Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16505

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16500 and ABZR87_RS16505 are separated by 618 nucleotidesABZR87_RS16505 and ABZR87_RS16510 are separated by 103 nucleotidesABZR87_RS16510 and ABZR87_RS16515 are separated by 110 nucleotides ABZR87_RS16500: ABZR87_RS16500 - PAS domain S-box protein, at 51,378 to 53,772 _RS16500 ABZR87_RS16505: ABZR87_RS16505 - hypothetical protein, at 54,391 to 54,744 _RS16505 ABZR87_RS16510: ABZR87_RS16510 - DUF2076 family protein, at 54,848 to 55,573 _RS16510 ABZR87_RS16515: ABZR87_RS16515 - helix-turn-helix domain-containing protein, at 55,684 to 56,655 _RS16515 Position (kb) 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 53.701 kb on + strandat 53.701 kb on + strandat 53.701 kb on + strandat 53.701 kb on + strandat 53.702 kb on - strandat 53.756 kb on + strandat 53.770 kb on + strandat 53.771 kb on - strandat 53.791 kb on + strandat 53.836 kb on + strandat 53.836 kb on + strandat 53.836 kb on + strandat 53.837 kb on - strandat 53.837 kb on - strandat 53.837 kb on - strandat 53.837 kb on - strandat 54.159 kb on - strandat 54.159 kb on - strandat 54.160 kb on + strandat 54.160 kb on + strandat 54.161 kb on - strandat 54.161 kb on - strandat 54.245 kb on + strandat 54.245 kb on + strandat 54.245 kb on + strandat 54.245 kb on + strandat 54.260 kb on + strandat 54.260 kb on + strandat 54.285 kb on - strandat 54.376 kb on - strandat 54.376 kb on - strandat 54.390 kb on + strandat 54.390 kb on + strandat 54.391 kb on - strandat 54.391 kb on - strandat 54.406 kb on + strandat 54.485 kb on - strand, within ABZR87_RS16505at 54.515 kb on - strand, within ABZR87_RS16505at 54.515 kb on - strand, within ABZR87_RS16505at 54.652 kb on + strand, within ABZR87_RS16505at 54.652 kb on + strand, within ABZR87_RS16505at 54.652 kb on + strand, within ABZR87_RS16505at 54.652 kb on + strand, within ABZR87_RS16505at 54.652 kb on + strand, within ABZR87_RS16505at 54.652 kb on + strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.653 kb on - strand, within ABZR87_RS16505at 54.731 kb on - strandat 54.732 kb on + strandat 54.732 kb on + strandat 54.743 kb on - strandat 54.850 kb on - strandat 54.850 kb on - strandat 54.850 kb on - strandat 54.876 kb on + strandat 54.944 kb on - strand, within ABZR87_RS16510at 54.987 kb on + strand, within ABZR87_RS16510at 54.987 kb on + strand, within ABZR87_RS16510at 54.987 kb on + strand, within ABZR87_RS16510at 54.987 kb on + strand, within ABZR87_RS16510at 54.988 kb on - strand, within ABZR87_RS16510at 54.988 kb on - strand, within ABZR87_RS16510at 54.990 kb on + strand, within ABZR87_RS16510at 54.990 kb on + strand, within ABZR87_RS16510at 55.100 kb on + strand, within ABZR87_RS16510at 55.100 kb on + strand, within ABZR87_RS16510at 55.101 kb on - strand, within ABZR87_RS16510at 55.269 kb on + strand, within