Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4032

Experiment: RCH2 defined with Nickel (II) chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4031 and Pf6N2E2_4032 overlap by 30 nucleotidesPf6N2E2_4032 and Pf6N2E2_4033 are separated by 69 nucleotides Pf6N2E2_4031 - Biofilm PGA outer membrane secretin PgaA, at 4,704,344 to 4,706,824 _4031 Pf6N2E2_4032 - hypothetical protein, at 4,706,795 to 4,707,001 _4032 Pf6N2E2_4033 - GTP-binding protein, at 4,707,071 to 4,708,540 _4033 Position (kb) 4706 4707 4708Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4705.819 kb on - strand, within Pf6N2E2_4031at 4705.845 kb on + strand, within Pf6N2E2_4031at 4705.845 kb on + strand, within Pf6N2E2_4031at 4705.845 kb on + strand, within Pf6N2E2_4031at 4705.845 kb on + strand, within Pf6N2E2_4031at 4705.846 kb on - strand, within Pf6N2E2_4031at 4705.846 kb on - strand, within Pf6N2E2_4031at 4705.846 kb on - strand, within Pf6N2E2_4031at 4705.846 kb on - strand, within Pf6N2E2_4031at 4705.955 kb on + strand, within Pf6N2E2_4031at 4705.955 kb on + strand, within Pf6N2E2_4031at 4705.956 kb on - strand, within Pf6N2E2_4031at 4705.956 kb on - strand, within Pf6N2E2_4031at 4706.196 kb on + strand, within Pf6N2E2_4031at 4706.196 kb on + strand, within Pf6N2E2_4031at 4706.196 kb on + strand, within Pf6N2E2_4031at 4706.197 kb on - strand, within Pf6N2E2_4031at 4706.197 kb on - strand, within Pf6N2E2_4031at 4706.197 kb on - strand, within Pf6N2E2_4031at 4706.197 kb on - strand, within Pf6N2E2_4031at 4706.197 kb on - strand, within Pf6N2E2_4031at 4706.197 kb on - strand, within Pf6N2E2_4031at 4706.197 kb on - strand, within Pf6N2E2_4031at 4706.202 kb on + strand, within Pf6N2E2_4031at 4706.202 kb on + strand, within Pf6N2E2_4031at 4706.202 kb on + strand, within Pf6N2E2_4031at 4706.202 kb on + strand, within Pf6N2E2_4031at 4706.202 kb on + strand, within Pf6N2E2_4031at 4706.202 kb on + strand, within Pf6N2E2_4031at 4706.202 kb on + strand, within Pf6N2E2_4031at 4706.203 kb on - strand, within Pf6N2E2_4031at 4706.203 kb on - strand, within Pf6N2E2_4031at 4706.203 kb on - strand, within Pf6N2E2_4031at 4706.559 kb on + strand, within Pf6N2E2_4031at 4706.559 kb on + strand, within Pf6N2E2_4031at 4706.559 kb on + strand, within Pf6N2E2_4031at 4706.560 kb on - strand, within Pf6N2E2_4031at 4706.560 kb on - strand, within Pf6N2E2_4031at 4706.560 kb on - strand, within Pf6N2E2_4031at 4706.560 kb on - strand, within Pf6N2E2_4031at 4706.679 kb on + strandat 4706.679 kb on + strandat 4706.715 kb on + strandat 4706.715 kb on + strandat 4706.801 kb on - strandat 