Experiment: nitrogen source nitrite 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18915 and ABZR87_RS18920 are separated by 13 nucleotides ABZR87_RS18920 and ABZR87_RS18925 are separated by 14 nucleotides ABZR87_RS18925 and ABZR87_RS18930 are separated by 102 nucleotides
ABZR87_RS18915: ABZR87_RS18915 - MATE family efflux transporter, at 600,864 to 602,231
_RS18915
ABZR87_RS18920: ABZR87_RS18920 - Rieske (2Fe-2S) protein, at 602,245 to 602,556
_RS18920
ABZR87_RS18925: ABZR87_RS18925 - alpha/beta hydrolase, at 602,571 to 603,146
_RS18925
ABZR87_RS18930: ABZR87_RS18930 - porin, at 603,249 to 604,382
_RS18930
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2 at 601.695 kb on + strand, within ABZR87_RS18915 at 601.722 kb on + strand, within ABZR87_RS18915 at 601.722 kb on + strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.796 kb on + strand, within ABZR87_RS18915 at 602.172 kb on + strand at 602.172 kb on + strand at 602.173 kb on - strand at 602.176 kb on - strand at 602.246 kb on + strand at 602.247 kb on - strand at 602.448 kb on - strand, within ABZR87_RS18920 at 602.497 kb on + strand, within ABZR87_RS18920 at 602.497 kb on + strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.812 kb on + strand, within ABZR87_RS18925 at 603.313 kb on + strand at 603.373 kb on + strand, within ABZR87_RS18930 at 603.373 kb on + strand, within ABZR87_RS18930 at 603.373 kb on + strand, within ABZR87_RS18930 at 603.374 kb on - strand, within ABZR87_RS18930 at 603.388 kb on + strand, within ABZR87_RS18930 at 603.415 kb on + strand, within ABZR87_RS18930 at 603.416 kb on - strand, within ABZR87_RS18930 at 603.496 kb on + strand, within ABZR87_RS18930 at 603.496 kb on + strand, within ABZR87_RS18930 at 603.532 kb on + strand, within ABZR87_RS18930 at 603.533 kb on - strand, within ABZR87_RS18930 at 603.553 kb on + strand, within ABZR87_RS18930 at 603.553 kb on + strand, within ABZR87_RS18930 at 603.643 kb on + strand, within ABZR87_RS18930 at 603.644 kb on - strand, within ABZR87_RS18930 at 603.718 kb on + strand, within ABZR87_RS18930 at 603.719 kb on - strand, within ABZR87_RS18930 at 603.761 kb on - strand, within ABZR87_RS18930 at 603.904 kb on + strand, within ABZR87_RS18930 at 603.904 kb on + strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.961 kb on + strand, within ABZR87_RS18930 at 603.961 kb on + strand, within ABZR87_RS18930 at 603.973 kb on + strand, within ABZR87_RS18930 at 603.974 kb on - strand, within ABZR87_RS18930 at 603.974 kb on - strand, within ABZR87_RS18930 at 604.019 kb on - strand, within ABZR87_RS18930 at 604.069 kb on + strand, within ABZR87_RS18930 at 604.069 kb on + strand, within ABZR87_RS18930 at 604.070 kb on - strand, within ABZR87_RS18930
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM remove 601,695 + ABZR87_RS18915 0.61 -0.3 601,722 + ABZR87_RS18915 0.63 +0.1 601,722 + ABZR87_RS18915 0.63 +0.2 601,723 - ABZR87_RS18915 0.63 +0.7 601,723 - ABZR87_RS18915 0.63 -0.3 601,723 - ABZR87_RS18915 0.63 +0.7 601,796 + ABZR87_RS18915 0.68 +0.4 602,172 + +0.3 602,172 + -0.8 602,173 - -0.4 602,176 - -0.8 602,246 + -1.7 602,247 - +0.0 602,448 - ABZR87_RS18920 0.65 -0.3 602,497 + ABZR87_RS18920 0.81 -1.2 602,497 + ABZR87_RS18920 0.81 +0.5 602,498 - ABZR87_RS18920 0.81 +0.3 602,498 - ABZR87_RS18920 0.81 +0.2 602,498 - ABZR87_RS18920 0.81 -0.0 602,812 + ABZR87_RS18925 0.42 -0.3 603,313 + +0.9 603,373 + ABZR87_RS18930 0.11 -0.9 603,373 + ABZR87_RS18930 0.11 -0.9 603,373 + ABZR87_RS18930 0.11 -1.0 603,374 - ABZR87_RS18930 0.11 +0.1 603,388 + ABZR87_RS18930 0.12 +1.6 603,415 + ABZR87_RS18930 0.15 +1.4 603,416 - ABZR87_RS18930 0.15 +0.4 603,496 + ABZR87_RS18930 0.22 +0.1 603,496 + ABZR87_RS18930 0.22 -1.1 603,532 + ABZR87_RS18930 0.25 +0.1 603,533 - ABZR87_RS18930 0.25 -2.0 603,553 + ABZR87_RS18930 0.27 +1.3 603,553 + ABZR87_RS18930 0.27 -1.2 603,643 + ABZR87_RS18930 0.35 +0.3 603,644 - ABZR87_RS18930 0.35 +0.2 603,718 + ABZR87_RS18930 0.41 +0.4 603,719 - ABZR87_RS18930 0.41 -1.7 603,761 - ABZR87_RS18930 0.45 -0.8 603,904 + ABZR87_RS18930 0.58 -0.6 603,904 + ABZR87_RS18930 0.58 -0.3 603,905 - ABZR87_RS18930 0.58 -0.2 603,905 - ABZR87_RS18930 0.58 -0.1 603,905 - ABZR87_RS18930 0.58 -0.4 603,905 - ABZR87_RS18930 0.58 -0.6 603,961 + ABZR87_RS18930 0.63 +1.8 603,961 + ABZR87_RS18930 0.63 -1.1 603,973 + ABZR87_RS18930 0.64 +0.3 603,974 - ABZR87_RS18930 0.64 -0.1 603,974 - ABZR87_RS18930 0.64 -1.1 604,019 - ABZR87_RS18930 0.68 -0.7 604,069 + ABZR87_RS18930 0.72 +0.9 604,069 + ABZR87_RS18930 0.72 -0.1 604,070 - ABZR87_RS18930 0.72 -0.2
Or see this region's nucleotide sequence