Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20015 and PFLU_RS20020 are separated by 6 nucleotides PFLU_RS20020 and PFLU_RS20025 are separated by 37 nucleotides PFLU_RS20025 and PFLU_RS20030 are separated by 2 nucleotides
PFLU_RS20015: PFLU_RS20015 - transporter, at 4,529,734 to 4,531,134
_RS20015
PFLU_RS20020: PFLU_RS20020 - gamma-glutamyltransferase family protein, at 4,531,141 to 4,532,751
_RS20020
PFLU_RS20025: PFLU_RS20025 - amino acid ABC transporter ATP-binding protein, at 4,532,789 to 4,533,568
_RS20025
PFLU_RS20030: PFLU_RS20030 - amino acid ABC transporter permease, at 4,533,571 to 4,534,347
_RS20030
Position (kb) 4531
4532
4533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4530.310 kb on + strand, within PFLU_RS20015 at 4530.311 kb on - strand, within PFLU_RS20015 at 4530.862 kb on + strand, within PFLU_RS20015 at 4530.863 kb on - strand, within PFLU_RS20015 at 4530.863 kb on - strand, within PFLU_RS20015 at 4531.098 kb on - strand at 4531.129 kb on + strand at 4531.130 kb on - strand at 4531.142 kb on + strand at 4531.143 kb on - strand at 4531.143 kb on - strand at 4531.143 kb on - strand at 4531.148 kb on - strand at 4531.267 kb on - strand at 4531.333 kb on - strand, within PFLU_RS20020 at 4531.333 kb on - strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.434 kb on + strand, within PFLU_RS20020 at 4531.435 kb on - strand, within PFLU_RS20020 at 4531.435 kb on - strand, within PFLU_RS20020 at 4531.435 kb on - strand, within PFLU_RS20020 at 4531.435 kb on - strand, within PFLU_RS20020 at 4531.435 kb on - strand, within PFLU_RS20020 at 4531.435 kb on - strand, within PFLU_RS20020 at 4531.436 kb on + strand, within PFLU_RS20020 at 4531.436 kb on + strand, within PFLU_RS20020 at 4531.436 kb on + strand, within PFLU_RS20020 at 4531.436 kb on + strand, within PFLU_RS20020 at 4531.436 kb on + strand, within PFLU_RS20020 at 4531.436 kb on + strand, within PFLU_RS20020 at 4531.437 kb on - strand, within PFLU_RS20020 at 4531.437 kb on - strand, within PFLU_RS20020 at 4531.437 kb on - strand, within PFLU_RS20020 at 4531.437 kb on - strand, within PFLU_RS20020 at 4531.628 kb on + strand, within PFLU_RS20020 at 4531.628 kb on + strand, within PFLU_RS20020 at 4531.629 kb on - strand, within PFLU_RS20020 at 4531.653 kb on + strand, within PFLU_RS20020 at 4531.682 kb on + strand, within PFLU_RS20020 at 4531.682 kb on + strand, within PFLU_RS20020 at 4531.682 kb on + strand, within PFLU_RS20020 at 4531.683 kb on - strand, within PFLU_RS20020 at 4531.763 kb on + strand, within PFLU_RS20020 at 4531.763 kb on + strand, within PFLU_RS20020 at 4531.763 kb on + strand, within PFLU_RS20020 at 4531.763 kb on + strand, within PFLU_RS20020 at 4531.763 kb on + strand, within PFLU_RS20020 at 4531.763 kb on + strand, within PFLU_RS20020 at 4531.763 kb on + strand, within