Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05240

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05235 and ABZR87_RS05240 are separated by 131 nucleotidesABZR87_RS05240 and ABZR87_RS05245 are separated by 15 nucleotidesABZR87_RS05245 and ABZR87_RS05250 overlap by 4 nucleotides ABZR87_RS05235: ABZR87_RS05235 - D-erythronate dehydrogenase, at 1,100,252 to 1,101,235 _RS05235 ABZR87_RS05240: ABZR87_RS05240 - FadR/GntR family transcriptional regulator, at 1,101,367 to 1,102,083 _RS05240 ABZR87_RS05245: ABZR87_RS05245 - L-threonate dehydrogenase, at 1,102,099 to 1,103,010 _RS05245 ABZR87_RS05250: ABZR87_RS05250 - 3-oxo-tetronate kinase, at 1,103,007 to 1,104,320 _RS05250 Position (kb) 1101 1102 1103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1100.459 kb on + strand, within ABZR87_RS05235at 1100.459 kb on + strand, within ABZR87_RS05235at 1100.460 kb on - strand, within ABZR87_RS05235at 1100.460 kb on - strand, within ABZR87_RS05235at 1100.470 kb on + strand, within ABZR87_RS05235at 1100.471 kb on - strand, within ABZR87_RS05235at 1100.526 kb on + strand, within ABZR87_RS05235at 1100.526 kb on + strand, within ABZR87_RS05235at 1100.526 kb on + strand, within ABZR87_RS05235at 1100.526 kb on + strand, within ABZR87_RS05235at 1100.526 kb on + strand, within ABZR87_RS05235at 1100.527 kb on - strand, within ABZR87_RS05235at 1100.527 kb on - strand, within ABZR87_RS05235at 1100.527 kb on - strand, within ABZR87_RS05235at 1100.721 kb on + strand, within ABZR87_RS05235at 1100.721 kb on + strand, within ABZR87_RS05235at 1100.721 kb on + strand, within ABZR87_RS05235at 1100.721 kb on + strand, within ABZR87_RS05235at 1100.722 kb on - strand, within ABZR87_RS05235at 1100.722 kb on - strand, within ABZR87_RS05235at 1100.722 kb on - strand, within ABZR87_RS05235at 1100.722 kb on - strand, within ABZR87_RS05235at 1100.722 kb on - strand, within ABZR87_RS05235at 1100.736 kb on + strand, within ABZR87_RS05235at 1100.737 kb on - strand, within ABZR87_RS05235at 1100.779 kb on - strand, within ABZR87_RS05235at 1100.779 kb on - strand, within ABZR87_RS05235at 1101.069 kb on + strand, within ABZR87_RS05235at 1101.069 kb on + strand, within ABZR87_RS05235at 1101.069 kb on + strand, within ABZR87_RS05235at 1101.069 kb on + strand, within ABZR87_RS05235at 1101.070 kb on - strand, within ABZR87_RS05235at 1101.070 kb on - strand, within ABZR87_RS05235at 1101.286 kb on + strandat 1101.286 kb on + strandat 1101.287 kb on - strandat 1101.291 kb on + strandat 1101.302 kb on - strandat 1101.323 kb on + strandat 1101.324 kb on - strandat 1101.583 kb on + strand, within ABZR87_RS05240at 1101.583 kb on + strand, within ABZR87_RS05240at 1101.583 kb on + strand, within ABZR87_RS05240at 1101.584 kb on - strand, within ABZR87_RS05240at 1101.584 kb on - strand, within ABZR87_RS05240at 1101.584 kb on - strand, within ABZR87_RS05240at 1101.883 kb on + strand, within ABZR87_RS05240at 1101.884 kb on - strand, within ABZR87_RS05240at 1101.884 kb on - strand, within ABZR87_RS05240at 1102.189 kb on + strandat 1102.190 kb on - strandat 1102.190 kb on - strandat 1102.462 kb on + strand, within ABZR87_RS05245at 1102.462 kb on + strand, within ABZR87_RS05245at 1102.462 kb on + strand, within ABZR87_RS05245at 1102.462 kb on + strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.547 kb on - strand, within ABZR87_RS05245at 1102.547 kb on - strand, within ABZR87_RS05245at 1102.547 kb on - strand, within ABZR87_RS05245at 1102.547 kb on - strand, within ABZR87_RS05245at 1102.709 kb on + strand, within ABZR87_RS05245at 1102.709 kb on + strand, within ABZR87_RS05245at 1102.709 kb on + strand, within ABZR87_RS05245at 1102.709 kb on + strand, within ABZR87_RS05245at 1102.726 kb on + strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.744 kb on - strand, within ABZR87_RS05245at 1102.801 kb on + strand, within ABZR87_RS05245at 1102.802 kb on - strand, within ABZR87_RS05245at 1102.802 kb on - strand, within ABZR87_RS05245at 1102.802 kb on - strand, within ABZR87_RS05245at 1102.896 kb on + strand, within ABZR87_RS05245at 1102.937 kb on - strandat 1102.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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1,100,459 + ABZR87_RS05235 0.21 +1.2