ABZR87_RS16510at 55.269 kb on + strand, within ABZR87_RS16510at 55.269 kb on + strand, within ABZR87_RS16510at 55.269 kb on + strand, within ABZR87_RS16510at 55.336 kb on + strand, within ABZR87_RS16510at 55.336 kb on + strand, within ABZR87_RS16510at 55.336 kb on + strand, within ABZR87_RS16510at 55.337 kb on - strand, within ABZR87_RS16510at 55.444 kb on - strand, within ABZR87_RS16510at 55.444 kb on - strand, within ABZR87_RS16510at 55.614 kb on + strandat 55.614 kb on + strandat 55.614 kb on + strandat 55.615 kb on - strandat 55.672 kb on - strandat 55.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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53,701 + -1.2
53,701 + -1.7
53,701 + +0.5
53,701 + -0.2
53,702 - -0.3
53,756 + -0.0
53,770 + +0.1
53,771 - -0.4
53,791 + -2.4
53,836 + -1.9
53,836 + +0.9
53,836 + -0.3
53,837 - +0.3
53,837 - +0.7
53,837 - +0.8
53,837 - -0.0
54,159 - +0.6
54,159 - -0.6
54,160 + -0.2
54,160 + -0.7
54,161 - +0.4
54,161 - -0.8
54,245 + +0.5
54,245 + +0.4
54,245 + -0.1
54,245 + +0.1
54,260 + +0.9
54,260 + +2.0
54,285 - +1.1
54,376 - -0.2
54,376 - +1.0
54,390 + -0.6
54,390 + +0.7
54,391 - +0.5
54,391 - +1.1
54,406 + -0.6
54,485 - ABZR87_RS16505 0.27 -0.9
54,515 - ABZR87_RS16505 0.35 -0.5
54,515 - ABZR87_RS16505 0.35 -0.6
54,652 + ABZR87_RS16505 0.74 -2.6
54,652 + ABZR87_RS16505 0.74 +1.7
54,652 + ABZR87_RS16505 0.74 +0.4
54,652 + ABZR87_RS16505 0.74 +0.3
54,652 + ABZR87_RS16505 0.74 -1.1
54,652 + ABZR87_RS16505 0.74 -2.2
54,653 - ABZR87_RS16505 0.74 -0.4
54,653 - ABZR87_RS16505 0.74 -1.3
54,653 - ABZR87_RS16505 0.74 -0.7
54,653 - ABZR87_RS16505 0.74 -1.6
54,653 - ABZR87_RS16505 0.74 -0.4
54,653 - ABZR87_RS16505 0.74 -1.4
54,653 - ABZR87_RS16505 0.74 +0.0
54,653 - ABZR87_RS16505 0.74 +0.1
54,653 - ABZR87_RS16505 0.74 +0.1
54,653 - ABZR87_RS16505 0.74 -0.1
54,653 - ABZR87_RS16505 0.74 -0.1
54,653 - ABZR87_RS16505 0.74 -0.8
54,731 - -1.6
54,732 + +1.2
54,732 + -0.3
54,743 - -0.4
54,850 - +0.2
54,850 - -0.4
54,850 - +0.5
54,876 + +1.8
54,944 - ABZR87_RS16510 0.13 -3.2
54,987 + ABZR87_RS16510 0.19 -0.9
54,987 + ABZR87_RS16510 0.19 -0.9
54,987 + ABZR87_RS16510 0.19 +0.1
54,987 + ABZR87_RS16510 0.19 +0.6
54,988 - ABZR87_RS16510 0.19 +0.0
54,988 - ABZR87_RS16510 0.19 -0.1
54,990 + ABZR87_RS16510 0.20 -0.7
54,990 + ABZR87_RS16510 0.20 -0.5
55,100 + ABZR87_RS16510 0.35 -0.8
55,100 + ABZR87_RS16510 0.35 +0.3
55,101 - ABZR87_RS16510 0.35 -0.0
55,269 + ABZR87_RS16510 0.58 -0.0
55,269 + ABZR87_RS16510 0.58 -0.6
55,269 + ABZR87_RS16510 0.58 -1.1
55,269 + ABZR87_RS16510 0.58 +0.1
55,336 + ABZR87_RS16510 0.67 +0.7
55,336 + ABZR87_RS16510 0.67 -0.2
55,336 + ABZR87_RS16510 0.67 -0.1
55,337 - ABZR87_RS16510 0.67 -0.5
55,444 - ABZR87_RS16510 0.82 +0.7
55,444 - ABZR87_RS16510 0.82 +0.4
55,614 + -0.2
55,614 + -0.2
55,614 + +0.5
55,615 - +0.1
55,672 - +0.1
55,686 - +0.3

Or see this region's nucleotide sequence