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.838 kb on + strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.839 kb on - strand, within Pf6N2E2_4032at 4706.913 kb on + strand, within Pf6N2E2_4032at 4706.914 kb on - strand, within Pf6N2E2_4032at 4706.922 kb on + strand, within Pf6N2E2_4032at 4706.923 kb on - strand, within Pf6N2E2_4032at 4706.923 kb on - strand, within Pf6N2E2_4032at 4706.923 kb on - strand, within Pf6N2E2_4032at 4707.006 kb on + strandat 4707.007 kb on - strandat 4707.007 kb on - strandat 4707.007 kb on - strandat 4707.007 kb on - strandat 4707.012 kb on + strandat 4707.012 kb on + strandat 4707.013 kb on - strandat 4707.171 kb on + strandat 4707.171 kb on + strandat 4707.171 kb on + strandat 4707.171 kb on + strandat 4707.244 kb on + strand, within Pf6N2E2_4033at 4707.244 kb on + strand, within Pf6N2E2_4033at 4707.244 kb on + strand, within Pf6N2E2_4033at 4707.244 kb on + strand, within Pf6N2E2_4033at 4707.244 kb on + strand, within Pf6N2E2_4033at 4707.244 kb on + strand, within Pf6N2E2_4033at 4707.245 kb on - strand, within Pf6N2E2_4033at 4707.245 kb on - strand, within Pf6N2E2_4033at 4707.245 kb on - strand, within Pf6N2E2_4033at 4707.245 kb on - strand, within Pf6N2E2_4033at 4707.245 kb on - strand, within Pf6N2E2_4033at 4707.245 kb on - strand, within Pf6N2E2_4033at 4707.637 kb on - strand, within Pf6N2E2_4033at 4707.744 kb on + strand, within Pf6N2E2_4033at 4707.744 kb on + strand, within Pf6N2E2_4033at 4707.745 kb on - strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.882 kb on + strand, within Pf6N2E2_4033at 4707.883 kb on - strand, within Pf6N2E2_4033at 4707.883 kb on - strand, within Pf6N2E2_4033at 4707.883 kb on - strand, within Pf6N2E2_4033at 4707.883 kb on - strand, within Pf6N2E2_4033at 4707.891 kb on + strand, within Pf6N2E2_4033at 4707.938 kb on + strand, within Pf6N2E2_4033at 4707.938 kb on + strand, within Pf6N2E2_4033at 4707.939 kb on - strand, within Pf6N2E2_4033at 4707.939 kb on - strand, within Pf6N2E2_4033at 4707.991 kb on + strand, within Pf6N2E2_4033at 4707.991 kb on + strand, within Pf6N2E2_4033at 4707.992 kb on - strand, within Pf6N2E2_4033at 4707.993 kb on + strand, within Pf6N2E2_4033at 4707.993 kb on + strand, within Pf6N2E2_4033at 4707.993 kb on + strand, within Pf6N2E2_4033at 4707.993 kb on + strand, within Pf6N2E2_4033at 4707.993 kb on + strand, within Pf6N2E2_4033at 4707.994 kb on - strand, within Pf6N2E2_4033at 4707.994 kb on - strand, within Pf6N2E2_4033

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Nickel (II) chloride 0.04 mM
