Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04170

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04165 and ABZR87_RS04170 overlap by 15 nucleotidesABZR87_RS04170 and ABZR87_RS04175 are separated by 169 nucleotidesABZR87_RS04175 and ABZR87_RS04180 overlap by 11 nucleotides ABZR87_RS04165: ABZR87_RS04165 - SDR family oxidoreductase, at 872,576 to 873,544 _RS04165 ABZR87_RS04170: ABZR87_RS04170 - phosphonate degradation HD-domain oxygenase, at 873,530 to 874,081 _RS04170 ABZR87_RS04175: ABZR87_RS04175 - cupin domain-containing protein, at 874,251 to 874,628 _RS04175 ABZR87_RS04180: ABZR87_RS04180 - TSUP family transporter, at 874,618 to 875,376 _RS04180 Position (kb) 873 874 875Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 872.617 kb on - strandat 872.924 kb on + strand, within ABZR87_RS04165at 872.924 kb on + strand, within ABZR87_RS04165at 872.924 kb on + strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 873.191 kb on + strand, within ABZR87_RS04165at 873.191 kb on + strand, within ABZR87_RS04165at 873.192 kb on - strand, within ABZR87_RS04165at 873.192 kb on - strand, within ABZR87_RS04165at 873.192 kb on - strand, within ABZR87_RS04165at 873.192 kb on - strand, within ABZR87_RS04165at 873.263 kb on + strand, within ABZR87_RS04165at 873.264 kb on - strand, within ABZR87_RS04165at 873.422 kb on + strand, within ABZR87_RS04165at 873.422 kb on + strand, within ABZR87_RS04165at 873.423 kb on - strand, within ABZR87_RS04165at 873.423 kb on - strand, within ABZR87_RS04165at 873.532 kb on - strandat 873.532 kb on - strandat 873.532 kb on - strandat 873.717 kb on - strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.742 kb on - strand, within ABZR87_RS04170at 873.742 kb on - strand, within ABZR87_RS04170at 873.744 kb on + strand, within ABZR87_RS04170at 873.744 kb on + strand, within ABZR87_RS04170at 873.745 kb on - strand, within ABZR87_RS04170at 873.745 kb on - strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 874.024 kb on - strand, within ABZR87_RS04170at 874.024 kb on - strand, within ABZR87_RS04170at 874.117 kb on - strandat 874.158 kb on + strandat 874.159 kb on - strandat 874.216 kb on + strandat 874.217 kb on - strandat 874.217 kb on - strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.271 kb on - strandat 874.271 kb on - strandat 874.305 kb on + strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.423 kb on - strand, within ABZR87_RS04175at 874.423 kb on - strand, within ABZR87_RS04175at 874.637 kb on + strandat 874.637 kb on + strandat 874.638 kb on - strandat 874.638 kb on - strandat 874.638 kb on - strandat 874.871 kb on + strand, within ABZR87_RS04180at 874.937 kb on + strand, within ABZR87_RS04180at 874.938 kb on - strand, within ABZR87_RS04180