PFLU_RS20020 at 4531.764 kb on - strand, within PFLU_RS20020 at 4531.764 kb on - strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.820 kb on + strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.821 kb on - strand, within PFLU_RS20020 at 4531.838 kb on + strand, within PFLU_RS20020 at 4531.838 kb on + strand, within PFLU_RS20020 at 4531.985 kb on + strand, within PFLU_RS20020 at 4531.986 kb on - strand, within PFLU_RS20020 at 4532.049 kb on - strand, within PFLU_RS20020 at 4532.049 kb on - strand, within PFLU_RS20020 at 4532.102 kb on + strand, within PFLU_RS20020 at 4532.356 kb on - strand, within PFLU_RS20020 at 4532.356 kb on - strand, within PFLU_RS20020 at 4532.424 kb on - strand, within PFLU_RS20020 at 4532.698 kb on + strand at 4532.698 kb on + strand at 4532.699 kb on - strand at 4532.699 kb on - strand at 4532.699 kb on - strand at 4532.699 kb on - strand at 4532.778 kb on + strand at 4532.779 kb on - strand at 4532.792 kb on + strand at 4532.953 kb on + strand, within PFLU_RS20025 at 4532.953 kb on + strand, within PFLU_RS20025 at 4533.473 kb on + strand, within PFLU_RS20025 at 4533.473 kb on + strand, within PFLU_RS20025 at 4533.474 kb on - strand, within PFLU_RS20025 at 4533.716 kb on + strand, within PFLU_RS20030 at 4533.716 kb on + strand, within PFLU_RS20030 at 4533.716 kb on + strand, within PFLU_RS20030 at 4533.717 kb on - strand, within PFLU_RS20030 at 4533.717 kb on - strand, within PFLU_RS20030 at 4533.717 kb on - strand, within PFLU_RS20030 at 4533.734 kb on + strand, within PFLU_RS20030 at 4533.734 kb on + strand, within PFLU_RS20030 at 4533.734 kb on + strand, within PFLU_RS20030 at 4533.735 kb on - strand, within PFLU_RS20030 at 4533.735 kb on - strand, within PFLU_RS20030 at 4533.735 kb on - strand, within PFLU_RS20030
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) and Ammonium chloride (N); with TAPS remove 4,530,310 + PFLU_RS20015 0.41 -1.0 4,530,311 - PFLU_RS20015 0.41 -0.7 4,530,862 + PFLU_RS20015 0.81 +0.7 4,530,863 - PFLU_RS20015 0.81 -2.8 4,530,863 - PFLU_RS20015 0.81 +1.2 4,531,098 - -0.5 4,531,129 + +2.1 4,531,130 - +1.8 4,531,142 + -0.2 4,531,143 - +0.2 4,531,143 - +2.2 4,531,143 - -0.1 4,531,148 - -1.7 4,531,267 - -1.4 4,531,333 - PFLU_RS20020 0.12 +0.1 4,531,333 - PFLU_RS20020 0.12 -0.4 4,531,434 + PFLU_RS20020 0.18 -1.7 4,531,434 + PFLU_RS20020 0.18 -1.2 4,531,434 + PFLU_RS20020 0.18 +0.9 4,531,434 + PFLU_RS20020 0.18 -2.2 4,531,434 + PFLU_RS20020 0.18 -0.8 4,531,434 + PFLU_RS20020 0.18 -0.8 4,531,434 + PFLU_RS20020 0.18 -0.2 4,531,434 + PFLU_RS20020 0.18 -1.3 4,531,434 + PFLU_RS20020 0.18 +0.2 4,531,434 + PFLU_RS20020 0.18 -0.1 4,531,435 - PFLU_RS20020 0.18 -1.5 4,531,435 - PFLU_RS20020 0.18 -0.5 4,531,435 - PFLU_RS20020 0.18 +0.7 4,531,435 - PFLU_RS20020 0.18 +1.3 4,531,435 - PFLU_RS20020 0.18 -1.5 4,531,435 - PFLU_RS20020 