5,704,984 to 5,705,916
_4949
Pf6N2E2_4950 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 5,705,918 to 5,706,538
_4950
Pf6N2E2_4951 - FIG00955422: hypothetical protein, at 5,706,740 to 5,707,183
_4951
Position (kb) 5704
5705
5706 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5703.985 kb on + strand, within Pf6N2E2_4948 at 5703.985 kb on + strand, within Pf6N2E2_4948 at 5703.985 kb on + strand, within Pf6N2E2_4948 at 5703.986 kb on - strand, within Pf6N2E2_4948 at 5703.986 kb on - strand, within Pf6N2E2_4948 at 5704.006 kb on + strand, within Pf6N2E2_4948 at 5704.007 kb on - strand, within Pf6N2E2_4948 at 5704.007 kb on - strand, within Pf6N2E2_4948 at 5704.007 kb on - strand, within Pf6N2E2_4948 at 5704.007 kb on - strand, within Pf6N2E2_4948 at 5704.148 kb on - strand, within Pf6N2E2_4948 at 5704.148 kb on - strand, within Pf6N2E2_4948 at 5704.195 kb on + strand, within Pf6N2E2_4948 at 5704.195 kb on + strand, within Pf6N2E2_4948 at 5704.195 kb on + strand, within Pf6N2E2_4948 at 5704.195 kb on + strand, within Pf6N2E2_4948 at 5704.196 kb on - strand, within Pf6N2E2_4948 at 5704.196 kb on - strand, within Pf6N2E2_4948 at 5704.380 kb on + strand, within Pf6N2E2_4948 at 5704.381 kb on - strand, within Pf6N2E2_4948 at 5704.592 kb on + strand, within Pf6N2E2_4948 at 5704.592 kb on + strand, within Pf6N2E2_4948 at 5704.592 kb on + strand, within Pf6N2E2_4948 at 5704.592 kb on + strand, within Pf6N2E2_4948 at 5704.592 kb on + strand, within Pf6N2E2_4948 at 5704.593 kb on - strand, within Pf6N2E2_4948 at 5704.610 kb on - strand, within Pf6N2E2_4948 at 5704.669 kb on + strand, within Pf6N2E2_4948 at 5704.669 kb on + strand, within Pf6N2E2_4948 at 5704.669 kb on + strand, within Pf6N2E2_4948 at 5704.669 kb on + strand, within Pf6N2E2_4948 at 5704.670 kb on - strand, within Pf6N2E2_4948 at 5704.670 kb on - strand, within Pf6N2E2_4948 at 5704.670 kb on - strand, within Pf6N2E2_4948 at 5704.884 kb on + strand at 5704.884 kb on + strand at 5704.884 kb on + strand at 5704.884 kb on + strand at 5705.324 kb on + strand, within Pf6N2E2_4949 at 5705.324 kb on + strand, within Pf6N2E2_4949 at 5705.325 kb on - strand, within Pf6N2E2_4949 at 5705.325 kb on - strand, within Pf6N2E2_4949 at 5705.325 kb on - strand, within Pf6N2E2_4949 at 5705.325 kb on - strand, within Pf6N2E2_4949 at 5705.325 kb on - strand at 5705.325 kb on - strand, within Pf6N2E2_4949 at 5705.325 kb on - strand, within Pf6N2E2_4949 at 5705.325 kb on - strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.543 kb on + strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.544 kb on - strand, within Pf6N2E2_4949 at 5705.582 kb on + strand, within Pf6N2E2_4949 at 5705.583 kb on - strand, within Pf6N2E2_4949 at 5705.583 kb on - strand, within Pf6N2E2_4949 at 5705.585 kb on + strand, within Pf6N2E2_4949 at 5705.585 kb on + strand, within Pf6N2E2_4949 at 5705.585 kb on + strand, within Pf6N2E2_4949 at 5705.585 kb on + strand, within Pf6N2E2_4949 at 5705.586 kb on - strand, within Pf6N2E2_4949 at 5705.586 kb on - strand, within Pf6N2E2_4949 at 5705.597 kb on + strand, within Pf6N2E2_4949 at 5705.598 kb on - strand, within Pf6N2E2_4949 at 5705.598 kb on - strand, within Pf6N2E2_4949 