Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05600

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
1,261,888	+		PFLU_RS05595	0.17	-0.9
1,261,888	+		PFLU_RS05595	0.17	+0.2
1,261,888	+		PFLU_RS05595	0.17	+0.2
1,261,888	+		PFLU_RS05595	0.17	-0.7
1,261,888	+		PFLU_RS05595	0.17	-0.6
1,261,888	+		PFLU_RS05595	0.17	-1.4
1,261,888	+		PFLU_RS05595	0.17	-1.7
1,261,888	+		PFLU_RS05595	0.17	-0.9
1,261,888	+		PFLU_RS05595	0.17	-1.2
1,261,888	+		PFLU_RS05595	0.17	-1.1
1,261,889	-		PFLU_RS05595	0.17	+0.2
1,261,889	-		PFLU_RS05595	0.17	-1.5
1,261,889	-		PFLU_RS05595	0.17	+1.8
1,261,889	-		PFLU_RS05595	0.17	-0.2
1,261,889	-		PFLU_RS05595	0.17	-0.7
1,261,889	-		PFLU_RS05595	0.17	+2.6
1,261,889	-		PFLU_RS05595	0.17	-0.4
1,261,889	-		PFLU_RS05595	0.17	-0.9
1,261,889	-		PFLU_RS05595	0.17	-0.1
1,261,889	-		PFLU_RS05595	0.17	-0.8
1,261,896	+		PFLU_RS05595	0.18	+0.7
1,261,957	+		PFLU_RS05595	0.25	+0.4
1,262,050	+		PFLU_RS05595	0.35	-0.2
1,262,051	-		PFLU_RS05595	0.35	-0.4
1,262,051	-		PFLU_RS05595	0.35	-0.6
1,262,051	-		PFLU_RS05595	0.35	-1.6
1,262,051	-		PFLU_RS05595	0.35	-0.5
1,262,095	+		PFLU_RS05595	0.40	-0.9
1,262,095	+		PFLU_RS05595	0.40	+0.0
1,262,096	-		PFLU_RS05595	0.40	+1.0
1,262,096	-		PFLU_RS05595	0.40	-1.5
1,262,096	-		PFLU_RS05595	0.40	+0.1
1,262,096	-		PFLU_RS05595	0.40	+2.0
1,262,096	-		PFLU_RS05595	0.40	+1.4
1,262,096	-		PFLU_RS05595	0.40	-1.5
1,262,096	-		PFLU_RS05595	0.40	-1.0
1,262,113	+		PFLU_RS05595	0.42	-1.0
1,262,113	+		PFLU_RS05595	0.42	-1.1
1,262,113	+		PFLU_RS05595	0.42	-0.3
1,262,113	+		PFLU_RS05595	0.42	-0.9
1,262,113	+		PFLU_RS05595	0.42	-0.0
1,262,114	-		PFLU_RS05595	0.42	+2.2
1,262,114	-		PFLU_RS05595	0.42	-0.0
1,262,114	-		PFLU_RS05595	0.42	+0.5
1,262,212	+		PFLU_RS05595	0.53	-1.5
1,262,369	+		PFLU_RS05595	0.71	-2.2
1,262,370	-		PFLU_RS05595	0.71	+0.9
1,262,428	+		PFLU_RS05595	0.77	+0.4
1,262,429	-		PFLU_RS05595	0.77	+0.8
1,262,483	-		PFLU_RS05595	0.83	-0.1
1,262,528	+		PFLU_RS05595	0.88	+0.4
1,262,528	+		PFLU_RS05595	0.88	-1.3
1,262,529	-		PFLU_RS05595	0.89	-0.6
1,262,559	-				+1.7
1,262,559	-				-0.8
1,262,559	-				-0.7
1,262,559	-				+2.0
1,262,559	-				-1.8
