Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21700

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21690 and ABZR87_RS21695 are separated by 154 nucleotidesABZR87_RS21695 and ABZR87_RS21700 are separated by 37 nucleotidesABZR87_RS21700 and ABZR87_RS21705 are separated by 35 nucleotides ABZR87_RS21690: ABZR87_RS21690 - HIT family protein, at 1,251,421 to 1,251,855 _RS21690 ABZR87_RS21695: ABZR87_RS21695 - PadR family transcriptional regulator, at 1,252,010 to 1,252,639 _RS21695 ABZR87_RS21700: ABZR87_RS21700 - hypothetical protein, at 1,252,677 to 1,252,856 _RS21700 ABZR87_RS21705: ABZR87_RS21705 - CusA/CzcA family heavy metal efflux RND transporter, at 1,252,892 to 1,256,062 _RS21705 Position (kb) 1252 1253Strain fitness (log2 ratio) -1 0 1at 1251.854 kb on - strandat 1251.854 kb on - strandat 1252.080 kb on - strand, within ABZR87_RS21695at 1252.136 kb on + strand, within ABZR87_RS21695at 1252.148 kb on + strand, within ABZR87_RS21695at 1252.148 kb on + strand, within ABZR87_RS21695at 1252.149 kb on - strand, within ABZR87_RS21695at 1252.235 kb on + strand, within ABZR87_RS21695at 1252.310 kb on + strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.333 kb on - strand, within ABZR87_RS21695at 1252.764 kb on + strand, within ABZR87_RS21700at 1252.765 kb on - strand, within ABZR87_RS21700at 1252.954 kb on - strandat 1252.966 kb on - strandat 1253.150 kb on + strandat 1253.150 kb on + strandat 1253.278 kb on + strand, within ABZR87_RS21705at 1253.832 kb on + strand, within ABZR87_RS21705at 1253.833 kb on - strand, within ABZR87_RS21705at 1253.833 kb on - strand, within ABZR87_RS21705

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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1,251,854 - +0.3
1,251,854 - +1.3
1,252,080 - ABZR87_RS21695 0.11 -0.2
1,252,136 + ABZR87_RS21695 0.20 -0.1
1,252,148 + ABZR87_RS21695 0.22 +1.7
1,252,148 + ABZR87_RS21695 0.22 +0.2
1,252,149 - ABZR87_RS21695 0.22 -1.2
1,252,235 + ABZR87_RS21695 0.36 +1.3
1,252,310 + ABZR87_RS21695 0.48 -0.1
1,252,311 - ABZR87_RS21695 0.48 -0.8
1,252,311 - ABZR87_RS21695 0.48 -0.1
1,252,311 - ABZR87_RS21695 0.48 -1.0
1,252,311 - ABZR87_RS21695 0.48 +0.7
1,252,311 - ABZR87_RS21695 0.48 -0.3
1,252,333 - ABZR87_RS21695 0.51 +0.1
1,252,764 + ABZR87_RS21700 0.48 -0.7
1,252,765 - ABZR87_RS21700 0.49 +1.1
1,252,954 - +1.7
1,252,966 - +0.8
1,253,150 + -0.1
1,253,150 + +0.4
1,253,278 + ABZR87_RS21705 0.12 +0.5
1,253,832 + ABZR87_RS21705 0.30 +0.6
1,253,833 - ABZR87_RS21705 0.30 -0.7
1,253,833 - ABZR87_RS21705 0.30 +0.3

Or see this region's nucleotide sequence