Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08350

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
1,868,235	+		PFLU_RS08345	0.69	+0.6
1,868,236	-		PFLU_RS08345	0.69	-2.7
1,868,236	-		PFLU_RS08345	0.69	-0.2
1,868,337	+		PFLU_RS08345	0.73	+0.8
1,868,338	-		PFLU_RS08345	0.73	-0.4
1,868,375	+		PFLU_RS08345	0.74	+0.6
1,868,375	+		PFLU_RS08345	0.74	-1.0
1,868,376	-		PFLU_RS08345	0.74	-0.4
1,868,385	+		PFLU_RS08345	0.75	-1.2
1,868,466	+		PFLU_RS08345	0.78	+0.8
1,868,466	+		PFLU_RS08345	0.78	+1.7
1,868,467	-		PFLU_RS08345	0.78	+0.6
1,868,467	-		PFLU_RS08345	0.78	-2.4
1,868,467	-		PFLU_RS08345	0.78	-0.3
1,868,467	-		PFLU_RS08345	0.78	+0.5
1,868,467	-		PFLU_RS08345	0.78	-2.2
1,868,467	-		PFLU_RS08345	0.78	+0.0
1,868,493	+		PFLU_RS08345	0.79	-2.5
1,868,493	+		PFLU_RS08345	0.79	-3.5
1,868,493	+		PFLU_RS08345	0.79	+1.0
1,868,493	+		PFLU_RS08345	0.79	-1.1
1,868,493	+		PFLU_RS08345	0.79	-0.3
1,868,493	+		PFLU_RS08345	0.79	-2.2
1,868,494	-		PFLU_RS08345	0.79	+1.4
1,868,494	-		PFLU_RS08345	0.79	-1.6
1,868,494	-		PFLU_RS08345	0.79	-2.3
1,868,494	-		PFLU_RS08345	0.79	-1.3
1,868,494	-		PFLU_RS08345	0.79	+0.1
1,868,673	+		PFLU_RS08345	0.86	+0.3
1,868,673	+		PFLU_RS08345	0.86	+0.2
1,868,673	+		PFLU_RS08345	0.86	+0.5
1,868,673	+		PFLU_RS08345	0.86	-0.9
1,868,674	-		PFLU_RS08345	0.86	-0.8
1,868,889	+				+1.1
1,869,313	+		PFLU_RS08350	0.43	-1.1
1,869,597	+		PFLU_RS08350	0.84	-1.8
1,869,597	+		PFLU_RS08350	0.84	-1.2
1,869,597	+		PFLU_RS08350	0.84	-0.8
1,869,636	+		PFLU_RS08350	0.90	-0.6
1,869,636	+		PFLU_RS08350	0.90	+1.4
1,869,637	-				-1.2
1,869,672	+				-2.1
1,869,672	+				-1.4
1,869,673	-				+1.5
1,869,673	-				+2.6
1,869,781	+		PFLU_RS08355	0.11	-1.8
1,869,802	+		PFLU_RS08355	0.14	+0.2
1,869,803	-		PFLU_RS08355	0.14	-0.5
1,869,805	+		PFLU_RS08355	0.15	-1.2
1,869,805	+		PFLU_RS08355	0.15	-0.2
1,869,805	+		PFLU_RS08355	0.15	-2.0
1,869,805	+		PFLU_RS08355	0.15	+2.8
1,869,805	+		PFLU_RS08355	0.15	-2.4
1,869,805	+		PFLU_RS08355	0.15	+2.1
1,869,805	+		PFLU_RS08355	0.15	-1.7
1,869,805	+		PFLU_RS08355	0.15	+0.6
1,869,805	+		PFLU_RS08355	0.15	-2.2
1,869,805	+		PFLU_RS08355	0.15	-2.2
1,869,805	+		PFLU_RS08355	0.15	-0.1
1,869,805	+		PFLU_RS08355	0.15	-1.4
1,869,805	+		PFLU_RS08355	0.15	+0.9
1,869,805	+		PFLU_RS08355	0.15	-2.4
1,869,806	-		PFLU_RS08355	0.15	+1.0
1,869,806	-		PFLU_RS08355	0.15	+0.4
1,869,806	-		PFLU_RS08355	0.15	+2.2
1,869,806	-		PFLU_RS08355	0.15	-1.1
1,869,806	-		PFLU_RS08355	0.15	+0.6
1,869,806	-		PFLU_RS08355	0.15	-0.6
1,869,806	-		PFLU_RS08355	0.15	+0.3
1,869,806	-		PFLU_RS08355	0.15	-2.3
1,869,806	-		PFLU_RS08355	0.15	-0.1
1,869,890	-		PFLU_RS08355	0.29	+0.4
1,869,890	-		PFLU_RS08355	0.29	+1.4