1,262,559	-				+1.6
1,262,559	-				-1.0
1,262,563	-				+1.3
1,262,563	-				-2.3
1,262,563	-				+3.4
1,262,563	-				+1.3
1,262,563	-				+2.6
1,262,563	-				+3.7
1,262,563	-				-1.8
1,262,563	-				-0.5
1,262,630	-				-0.9
1,262,630	-				-0.6
1,262,650	-				-1.6
1,262,720	-				-2.3
1,262,720	-				-1.1
1,262,720	-				+1.0
1,262,841	+				-0.3
1,262,841	+				-1.0
1,262,841	+				+2.3
1,262,842	-				-1.2
1,262,844	+				+0.5
1,262,844	+				-0.1
1,262,845	-				+0.6
1,262,845	-				-1.2
1,262,845	-				-1.4
1,262,845	-				-0.6
1,262,845	-				+2.9
1,262,845	-				+0.9
1,262,845	-				-1.2
1,262,845	-				+1.7
1,262,889	+		PFLU_RS05600	0.12	-1.2
1,262,889	+		PFLU_RS05600	0.12	-1.1
1,262,890	-		PFLU_RS05600	0.12	+0.2
1,262,901	+		PFLU_RS05600	0.13	-0.1
1,263,039	+		PFLU_RS05600	0.26	+1.7
1,263,039	+		PFLU_RS05600	0.26	+2.0
1,263,039	+		PFLU_RS05600	0.26	+1.5
1,263,039	+		PFLU_RS05600	0.26	+0.4
1,263,039	+		PFLU_RS05600	0.26	-0.9
1,263,040	-		PFLU_RS05600	0.26	-0.1
1,263,040	-		PFLU_RS05600	0.26	-1.2
1,263,040	-		PFLU_RS05600	0.26	-0.4
1,263,040	-		PFLU_RS05600	0.26	+0.1
1,263,040	-		PFLU_RS05600	0.26	+0.6
1,263,040	-		PFLU_RS05600	0.26	-1.5
1,263,303	+		PFLU_RS05600	0.49	+0.4
1,263,304	-		PFLU_RS05600	0.49	+3.8
1,263,304	-		PFLU_RS05600	0.49	+1.9
1,263,423	+		PFLU_RS05600	0.60	-1.4
1,263,423	+		PFLU_RS05600	0.60	+0.1
1,263,423	+		PFLU_RS05600	0.60	+2.0
1,263,423	+		PFLU_RS05600	0.60	-1.2
1,263,423	+		PFLU_RS05600	0.60	-2.5
1,263,424	-		PFLU_RS05600	0.60	-1.0
1,263,424	-		PFLU_RS05600	0.60	-1.6
1,263,477	+		PFLU_RS05600	0.65	-0.3
1,263,477	+		PFLU_RS05600	0.65	-0.0
1,263,477	+		PFLU_RS05600	0.65	+0.7
1,263,477	+		PFLU_RS05600	0.65	+2.0
1,263,478	-		PFLU_RS05600	0.65	-1.8
1,263,478	-		PFLU_RS05600	0.65	-1.5
1,263,478	-		PFLU_RS05600	0.65	+0.6
1,263,478	-		PFLU_RS05600	0.65	-1.2
1,263,528	+		PFLU_RS05600	0.69	-0.2
1,263,630	+		PFLU_RS05600	0.78	-1.4
1,263,630	+		PFLU_RS05600	0.78	-0.1
1,263,630	+		PFLU_RS05600	0.78	+2.4
1,263,630	+		PFLU_RS05600	0.78	+0.9
1,263,630	+		PFLU_RS05600	0.78	-0.2
1,263,630	+		PFLU_RS05600	0.78	-1.9
1,263,630	+		PFLU_RS05600	0.78	+1.7
1,263,631	-		PFLU_RS05600	0.78	-1.7