1,100,459 + ABZR87_RS05235 0.21 +1.3
1,100,460 - ABZR87_RS05235 0.21 +1.0
1,100,460 - ABZR87_RS05235 0.21 -1.2
1,100,470 + ABZR87_RS05235 0.22 +1.3
1,100,471 - ABZR87_RS05235 0.22 +0.1
1,100,526 + ABZR87_RS05235 0.28 -0.2
1,100,526 + ABZR87_RS05235 0.28 -0.3
1,100,526 + ABZR87_RS05235 0.28 -0.1
1,100,526 + ABZR87_RS05235 0.28 +2.3
1,100,526 + ABZR87_RS05235 0.28 -1.5
1,100,527 - ABZR87_RS05235 0.28 -0.2
1,100,527 - ABZR87_RS05235 0.28 +1.0
1,100,527 - ABZR87_RS05235 0.28 +1.3
1,100,721 + ABZR87_RS05235 0.48 +0.7
1,100,721 + ABZR87_RS05235 0.48 +2.1
1,100,721 + ABZR87_RS05235 0.48 +0.1
1,100,721 + ABZR87_RS05235 0.48 +0.4
1,100,722 - ABZR87_RS05235 0.48 +0.7
1,100,722 - ABZR87_RS05235 0.48 -0.9
1,100,722 - ABZR87_RS05235 0.48 +0.3
1,100,722 - ABZR87_RS05235 0.48 +0.0
1,100,722 - ABZR87_RS05235 0.48 +0.7
1,100,736 + ABZR87_RS05235 0.49 -0.9
1,100,737 - ABZR87_RS05235 0.49 -0.0
1,100,779 - ABZR87_RS05235 0.54 +0.6
1,100,779 - ABZR87_RS05235 0.54 +1.0
1,101,069 + ABZR87_RS05235 0.83 -0.4
1,101,069 + ABZR87_RS05235 0.83 +0.6
1,101,069 + ABZR87_RS05235 0.83 +0.6
1,101,069 + ABZR87_RS05235 0.83 -0.2
1,101,070 - ABZR87_RS05235 0.83 -0.6
1,101,070 - ABZR87_RS05235 0.83 +1.6
1,101,286 + +0.1
1,101,286 + +1.2
1,101,287 - -0.9
1,101,291 + -1.4
1,101,302 - +1.2
1,101,323 + -0.2
1,101,324 - -1.2
1,101,583 + ABZR87_RS05240 0.30 -0.5
1,101,583 + ABZR87_RS05240 0.30 +0.2
1,101,583 + ABZR87_RS05240 0.30 +2.8
1,101,584 - ABZR87_RS05240 0.30 +1.0
1,101,584 - ABZR87_RS05240 0.30 +0.5
1,101,584 - ABZR87_RS05240 0.30 +0.5
1,101,883 + ABZR87_RS05240 0.72 -0.0
1,101,884 - ABZR87_RS05240 0.72 +0.2
1,101,884 - ABZR87_RS05240 0.72 +1.1
1,102,189 + -0.4
1,102,190 - -0.0
1,102,190 - -0.3
1,102,462 + ABZR87_RS05245 0.40 +0.0
1,102,462 + ABZR87_RS05245 0.40 -0.0
1,102,462 + ABZR87_RS05245 0.40 +1.1
1,102,462 + ABZR87_RS05245 0.40 -0.7
1,102,463 - ABZR87_RS05245 0.40 +0.2
1,102,463 - ABZR87_RS05245 0.40 +0.2
1,102,463 - ABZR87_RS05245 0.40 +0.4
1,102,463 - ABZR87_RS05245 0.40 +0.3
1,102,463 - ABZR87_RS05245 0.40 -0.2
1,102,463 - ABZR87_RS05245 0.40 +1.1
1,102,463 - ABZR87_RS05245 0.40 -0.4
1,102,463 - ABZR87_RS05245 0.40 +1.0
1,102,546 + ABZR87_RS05245 0.49 -0.1
1,102,546 + ABZR87_RS05245 0.49 -1.4
1,102,546 + ABZR87_RS05245 0.49 +1.3
1,102,546 + ABZR87_RS05245 0.49 +1.0
1,102,546 + ABZR87_RS05245 0.49 -0.0
1,102,546 + ABZR87_RS05245 0.49 +0.5
1,102,546 + ABZR87_RS05245 0.49 +0.6
1,102,546 + ABZR87_RS05245 0.49 +1.3
1,102,546 + ABZR87_RS05245 0.49 +0.8
1,102,546 + ABZR87_RS05245 0.49 +0.5
1,102,547 - ABZR87_RS05245 0.49 -1.0
1,102,547 - ABZR87_RS05245 0.49 +0.2
1,102,547 - ABZR87_RS05245 0.49 +0.4
1,102,547 - ABZR87_RS05245 0.49 +0.7
1,102,709 + ABZR87_RS05245 0.67 +0.7
1,102,709 + ABZR87_RS05245 0.67 +0.2
1,102,709 + ABZR87_RS05245 0.67 +0.4
1,102,709 + ABZR87_RS05245 0.67 +0.1
1,102,726 + ABZR87_RS05245 0.69 +2.6
1,102,727 - ABZR87_RS05245 0.69 -0.1
1,102,727 - ABZR87_RS05245 0.69 -0.1
1,102,727 - ABZR87_RS05245 0.69 +0.3
1,102,727 - ABZR87_RS05245 0.69 -0.4
1,102,727 - ABZR87_RS05245 0.69 -2.6
1,102,727 - ABZR87_RS05245 0.69 +0.6
1,102,744 - ABZR87_RS05245 0.71 -0.0
1,102,801 + ABZR87_RS05245 0.77 -0.1
1,102,802 - ABZR87_RS05245 0.77 +0.2
1,102,802 - ABZR87_RS05245 0.77 +1.1
1,102,802 - ABZR87_RS05245 0.77 -0.6
1,102,896 + ABZR87_RS05245 0.87 -0.9
1,102,937 - +0.9
1,102,966 + +0.1

Or see this region's nucleotide sequence