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4,705,819 - Pf6N2E2_4031 0.59 +0.5
4,705,845 + Pf6N2E2_4031 0.60 +0.2
4,705,845 + Pf6N2E2_4031 0.60 +0.9
4,705,845 + Pf6N2E2_4031 0.60 +0.2
4,705,845 + Pf6N2E2_4031 0.60 +0.8
4,705,846 - Pf6N2E2_4031 0.61 +3.1
4,705,846 - Pf6N2E2_4031 0.61 +1.5
4,705,846 - Pf6N2E2_4031 0.61 +1.1
4,705,846 - Pf6N2E2_4031 0.61 +0.0
4,705,955 + Pf6N2E2_4031 0.65 -0.5
4,705,955 + Pf6N2E2_4031 0.65 -0.7
4,705,956 - Pf6N2E2_4031 0.65 +2.1
4,705,956 - Pf6N2E2_4031 0.65 -1.3
4,706,196 + Pf6N2E2_4031 0.75 +1.5
4,706,196 + Pf6N2E2_4031 0.75 +0.1
4,706,196 + Pf6N2E2_4031 0.75 +0.7
4,706,197 - Pf6N2E2_4031 0.75 +1.1
4,706,197 - Pf6N2E2_4031 0.75 +0.6
4,706,197 - Pf6N2E2_4031 0.75 +0.6
4,706,197 - Pf6N2E2_4031 0.75 +0.3
4,706,197 - Pf6N2E2_4031 0.75 +1.2
4,706,197 - Pf6N2E2_4031 0.75 +0.6
4,706,197 - Pf6N2E2_4031 0.75 -0.9
4,706,202 + Pf6N2E2_4031 0.75 -0.2
4,706,202 + Pf6N2E2_4031 0.75 -0.9
4,706,202 + Pf6N2E2_4031 0.75 +1.1
4,706,202 + Pf6N2E2_4031 0.75 -1.2
4,706,202 + Pf6N2E2_4031 0.75 +0.7
4,706,202 + Pf6N2E2_4031 0.75 +1.9
4,706,202 + Pf6N2E2_4031 0.75 +0.5
4,706,203 - Pf6N2E2_4031 0.75 +1.4
4,706,203 - Pf6N2E2_4031 0.75 -0.1
4,706,203 - Pf6N2E2_4031 0.75 -0.0
4,706,559 + Pf6N2E2_4031 0.89 +2.0
4,706,559 + Pf6N2E2_4031 0.89 +0.4
4,706,559 + Pf6N2E2_4031 0.89 +0.3
4,706,560 - Pf6N2E2_4031 0.89 +1.0
4,706,560 - Pf6N2E2_4031 0.89 +0.3
4,706,560 - Pf6N2E2_4031 0.89 +0.7
4,706,560 - Pf6N2E2_4031 0.89 +0.2
4,706,679 + -0.6
4,706,679 + -0.0
4,706,715 + +0.9
4,706,715 + +0.9
4,706,801 - +1.0
4,706,838 + Pf6N2E2_4032 0.21 +0.9
4,706,838 + Pf6N2E2_4032 0.21 +0.8
4,706,838 + Pf6N2E2_4032 0.21 -0.3
4,706,838 + Pf6N2E2_4032 0.21 +1.7
4,706,838 + Pf6N2E2_4032 0.21 +1.4
4,706,838 + Pf6N2E2_4032 0.21 +0.5
4,706,838 + Pf6N2E2_4032 0.21 -0.1
4,706,838 + Pf6N2E2_4032 0.21 +0.3
4,706,838 + Pf6N2E2_4032 0.21 +0.6
4,706,838 + Pf6N2E2_4032 0.21 +0.2
4,706,838 + Pf6N2E2_4032 0.21 +1.3
4,706,838 + Pf6N2E2_4032 0.21 +0.2
4,706,838 + Pf6N2E2_4032 0.21 +1.1
4,706,838 + Pf6N2E2_4032 0.21 +0.8
4,706,838 + Pf6N2E2_4032 0.21 +0.9
4,706,838 + Pf6N2E2_4032 0.21 +1.3
4,706,838 + Pf6N2E2_4032 0.21 -2.2
4,706,838 + Pf6N2E2_4032 0.21 -0.2
4,706,838 + Pf6N2E2_4032 0.21 +0.5
4,706,838 + Pf6N2E2_4032 0.21 +0.9
4,706,839 - Pf6N2E2_4032 0.21 -0.5
4,706,839 - Pf6N2E2_4032 0.21 -1.6
4,706,839 - Pf6N2E2_4032 0.21 +1.0
4,706,839 - Pf6N2E2_4032 0.21 +0.4
4,706,839 - Pf6N2E2_4032 0.21 +0.7
4,706,839 - Pf6N2E2_4032 0.21 +0.1
4,706,839 - Pf6N2E2_4032 0.21 +0.6
4,706,839 - Pf6N2E2_4032 0.21 +0.1
4,706,839 - Pf6N2E2_4032 0.21 +0.1
4,706,839 - Pf6N2E2_4032 0.21 +0.4