1,263,631	-		PFLU_RS05600	0.78	-0.2
1,263,631	-		PFLU_RS05600	0.78	+0.3
1,263,631	-		PFLU_RS05600	0.78	-1.3
1,263,639	+		PFLU_RS05600	0.79	-1.5
1,263,639	+		PFLU_RS05600	0.79	-1.3
1,263,639	+		PFLU_RS05600	0.79	-2.5
1,263,640	-		PFLU_RS05600	0.79	-0.2
1,263,640	-		PFLU_RS05600	0.79	+1.1
1,263,640	-		PFLU_RS05600	0.79	-0.0
1,263,669	+		PFLU_RS05600	0.82	-1.8
1,263,669	+		PFLU_RS05600	0.82	-1.2
1,263,669	+		PFLU_RS05600	0.82	-1.7
1,263,669	+		PFLU_RS05600	0.82	+1.4
1,263,669	+		PFLU_RS05600	0.82	+1.1
1,263,670	-		PFLU_RS05600	0.82	+1.4
1,263,670	-		PFLU_RS05600	0.82	-0.0
1,263,674	+		PFLU_RS05600	0.82	-0.4
1,263,674	+		PFLU_RS05600	0.82	-2.9
1,263,674	+		PFLU_RS05600	0.82	-0.3
1,263,674	+		PFLU_RS05600	0.82	+2.4
1,263,674	+		PFLU_RS05600	0.82	+2.2
1,263,674	+		PFLU_RS05600	0.82	-0.4
1,263,675	-		PFLU_RS05600	0.82	-2.3
1,263,675	-		PFLU_RS05600	0.82	+2.2
1,263,675	-		PFLU_RS05600	0.82	-2.4
1,263,675	-		PFLU_RS05600	0.82	-1.1
1,263,675	-		PFLU_RS05600	0.82	+2.0
1,263,686	+		PFLU_RS05600	0.83	+1.3
1,263,687	-		PFLU_RS05600	0.83	-0.8
1,263,687	-		PFLU_RS05600	0.83	-1.6
1,263,687	-		PFLU_RS05600	0.83	-0.0
1,263,696	+		PFLU_RS05600	0.84	+0.5
1,263,696	+		PFLU_RS05600	0.84	+1.4
1,263,696	+		PFLU_RS05600	0.84	+1.8
1,263,696	+		PFLU_RS05600	0.84	-1.6
1,263,696	+		PFLU_RS05600	0.84	-1.3
1,263,696	+		PFLU_RS05600	0.84	-1.2
1,263,696	+		PFLU_RS05600	0.84	+0.5
1,263,696	+		PFLU_RS05600	0.84	-1.3
1,263,696	+		PFLU_RS05600	0.84	-2.6
1,263,696	+		PFLU_RS05600	0.84	-1.2
1,263,696	+		PFLU_RS05600	0.84	+2.5
1,263,697	-		PFLU_RS05600	0.84	-0.3
1,263,697	-		PFLU_RS05600	0.84	+1.5
1,263,697	-		PFLU_RS05600	0.84	-0.0
1,263,697	-		PFLU_RS05600	0.84	-2.8
1,263,697	-		PFLU_RS05600	0.84	+1.6
1,263,697	-		PFLU_RS05600	0.84	-0.9
1,263,697	-		PFLU_RS05600	0.84	+1.9
1,263,697	-		PFLU_RS05600	0.84	-0.3
1,263,697	-		PFLU_RS05600	0.84	-1.2
1,263,725	+		PFLU_RS05600	0.87	-0.1
1,263,726	-		PFLU_RS05600	0.87	-1.9
1,263,726	-		PFLU_RS05600	0.87	+2.1
1,263,811	+				+1.3
1,263,811	+				-2.9
1,263,812	-				-1.7
1,263,812	-				+2.2
1,263,863	-				-1.6
1,264,130	+		PFLU_RS05605	0.14	+3.2
1,264,130	+		PFLU_RS05605	0.14	+0.3
