Experiment: nitrogen source nitrite 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18095 and ABZR87_RS18100 are separated by 8 nucleotides ABZR87_RS18100 and ABZR87_RS18105 overlap by 4 nucleotides ABZR87_RS18105 and ABZR87_RS18110 are separated by 103 nucleotides ABZR87_RS18110 and ABZR87_RS18115 are separated by 116 nucleotides
ABZR87_RS18095: ABZR87_RS18095 - hypothetical protein, at 424,226 to 424,900
_RS18095
ABZR87_RS18100: ABZR87_RS18100 - type III secretion system inner membrane ring lipoprotein SctJ, at 424,909 to 425,730
_RS18100
ABZR87_RS18105: ABZR87_RS18105 - hypothetical protein, at 425,727 to 426,152
_RS18105
ABZR87_RS18110: ABZR87_RS18110 - hypothetical protein, at 426,256 to 426,468
_RS18110
ABZR87_RS18115: ABZR87_RS18115 - FHA domain-containing protein, at 426,585 to 427,856
_RS18115
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.026 kb on + strand, within ABZR87_RS18100 at 425.026 kb on + strand, within ABZR87_RS18100 at 425.090 kb on + strand, within ABZR87_RS18100 at 425.169 kb on - strand, within ABZR87_RS18100 at 425.255 kb on + strand, within ABZR87_RS18100 at 425.311 kb on + strand, within ABZR87_RS18100 at 425.384 kb on + strand, within ABZR87_RS18100 at 425.384 kb on + strand, within ABZR87_RS18100 at 425.385 kb on - strand, within ABZR87_RS18100 at 425.391 kb on - strand, within ABZR87_RS18100 at 425.391 kb on - strand, within ABZR87_RS18100 at 425.840 kb on + strand, within ABZR87_RS18105 at 425.980 kb on - strand, within ABZR87_RS18105 at 426.236 kb on + strand at 426.236 kb on + strand at 426.237 kb on - strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.255 kb on - strand at 426.255 kb on - strand at 426.817 kb on + strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.868 kb on + strand, within ABZR87_RS18115 at 426.869 kb on - strand, within ABZR87_RS18115 at 426.938 kb on - strand, within ABZR87_RS18115 at 426.938 kb on - strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.124 kb on - strand, within ABZR87_RS18115 at 427.124 kb on - strand, within ABZR87_RS18115
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM remove 425,026 + ABZR87_RS18100 0.14 +0.7 425,026 + ABZR87_RS18100 0.14 -1.9 425,090 + ABZR87_RS18100 0.22 +0.2 425,169 - ABZR87_RS18100 0.32 +0.4 425,255 + ABZR87_RS18100 0.42 -0.8 425,311 + ABZR87_RS18100 0.49 +0.5 425,384 + ABZR87_RS18100 0.58 +0.3 425,384 + ABZR87_RS18100 0.58 +0.9 425,385 - ABZR87_RS18100 0.58 +1.4 425,391 - ABZR87_RS18100 0.59 +0.1 425,391 - ABZR87_RS18100 0.59 -0.3 425,840 + ABZR87_RS18105 0.27 +2.1 425,980 - ABZR87_RS18105 0.59 +0.8 426,236 + +0.1 426,236 + +0.5 426,237 - +0.3 426,254 + +1.5 426,254 + +0.2 426,254 + -0.7 426,254 + +1.4 426,254 + +0.4 426,254 + +1.0 426,255 - +1.1 426,255 - -3.3 426,817 + ABZR87_RS18115 0.18 -2.0 426,818 - ABZR87_RS18115 0.18 -0.1 426,818 - ABZR87_RS18115 0.18 +1.2 426,818 - ABZR87_RS18115 0.18 +1.9 426,868 + ABZR87_RS18115 0.22 +0.4 426,869 - ABZR87_RS18115 0.22 +1.1 426,938 - ABZR87_RS18115 0.28 -0.1 426,938 - ABZR87_RS18115 0.28 -1.7 427,123 + ABZR87_RS18115 0.42 -0.2 427,123 + ABZR87_RS18115 0.42 -0.0 427,123 + ABZR87_RS18115 0.42 +0.6 427,123 + ABZR87_RS18115 0.42 +0.3 427,123 + ABZR87_RS18115 0.42 +0.9 427,123 + ABZR87_RS18115 0.42 +0.7 427,123 + ABZR87_RS18115 0.42 -0.4 427,124 - ABZR87_RS18115 0.42 +0.3 427,124 - ABZR87_RS18115 0.42 +0.1
Or see this region's nucleotide sequence