4,706,839 - Pf6N2E2_4032 0.21 +1.9
4,706,839 - Pf6N2E2_4032 0.21 -1.3
4,706,839 - Pf6N2E2_4032 0.21 +0.9
4,706,839 - Pf6N2E2_4032 0.21 +0.3
4,706,839 - Pf6N2E2_4032 0.21 +1.3
4,706,839 - Pf6N2E2_4032 0.21 +1.8
4,706,839 - Pf6N2E2_4032 0.21 +1.4
4,706,839 - Pf6N2E2_4032 0.21 -3.0
4,706,839 - Pf6N2E2_4032 0.21 +0.9
4,706,839 - Pf6N2E2_4032 0.21 -1.2
4,706,839 - Pf6N2E2_4032 0.21 +0.4
4,706,839 - Pf6N2E2_4032 0.21 -0.0
4,706,839 - Pf6N2E2_4032 0.21 +0.7
4,706,913 + Pf6N2E2_4032 0.57 -1.5
4,706,914 - Pf6N2E2_4032 0.57 +0.6
4,706,922 + Pf6N2E2_4032 0.61 +0.5
4,706,923 - Pf6N2E2_4032 0.62 +1.3
4,706,923 - Pf6N2E2_4032 0.62 +0.7
4,706,923 - Pf6N2E2_4032 0.62 +1.8
4,707,006 + +1.8
4,707,007 - +2.8
4,707,007 - -1.3
4,707,007 - +0.4
4,707,007 - -0.0
4,707,012 + -0.3
4,707,012 + -0.2
4,707,013 - +0.6
4,707,171 + -0.0
4,707,171 + -0.2
4,707,171 + +0.5
4,707,171 + -1.3
4,707,244 + Pf6N2E2_4033 0.12 +0.1
4,707,244 + Pf6N2E2_4033 0.12 +0.5
4,707,244 + Pf6N2E2_4033 0.12 -1.8
4,707,244 + Pf6N2E2_4033 0.12 +0.0
4,707,244 + Pf6N2E2_4033 0.12 +1.2
4,707,244 + Pf6N2E2_4033 0.12 +0.6
4,707,245 - Pf6N2E2_4033 0.12 +0.7
4,707,245 - Pf6N2E2_4033 0.12 -1.1
4,707,245 - Pf6N2E2_4033 0.12 +1.7
4,707,245 - Pf6N2E2_4033 0.12 +0.3
4,707,245 - Pf6N2E2_4033 0.12 +0.6
4,707,245 - Pf6N2E2_4033 0.12 +1.2
4,707,637 - Pf6N2E2_4033 0.39 -0.1
4,707,744 + Pf6N2E2_4033 0.46 -0.5
4,707,744 + Pf6N2E2_4033 0.46 +1.1
4,707,745 - Pf6N2E2_4033 0.46 -0.6
4,707,882 + Pf6N2E2_4033 0.55 -0.4
4,707,882 + Pf6N2E2_4033 0.55 +1.0
4,707,882 + Pf6N2E2_4033 0.55 +0.2
4,707,882 + Pf6N2E2_4033 0.55 -2.2
4,707,882 + Pf6N2E2_4033 0.55 -0.7
4,707,882 + Pf6N2E2_4033 0.55 +0.2
4,707,882 + Pf6N2E2_4033 0.55 +0.5
4,707,882 + Pf6N2E2_4033 0.55 +0.5
4,707,882 + Pf6N2E2_4033 0.55 +1.0
4,707,882 + Pf6N2E2_4033 0.55 +0.2
4,707,882 + Pf6N2E2_4033 0.55 +1.5
4,707,882 + Pf6N2E2_4033 0.55 -0.0
4,707,882 + Pf6N2E2_4033 0.55 -1.0
4,707,883 - Pf6N2E2_4033 0.55 -0.0
4,707,883 - Pf6N2E2_4033 0.55 +0.2
4,707,883 - Pf6N2E2_4033 0.55 +0.1
4,707,883 - Pf6N2E2_4033 0.55 +1.0
4,707,891 + Pf6N2E2_4033 0.56 +0.2
4,707,938 + Pf6N2E2_4033 0.59 -1.1
4,707,938 + Pf6N2E2_4033 0.59 +0.1
4,707,939 - Pf6N2E2_4033 0.59 +0.1
4,707,939 - Pf6N2E2_4033 0.59 -0.0
4,707,991 + Pf6N2E2_4033 0.63 +0.7
4,707,991 + Pf6N2E2_4033 0.63 +1.1
4,707,992 - Pf6N2E2_4033 0.63 -0.0
4,707,993 + Pf6N2E2_4033 0.63 -1.6
4,707,993 + Pf6N2E2_4033 0.63 +1.0
4,707,993 + Pf6N2E2_4033 0.63 +0.4
4,707,993 + Pf6N2E2_4033 0.63 -0.7
4,707,993 + Pf6N2E2_4033 0.63 +1.2
4,707,994 - Pf6N2E2_4033 0.63 +0.7
4,707,994 - Pf6N2E2_4033 0.63 +0.6

Or see this region's nucleotide sequence