1,869,967	+		PFLU_RS08355	0.41	-1.1
1,869,967	+		PFLU_RS08355	0.41	+0.0
1,869,967	+		PFLU_RS08355	0.41	-1.2
1,869,967	+		PFLU_RS08355	0.41	+1.6
1,869,967	+		PFLU_RS08355	0.41	-0.3
1,869,967	+		PFLU_RS08355	0.41	-1.2
1,869,967	+		PFLU_RS08355	0.41	-0.0
1,869,967	+		PFLU_RS08355	0.41	+1.0
1,869,967	+		PFLU_RS08355	0.41	+3.0
1,869,967	+		PFLU_RS08355	0.41	+0.2
1,869,968	-		PFLU_RS08355	0.42	-1.9
1,869,968	-		PFLU_RS08355	0.42	+0.8
1,869,968	-		PFLU_RS08355	0.42	-2.3
1,869,968	-		PFLU_RS08355	0.42	-0.1
1,869,968	-		PFLU_RS08355	0.42	-2.0
1,869,968	-		PFLU_RS08355	0.42	+0.6
1,869,968	-		PFLU_RS08355	0.42	+0.8
1,869,968	-		PFLU_RS08355	0.42	-0.4
1,869,968	-		PFLU_RS08355	0.42	+0.4
1,869,968	-		PFLU_RS08355	0.42	+1.9
1,869,968	-		PFLU_RS08355	0.42	-2.0
1,869,968	-		PFLU_RS08355	0.42	+0.2
1,869,968	-		PFLU_RS08355	0.42	+0.5
1,869,968	-		PFLU_RS08355	0.42	-0.3
1,869,968	-		PFLU_RS08355	0.42	+3.2
1,870,121	+		PFLU_RS08355	0.67	+2.1
1,870,121	+		PFLU_RS08355	0.67	-1.6
1,870,121	+		PFLU_RS08355	0.67	+2.2
1,870,121	+		PFLU_RS08355	0.67	-1.7
1,870,121	+		PFLU_RS08355	0.67	+0.7
1,870,121	+		PFLU_RS08355	0.67	-1.1
1,870,121	+		PFLU_RS08355	0.67	+2.3
1,870,121	+		PFLU_RS08355	0.67	+0.9
1,870,121	+		PFLU_RS08355	0.67	-1.0
1,870,121	+		PFLU_RS08355	0.67	-1.4
1,870,121	+		PFLU_RS08355	0.67	-0.4
1,870,121	+		PFLU_RS08355	0.67	-1.2
1,870,121	+		PFLU_RS08355	0.67	+1.0
1,870,121	+		PFLU_RS08355	0.67	-1.7
1,870,121	+		PFLU_RS08355	0.67	+3.7
1,870,122	-		PFLU_RS08355	0.67	-1.0
1,870,122	-		PFLU_RS08355	0.67	-1.9
1,870,122	-		PFLU_RS08355	0.67	+1.6
1,870,122	-		PFLU_RS08355	0.67	+1.3
1,870,122	-		PFLU_RS08355	0.67	+1.8
1,870,122	-		PFLU_RS08355	0.67	+2.5
1,870,122	-		PFLU_RS08355	0.67	-0.5
1,870,122	-		PFLU_RS08355	0.67	-0.1
1,870,122	-		PFLU_RS08355	0.67	-2.7
1,870,122	-		PFLU_RS08355	0.67	-2.3
1,870,122	-		PFLU_RS08355	0.67	-1.2
1,870,133	+		PFLU_RS08355	0.69	-2.0
1,870,133	+		PFLU_RS08355	0.69	+0.1
1,870,133	+		PFLU_RS08355	0.69	+0.4
1,870,134	-		PFLU_RS08355	0.69	-2.0
1,870,157	+		PFLU_RS08355	0.73	+1.4
1,870,157	+		PFLU_RS08355	0.73	+2.5
1,870,157	+		PFLU_RS08355	0.73	-0.7
1,870,157	+		PFLU_RS08355	0.73	+2.8
1,870,157	+		PFLU_RS08355	0.73	-1.4
1,870,157	+		PFLU_RS08355	0.73	+0.9
1,870,157	+		PFLU_RS08355	0.73	-1.1
1,870,158	-		PFLU_RS08355	0.73	-2.0
1,870,158	-		PFLU_RS08355	0.73	+2.1
1,870,158	-		PFLU_RS08355	0.73	+1.0
1,870,158	-		PFLU_RS08355	0.73	-0.4
1,870,158	-		PFLU_RS08355	0.73	+0.8
1,870,158	-		PFLU_RS08355	0.73	-0.7
1,870,158	-		PFLU_RS08355	0.73	-1.0
1,870,158	-		PFLU_RS08355	0.73	+1.7
1,870,158	-		PFLU_RS08355	0.73	+1.8
1,870,158	-		PFLU_RS08355	0.73	-0.6
1,870,158	-		PFLU_RS08355	0.73	+1.2
1,870,158	-		PFLU_RS08355	0.73	+1.7