at 5705.598 kb on - strand, within Pf6N2E2_4949 at 5705.691 kb on - strand, within Pf6N2E2_4949 at 5705.904 kb on + strand at 5705.904 kb on + strand at 5705.904 kb on + strand at 5705.904 kb on + strand at 5705.905 kb on - strand at 5705.905 kb on - strand at 5705.905 kb on - strand at 5706.029 kb on + strand, within Pf6N2E2_4950 at 5706.029 kb on + strand, within Pf6N2E2_4950 at 5706.045 kb on - strand, within Pf6N2E2_4950 at 5706.132 kb on + strand, within Pf6N2E2_4950 at 5706.132 kb on + strand, within Pf6N2E2_4950 at 5706.132 kb on + strand, within Pf6N2E2_4950 at 5706.133 kb on - strand, within Pf6N2E2_4950 at 5706.133 kb on - strand, within Pf6N2E2_4950 at 5706.133 kb on - strand, within Pf6N2E2_4950 at 5706.246 kb on + strand, within Pf6N2E2_4950 at 5706.247 kb on - strand, within Pf6N2E2_4950 at 5706.247 kb on - strand, within Pf6N2E2_4950 at 5706.306 kb on + strand, within Pf6N2E2_4950 at 5706.307 kb on - strand, within Pf6N2E2_4950 at 5706.307 kb on - strand, within Pf6N2E2_4950 at 5706.307 kb on - strand, within Pf6N2E2_4950 at 5706.307 kb on - strand, within Pf6N2E2_4950 at 5706.307 kb on - strand, within Pf6N2E2_4950 at 5706.432 kb on + strand, within Pf6N2E2_4950 at 5706.433 kb on - strand, within Pf6N2E2_4950 at 5706.433 kb on - strand, within Pf6N2E2_4950 at 5706.597 kb on - strand at 5706.737 kb on + strand at 5706.737 kb on + strand at 5706.737 kb on + strand at 5706.741 kb on + strand at 5706.741 kb on + strand at 5706.741 kb on + strand at 5706.741 kb on + strand at 5706.741 kb on + strand at 5706.741 kb on + strand at 5706.741 kb on + strand at 5706.741 kb on + strand at 5706.741 kb on + strand at 5706.742 kb on - strand at 5706.742 kb on - strand at 5706.745 kb on + strand at 5706.745 kb on + strand at 5706.745 kb on + strand at 5706.745 kb on + strand at 5706.746 kb on - strand at 5706.746 kb on - strand at 5706.755 kb on + strand at 5706.801 kb on - strand, within Pf6N2E2_4951 at 5706.801 kb on - strand, within Pf6N2E2_4951 at 5706.801 kb on - strand, within Pf6N2E2_4951
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Nickel (II) chloride 0.04 mM remove 5,703,985 + Pf6N2E2_4948 0.31 -1.3 5,703,985 + Pf6N2E2_4948 0.31 +1.3 5,703,985 + Pf6N2E2_4948 0.31 +1.1 5,703,986 - Pf6N2E2_4948 0.31 -2.0 5,703,986 - Pf6N2E2_4948 0.31 +0.3 5,704,006 + Pf6N2E2_4948 0.32 +1.3 5,704,007 - Pf6N2E2_4948 0.32 -1.0 5,704,007 - Pf6N2E2_4948 0.32 +0.9 5,704,007 - Pf6N2E2_4948 0.32 +0.2 5,704,007 - Pf6N2E2_4948 0.32 +0.0 5,704,148 - Pf6N2E2_4948 0.45 -1.7 5,704,148 - Pf6N2E2_4948 0.45 -1.2 5,704,195 + Pf6N2E2_4948 0.49 -0.2 5,704,195 + Pf6N2E2_4948 0.49 +1.1 5,704,195 + Pf6N2E2_4948 0.49 -1.3 5,704,195 + Pf6N2E2_4948 0.49 +0.1 5,704,196 - Pf6N2E2_4948 0.49 -1.0 5,704,196 - Pf6N2E2_4948 0.49 +0.4 5,704,380 + Pf6N2E2_4948 0.65 -0.3 5,704,381 - Pf6N2E2_4948 0.65 +1.0 5,704,592 + Pf6N2E2_4948 0.83 +0.3 5,704,592 + Pf6N2E2_4948 0.83 -3.2 5,704,592 + Pf6N2E2_4948 0.83 -1.3 5,704,592 + Pf6N2E2_4948 0.83 -1.3 5,704,592 + Pf6N2E2_4948 0.83 +1.5 5,704,593 - Pf6N2E2_4948 0.83 +0.4 5,704,610 - Pf6N2E2_4948 0.85 -1.5 5,704,669 + Pf6N2E2_4948 0.90 +0.9 5,704,669 + Pf6N2E2_4948 0.90 +0.4 5,704,669 + Pf6N2E2_4948 0.90 -0.2 5,704,669 + Pf6N2E2_4948 