0.18 -1.8 4,531,436 + PFLU_RS20020 0.18 -0.5 4,531,436 + PFLU_RS20020 0.18 -2.1 4,531,436 + PFLU_RS20020 0.18 -0.4 4,531,436 + PFLU_RS20020 0.18 +1.1 4,531,436 + PFLU_RS20020 0.18 +1.8 4,531,436 + PFLU_RS20020 0.18 -1.8 4,531,437 - PFLU_RS20020 0.18 -1.1 4,531,437 - PFLU_RS20020 0.18 -2.4 4,531,437 - PFLU_RS20020 0.18 +1.4 4,531,437 - PFLU_RS20020 0.18 +0.3 4,531,628 + PFLU_RS20020 0.30 -0.2 4,531,628 + PFLU_RS20020 0.30 -0.7 4,531,629 - PFLU_RS20020 0.30 +0.6 4,531,653 + PFLU_RS20020 0.32 +3.2 4,531,682 + PFLU_RS20020 0.34 -1.4 4,531,682 + PFLU_RS20020 0.34 -1.4 4,531,682 + PFLU_RS20020 0.34 +0.9 4,531,683 - PFLU_RS20020 0.34 +0.7 4,531,763 + PFLU_RS20020 0.39 +0.9 4,531,763 + PFLU_RS20020 0.39 -1.8 4,531,763 + PFLU_RS20020 0.39 +1.6 4,531,763 + PFLU_RS20020 0.39 -2.0 4,531,763 + PFLU_RS20020 0.39 +0.6 4,531,763 + PFLU_RS20020 0.39 -0.5 4,531,763 + PFLU_RS20020 0.39 +1.2 4,531,764 - PFLU_RS20020 0.39 -0.7 4,531,764 - PFLU_RS20020 0.39 +2.6 4,531,820 + PFLU_RS20020 0.42 +0.5 4,531,820 + PFLU_RS20020 0.42 +1.4 4,531,820 + PFLU_RS20020 0.42 +2.0 4,531,820 + PFLU_RS20020 0.42 +0.1 4,531,820 + PFLU_RS20020 0.42 -2.0 4,531,820 + PFLU_RS20020 0.42 -1.8 4,531,820 + PFLU_RS20020 0.42 -2.8 4,531,820 + PFLU_RS20020 0.42 -1.2 4,531,820 + PFLU_RS20020 0.42 -1.5 4,531,821 - PFLU_RS20020 0.42 +2.2 4,531,821 - PFLU_RS20020 0.42 -1.4 4,531,821 - PFLU_RS20020 0.42 -0.5 4,531,821 - PFLU_RS20020 0.42 -1.5 4,531,821 - PFLU_RS20020 0.42 +1.3 4,531,821 - PFLU_RS20020 0.42 -0.4 4,531,821 - PFLU_RS20020 0.42 -0.4 4,531,821 - PFLU_RS20020 0.42 -0.2 4,531,821 - PFLU_RS20020 0.42 -0.5 4,531,821 - PFLU_RS20020 0.42 +0.4 4,531,821 - PFLU_RS20020 0.42 +2.9 4,531,821 - PFLU_RS20020 0.42 +2.6 4,531,838 + PFLU_RS20020 0.43 -1.7 4,531,838 + PFLU_RS20020 0.43 +2.3 4,531,985 + PFLU_RS20020 0.52 -1.9 4,531,986 - PFLU_RS20020 0.52 -1.9 4,532,049 - PFLU_RS20020 0.56 +0.5 4,532,049 - PFLU_RS20020 0.56 -2.1 4,532,102 + PFLU_RS20020 0.60 +0.2 4,532,356 - PFLU_RS20020 0.75 +2.3 4,532,356 - PFLU_RS20020 0.75 -1.3 4,532,424 - PFLU_RS20020 0.80 +0.8 4,532,698 + -1.7 4,532,698 + +1.0 4,532,699 - -1.1 4,532,699 - -2.3 4,532,699 - +1.7 4,532,699 - +0.1 4,532,778 + +1.3 4,532,779 - +1.2 4,532,792 + +2.2 4,532,953 + PFLU_RS20025 0.21 +0.6 4,532,953 + PFLU_RS20025 0.21 -2.4 4,533,473 + PFLU_RS20025 0.88 -1.8 4,533,473 + PFLU_RS20025 0.88 -0.9 4,533,474 - PFLU_RS20025 0.88 -1.1 4,533,716 + PFLU_RS20030 0.19 -0.9 4,533,716 + PFLU_RS20030 0.19 -0.6 4,533,716 + PFLU_RS20030 0.19 -2.6 4,533,717 - PFLU_RS20030 0.19 -0.2 4,533,717 - PFLU_RS20030 0.19 -2.3 4,533,717 - PFLU_RS20030 0.19 -0.4 4,533,734 + PFLU_RS20030 0.21 -0.8 4,533,734 + PFLU_RS20030 0.21 -0.8 4,533,734 + PFLU_RS20030 0.21 +1.8 4,533,735 - PFLU_RS20030 0.21 +0.8 4,533,735 - PFLU_RS20030 0.21 +2.7 4,533,735 - PFLU_RS20030 0.21 +2.2
Or see this region's nucleotide sequence