1,870,158	-		PFLU_RS08355	0.73	-1.8
1,870,158	-		PFLU_RS08355	0.73	+2.1
1,870,158	-		PFLU_RS08355	0.73	+1.9
1,870,158	-		PFLU_RS08355	0.73	-0.9
1,870,305	+				+0.4
1,870,305	+				-1.4
1,870,306	-				-1.3
1,870,306	-				-0.6
1,870,317	+				+2.8
1,870,317	+				+0.5
1,870,317	+				-0.5
1,870,317	+				-2.1
1,870,317	+				+1.6
1,870,317	+				-1.4
1,870,317	+				-2.4
1,870,318	-				-0.8
1,870,318	-				-1.0
1,870,318	-				-0.2
1,870,318	-				-0.7
1,870,318	-				+1.6
1,870,348	+				+2.6
1,870,348	+				+1.0
1,870,349	-				+1.0
1,870,406	+				+3.7
1,870,406	+				+2.6
1,870,406	+				-2.7
1,870,406	+				-2.6
1,870,406	+				+1.0
1,870,406	+				+2.8
1,870,406	+				+1.2
1,870,406	+				-0.2
1,870,406	+				+1.4
1,870,407	-				+2.0
1,870,407	-				-1.5
1,870,407	-				+1.2
1,870,407	-				-0.1
1,870,407	-				-0.4
1,870,407	-				-1.4
1,870,407	-				-0.1
1,870,407	-				+2.9
1,870,410	+		PFLU_RS08360	0.10	+2.1
1,870,410	+		PFLU_RS08360	0.10	+2.5
1,870,410	+		PFLU_RS08360	0.10	-2.1
1,870,410	+		PFLU_RS08360	0.10	+0.2
1,870,410	+		PFLU_RS08360	0.10	-0.0
1,870,410	+		PFLU_RS08360	0.10	+2.2
1,870,410	+		PFLU_RS08360	0.10	+0.3
1,870,410	+		PFLU_RS08360	0.10	+2.6
1,870,411	-		PFLU_RS08360	0.11	+1.4
1,870,411	-		PFLU_RS08360	0.11	+0.0
1,870,411	-		PFLU_RS08360	0.11	+0.1
1,870,411	-		PFLU_RS08360	0.11	+0.6
1,870,411	-		PFLU_RS08360	0.11	-1.5
1,870,411	-		PFLU_RS08360	0.11	+0.0
1,870,411	-		PFLU_RS08360	0.11	+3.8
1,870,411	-		PFLU_RS08360	0.11	+3.5
1,870,411	-		PFLU_RS08360	0.11	-1.5
1,870,411	-		PFLU_RS08360	0.11	+2.8
1,870,411	-		PFLU_RS08360	0.11	+1.9
1,870,531	+		PFLU_RS08360	0.51	-0.4
1,870,532	-		PFLU_RS08360	0.52	+0.1
1,870,671	+				+1.9
1,870,671	+				+0.3
1,870,671	+				-0.3
1,870,671	+				+2.3
1,870,671	+				+1.0
1,870,671	+				+3.4
1,870,672	-				-1.3
1,870,672	-				-1.0
1,870,682	+				+1.1
1,870,682	+				-1.5
1,870,682	+				+1.8
1,870,682	+				-2.3
1,870,683	-				+1.7
1,870,683	-				-1.3
1,870,683	-				+0.5
1,870,683	-				+1.5
1,870,683	-				+0.1
1,870,683	-				-1.2
1,870,683	-				-0.9
1,870,699	+				-1.3
1,870,699	+				+0.7
1,870,699	+				+4.1
1,870,699	+				+1.2
1,870,699	+				+0.8
1,870,699	+				+0.4
1,870,699	+				+0.6
1,870,699	+				+1.3
1,870,699	+				-1.1
1,870,699	+				+1.5
1,870,699	+				+0.9
1,870,699	+				+4.3
1,870,700	-				+0.2
1,870,700	-				+1.5
1,870,700	-				+1.7
1,870,700	-				+2.5
1,870,700	-				-2.9
1,870,701	+				-1.0
1,870,701	+				+1.2
1,870,701	+				+2.0
1,870,701	+				+1.0
1,870,701	+				-0.5
1,870,701	+				+1.6
1,870,701	+				+0.2
1,870,702	-				-2.3
1,870,702	-				-1.0
1,870,702	-				-1.4
1,870,702	-				-0.8
1,870,702	-				-1.5
1,870,702	-				+1.1
1,870,702	-				-0.2
1,870,702	-				+1.5