0.90 +0.3 5,704,670 - Pf6N2E2_4948 0.90 -1.6 5,704,670 - Pf6N2E2_4948 0.90 +0.4 5,704,670 - Pf6N2E2_4948 0.90 -0.4 5,704,884 + -1.1 5,704,884 + +0.9 5,704,884 + +1.1 5,704,884 + -0.1 5,705,324 + Pf6N2E2_4949 0.36 +1.1 5,705,324 + Pf6N2E2_4949 0.36 +0.3 5,705,325 - Pf6N2E2_4949 0.37 +1.3 5,705,325 - Pf6N2E2_4949 0.37 +0.6 5,705,325 - Pf6N2E2_4949 0.37 -1.0 5,705,325 - Pf6N2E2_4949 0.37 +0.4 5,705,325 - +1.3 5,705,325 - Pf6N2E2_4949 0.37 +0.4 5,705,325 - Pf6N2E2_4949 0.37 +1.8 5,705,325 - Pf6N2E2_4949 0.37 +1.2 5,705,543 + Pf6N2E2_4949 0.60 -1.0 5,705,543 + Pf6N2E2_4949 0.60 +1.9 5,705,543 + Pf6N2E2_4949 0.60 +0.4 5,705,543 + Pf6N2E2_4949 0.60 +0.5 5,705,543 + Pf6N2E2_4949 0.60 -0.7 5,705,543 + Pf6N2E2_4949 0.60 -0.9 5,705,543 + Pf6N2E2_4949 0.60 -0.3 5,705,543 + Pf6N2E2_4949 0.60 +1.3 5,705,543 + Pf6N2E2_4949 0.60 +0.1 5,705,543 + +1.3 5,705,543 + Pf6N2E2_4949 0.60 -0.3 5,705,543 + Pf6N2E2_4949 0.60 -1.0 5,705,543 + Pf6N2E2_4949 0.60 -0.1 5,705,544 - Pf6N2E2_4949 0.60 -0.5 5,705,544 - Pf6N2E2_4949 0.60 +0.3 5,705,544 - Pf6N2E2_4949 0.60 +0.6 5,705,544 - Pf6N2E2_4949 0.60 +1.6 5,705,544 - Pf6N2E2_4949 0.60 -0.1 5,705,544 - Pf6N2E2_4949 0.60 -1.1 5,705,544 - Pf6N2E2_4949 0.60 +1.5 5,705,544 - Pf6N2E2_4949 0.60 -0.3 5,705,544 - Pf6N2E2_4949 0.60 +0.1 5,705,544 - Pf6N2E2_4949 0.60 -0.4 5,705,544 - Pf6N2E2_4949 0.60 -1.3 5,705,582 + Pf6N2E2_4949 0.64 +0.3 5,705,583 - Pf6N2E2_4949 0.64 -1.3 5,705,583 - Pf6N2E2_4949 0.64 +1.2 5,705,585 + Pf6N2E2_4949 0.64 +0.5 5,705,585 + Pf6N2E2_4949 0.64 -0.3 5,705,585 + Pf6N2E2_4949 0.64 -2.0 5,705,585 + Pf6N2E2_4949 0.64 -0.8 5,705,586 - Pf6N2E2_4949 0.65 -1.9 5,705,586 - Pf6N2E2_4949 0.65 -0.1 5,705,597 + Pf6N2E2_4949 0.66 -2.4 5,705,598 - Pf6N2E2_4949 0.66 +1.1 5,705,598 - Pf6N2E2_4949 0.66 +1.1 5,705,598 - Pf6N2E2_4949 0.66 -0.4 5,705,691 - Pf6N2E2_4949 0.76 -1.2 5,705,904 + +1.3 5,705,904 + +0.6 5,705,904 + +0.9 5,705,904 + -0.0 5,705,905 - -0.6 5,705,905 - -0.4 5,705,905 - -0.3 5,706,029 + Pf6N2E2_4950 0.18 +0.1 5,706,029 + Pf6N2E2_4950 0.18 +0.1 5,706,045 - Pf6N2E2_4950 0.20 -0.3 5,706,132 + Pf6N2E2_4950 0.34 +1.3 5,706,132 + Pf6N2E2_4950 0.34 -1.1 5,706,132 + Pf6N2E2_4950 0.34 -0.4 5,706,133 - Pf6N2E2_4950 0.35 +1.1 5,706,133 - Pf6N2E2_4950 0.35 +0.3 5,706,133 - Pf6N2E2_4950 0.35 -1.0 5,706,246 + Pf6N2E2_4950 0.53 -0.4 5,706,247 - Pf6N2E2_4950 0.53 -1.0 5,706,247 - Pf6N2E2_4950 0.53 -0.1 5,706,306 + Pf6N2E2_4950 0.62 +0.6 5,706,307 - Pf6N2E2_4950 0.63 -0.2 5,706,307 - Pf6N2E2_4950 0.63 -2.9 5,706,307 - Pf6N2E2_4950 0.63 +0.3 5,706,307 - Pf6N2E2_4950 0.63 -0.9 5,706,307 - Pf6N2E2_4950 0.63 -0.7 5,706,432 + Pf6N2E2_4950 0.83 +0.0 5,706,433 - Pf6N2E2_4950 0.83 -0.3 5,706,433 - Pf6N2E2_4950 0.83 -1.3 5,706,597 - -2.2 5,706,737 + -0.4 5,706,737 + -0.7 5,706,737 + +0.3 5,706,741 + -0.3 5,706,741 + -0.3 5,706,741 + -1.0 5,706,741 + +1.2 5,706,741 + -1.2 5,706,741 + -1.0 5,706,741 + +1.7 5,706,741 + -1.1 5,706,741 + +0.2 5,706,742 - +0.6 5,706,742 - -0.1 5,706,745 + +0.2 5,706,745 + -0.3 5,706,745 + -0.8 5,706,745 + +0.5 5,706,746 - +0.0 5,706,746 - -0.5 5,706,755 + +0.6 5,706,801 - Pf6N2E2_4951 0.14 -0.0 5,706,801 - Pf6N2E2_4951 0.14 +1.5 5,706,801 - Pf6N2E2_4951 0.14 -1.9
Or see this region's nucleotide sequence