Experiment: nitrogen source nitrite 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07725 and ABZR87_RS07730 overlap by 4 nucleotides ABZR87_RS07730 and ABZR87_RS07735 are separated by 11 nucleotides ABZR87_RS07735 and ABZR87_RS07740 are separated by 31 nucleotides
ABZR87_RS07725: ABZR87_RS07725 - SprT family zinc-dependent metalloprotease, at 1,637,814 to 1,638,692
_RS07725
ABZR87_RS07730: ABZR87_RS07730 - lysophospholipid acyltransferase family protein, at 1,638,689 to 1,639,441
_RS07730
ABZR87_RS07735: ABZR87_RS07735 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 1,639,453 to 1,640,031
_RS07735
ABZR87_RS07740: ABZR87_RS07740 - glycine--tRNA ligase subunit beta, at 1,640,063 to 1,642,156
_RS07740
Position (kb) 1639
1640
1641 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.493 kb on + strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.494 kb on - strand, within ABZR87_RS07725 at 1638.706 kb on - strand at 1638.706 kb on - strand at 1638.709 kb on + strand at 1638.710 kb on - strand at 1638.724 kb on + strand at 1638.817 kb on + strand, within ABZR87_RS07730 at 1639.109 kb on + strand, within ABZR87_RS07730 at 1639.109 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.113 kb on + strand, within ABZR87_RS07730 at 1639.114 kb on - strand, within ABZR87_RS07730 at 1639.133 kb on + strand, within ABZR87_RS07730 at 1639.134 kb on - strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.260 kb on + strand, within ABZR87_RS07730 at 1639.261 kb on - strand, within ABZR87_RS07730 at 1639.417 kb on - strand at 1639.589 kb on - strand, within ABZR87_RS07735 at 1639.785 kb on - strand, within ABZR87_RS07735 at 1639.802 kb on + strand, within ABZR87_RS07735 at 1639.802 kb on + strand, within ABZR87_RS07735 at 1639.802 kb on + strand, within ABZR87_RS07735 at 1639.802 kb on + strand, within ABZR87_RS07735 at 1639.803 kb on - strand, within ABZR87_RS07735 at 1639.803 kb on - strand, within ABZR87_RS07735 at 1639.803 kb on - strand, within ABZR87_RS07735
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM remove 1,638,493 + ABZR87_RS07725 0.77 +1.2 1,638,493 + ABZR87_RS07725 0.77 -0.2 1,638,493 + ABZR87_RS07725 0.77 -0.4 1,638,493 + ABZR87_RS07725 0.77 -0.5 1,638,493 + ABZR87_RS07725 0.77 +0.7 1,638,493 + ABZR87_RS07725 0.77 -1.2 1,638,494 - ABZR87_RS07725 0.77 +0.3 1,638,494 - ABZR87_RS07725 0.77 +0.6 1,638,494 - ABZR87_RS07725 0.77 -0.1 1,638,494 - ABZR87_RS07725 0.77 -0.0 1,638,494 - ABZR87_RS07725 0.77 -0.3 1,638,706 - +1.9 1,638,706 - +0.5 1,638,709 + -0.0 1,638,710 - +0.3 1,638,724 + +2.3 1,638,817 + ABZR87_RS07730 0.17 +4.0 1,639,109 + ABZR87_RS07730 0.56 -0.6 1,639,109 + ABZR87_RS07730 0.56 -1.2 1,639,113 + ABZR87_RS07730 0.56 +2.1 1,639,113 + ABZR87_RS07730 0.56 -0.6 1,639,113 + ABZR87_RS07730 0.56 +2.0 1,639,113 + ABZR87_RS07730 0.56 +1.0 1,639,114 - ABZR87_RS07730 0.56 +0.7 1,639,133 + ABZR87_RS07730 0.59 +3.0 1,639,134 - ABZR87_RS07730 0.59 -0.0 1,639,260 + ABZR87_RS07730 0.76 -2.3 1,639,260 + ABZR87_RS07730 0.76 +4.6 1,639,260 + ABZR87_RS07730 0.76 +2.0 1,639,261 - ABZR87_RS07730 0.76 +2.5 1,639,417 - -0.2 1,639,589 - ABZR87_RS07735 0.23 -0.6 1,639,785 - ABZR87_RS07735 0.57 +1.5 1,639,802 + ABZR87_RS07735 0.60 +2.7 1,639,802 + ABZR87_RS07735 0.60 +0.1 1,639,802 + ABZR87_RS07735 0.60 +0.2 1,639,802 + ABZR87_RS07735 0.60 +0.6 1,639,803 - ABZR87_RS07735 0.60 +1.7 1,639,803 - ABZR87_RS07735 0.60 +1.5 1,639,803 - ABZR87_RS07735 0.60 +0.4
Or see this region's nucleotide sequence