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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872,617 - +0.0
872,924 + ABZR87_RS04165 0.36 +0.8
872,924 + ABZR87_RS04165 0.36 +0.6
872,924 + ABZR87_RS04165 0.36 +0.3
872,925 - ABZR87_RS04165 0.36 +1.0
872,925 - ABZR87_RS04165 0.36 -0.0
872,925 - ABZR87_RS04165 0.36 +0.5
872,925 - ABZR87_RS04165 0.36 +1.8
872,925 - ABZR87_RS04165 0.36 -0.7
872,925 - ABZR87_RS04165 0.36 -0.2
873,191 + ABZR87_RS04165 0.63 +0.5
873,191 + ABZR87_RS04165 0.63 +0.4
873,192 - ABZR87_RS04165 0.64 -1.5
873,192 - ABZR87_RS04165 0.64 +1.0
873,192 - ABZR87_RS04165 0.64 +0.7
873,192 - ABZR87_RS04165 0.64 -0.8
873,263 + ABZR87_RS04165 0.71 -0.8
873,264 - ABZR87_RS04165 0.71 -0.3
873,422 + ABZR87_RS04165 0.87 +0.4
873,422 + ABZR87_RS04165 0.87 +0.1
873,423 - ABZR87_RS04165 0.87 -1.7
873,423 - ABZR87_RS04165 0.87 +0.4
873,532 - -0.1
873,532 - +1.3
873,532 - -0.8
873,717 - ABZR87_RS04170 0.34 -0.0
873,741 + ABZR87_RS04170 0.38 +0.4
873,741 + ABZR87_RS04170 0.38 -1.9
873,741 + ABZR87_RS04170 0.38 +1.0
873,742 - ABZR87_RS04170 0.38 -1.7
873,742 - ABZR87_RS04170 0.38 -0.5
873,744 + ABZR87_RS04170 0.39 +1.1
873,744 + ABZR87_RS04170 0.39 +0.8
873,745 - ABZR87_RS04170 0.39 -0.1
873,745 - ABZR87_RS04170 0.39 -0.6
873,849 + ABZR87_RS04170 0.58 -0.5
873,849 + ABZR87_RS04170 0.58 +0.9
873,849 + ABZR87_RS04170 0.58 +0.3
873,849 + ABZR87_RS04170 0.58 -2.0
873,850 - ABZR87_RS04170 0.58 -0.1
873,850 - ABZR87_RS04170 0.58 -0.6
873,850 - ABZR87_RS04170 0.58 +0.6
874,024 - ABZR87_RS04170 0.89 +0.5
874,024 - ABZR87_RS04170 0.89 -0.8
874,117 - +0.3
874,158 + -0.2
874,159 - +0.2
874,216 + -0.7
874,217 - +1.0
874,217 - -0.8
874,270 + +0.5
874,270 + +1.1
874,270 + -3.2
874,270 + +1.1
874,271 - +0.5
874,271 - +2.4
874,305 + ABZR87_RS04175 0.14 +0.2
874,306 - ABZR87_RS04175 0.15 +1.7
874,306 - ABZR87_RS04175 0.15 +0.4
874,306 - ABZR87_RS04175 0.15 +0.2
874,306 - ABZR87_RS04175 0.15 +0.5
874,306 - ABZR87_RS04175 0.15 +1.1
874,344 + ABZR87_RS04175 0.25 -0.9
874,344 + ABZR87_RS04175 0.25 +0.7
874,344 + ABZR87_RS04175 0.25 -0.4
874,344 + ABZR87_RS04175 0.25 -0.7
874,344 + ABZR87_RS04175 0.25 +0.1
874,344 + ABZR87_RS04175 0.25 +0.8
874,344 + ABZR87_RS04175 0.25 +1.3
874,344 + ABZR87_RS04175 0.25 +0.9
874,344 + ABZR87_RS04175 0.25 +0.2
874,345 - ABZR87_RS04175 0.25 +1.0
874,345 - ABZR87_RS04175 0.25 -0.9
874,345 - ABZR87_RS04175 0.25 +1.6
874,345 - ABZR87_RS04175 0.25 -0.1
874,345 - ABZR87_RS04175 0.25 -0.5
874,345 - ABZR87_RS04175 0.25 -0.2
874,345 - ABZR87_RS04175 0.25 -0.7
874,423 - ABZR87_RS04175 0.46 +0.1
874,423 - ABZR87_RS04175 0.46 -0.6
874,637 + +0.7
874,637 + +0.7
874,638 - +0.6
874,638 - -0.1
874,638 - +0.1
874,871 + ABZR87_RS04180 0.33 -1.9
874,937 + ABZR87_RS04180 0.42 +0.6
874,938 - ABZR87_RS04180 0.42 +0.5

Or see this region's nucleotide sequence