1,264,131	-		PFLU_RS05605	0.14	-1.6
1,264,131	-		PFLU_RS05605	0.14	-0.5
1,264,344	+		PFLU_RS05605	0.26	+0.5
1,264,344	+		PFLU_RS05605	0.26	+2.2
1,264,344	+		PFLU_RS05605	0.26	-1.9
1,264,344	+		PFLU_RS05605	0.26	+0.2
1,264,344	+		PFLU_RS05605	0.26	-2.2
1,264,345	-		PFLU_RS05605	0.27	-2.0
1,264,345	-		PFLU_RS05605	0.27	-2.3
1,264,385	+		PFLU_RS05605	0.29	-1.7
1,264,385	+		PFLU_RS05605	0.29	+1.0
1,264,385	+		PFLU_RS05605	0.29	+2.0
1,264,386	-		PFLU_RS05605	0.29	-0.9
1,264,386	-		PFLU_RS05605	0.29	-1.1
1,264,386	-		PFLU_RS05605	0.29	-0.1
1,264,386	-		PFLU_RS05605	0.29	+0.6
1,264,406	+		PFLU_RS05605	0.30	+1.9
1,264,406	+		PFLU_RS05605	0.30	-0.6
1,264,406	+		PFLU_RS05605	0.30	+1.4
1,264,407	-		PFLU_RS05605	0.30	-0.4
1,264,407	-		PFLU_RS05605	0.30	-0.4
1,264,407	-		PFLU_RS05605	0.30	-0.0
1,264,407	-		PFLU_RS05605	0.30	+0.9
1,264,464	+		PFLU_RS05605	0.33	-1.4
1,264,464	+		PFLU_RS05605	0.33	-1.2
1,264,464	+		PFLU_RS05605	0.33	-0.2
1,264,466	+		PFLU_RS05605	0.33	+1.0
1,264,466	+		PFLU_RS05605	0.33	+0.8
1,264,466	+		PFLU_RS05605	0.33	-2.0
1,264,466	+		PFLU_RS05605	0.33	-0.9
1,264,467	-		PFLU_RS05605	0.33	-1.0
1,264,467	-		PFLU_RS05605	0.33	-2.0
1,264,597	+		PFLU_RS05605	0.41	-0.2
1,264,597	+		PFLU_RS05605	0.41	+1.2
1,264,597	+		PFLU_RS05605	0.41	+1.3
1,264,598	-		PFLU_RS05605	0.41	-1.1
1,264,598	-		PFLU_RS05605	0.41	-1.1
1,264,601	+		PFLU_RS05605	0.41	-0.3
1,264,601	+		PFLU_RS05605	0.41	-2.3
1,264,601	+		PFLU_RS05605	0.41	-1.2
1,264,601	+		PFLU_RS05605	0.41	-0.8
1,264,601	+		PFLU_RS05605	0.41	+2.7
1,264,601	+		PFLU_RS05605	0.41	-1.1
1,264,601	+		PFLU_RS05605	0.41	+0.2
1,264,601	+		PFLU_RS05605	0.41	-0.7
1,264,601	+		PFLU_RS05605	0.41	-0.6
1,264,601	+		PFLU_RS05605	0.41	-0.4
1,264,601	+		PFLU_RS05605	0.41	+0.6
1,264,602	-		PFLU_RS05605	0.41	+2.1
1,264,602	-		PFLU_RS05605	0.41	+1.4
1,264,602	-		PFLU_RS05605	0.41	-0.3
1,264,602	-		PFLU_RS05605	0.41	+1.2
1,264,602	-		PFLU_RS05605	0.41	+1.8
1,264,613	+		PFLU_RS05605	0.42	-1.1
1,264,613	+		PFLU_RS05605	0.42	+2.4
1,264,613	+		PFLU_RS05605	0.42	+0.2
1,264,613	+		PFLU_RS05605	0.42	+3.2
1,264,614	-		PFLU_RS05605	0.42	+0.1
1,264,614	-		PFLU_RS05605	0.42	-1.0