Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03590

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03585 and ABZR87_RS03590 are separated by 189 nucleotidesABZR87_RS03590 and ABZR87_RS03595 are separated by 160 nucleotidesABZR87_RS03595 and ABZR87_RS03600 are separated by 107 nucleotides ABZR87_RS03585: ABZR87_RS03585 - LysR family transcriptional regulator, at 753,518 to 754,435 _RS03585 ABZR87_RS03590: ABZR87_RS03590 - SDR family oxidoreductase, at 754,625 to 755,374 _RS03590 ABZR87_RS03595: ABZR87_RS03595 - hypothetical protein, at 755,535 to 755,786 _RS03595 ABZR87_RS03600: ABZR87_RS03600 - chaperonin GroEL, at 755,894 to 757,516 _RS03600 Position (kb) 754 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 753.702 kb on + strand, within ABZR87_RS03585at 753.703 kb on - strand, within ABZR87_RS03585at 753.858 kb on + strand, within ABZR87_RS03585at 753.858 kb on + strand, within ABZR87_RS03585at 753.858 kb on + strand, within ABZR87_RS03585at 753.858 kb on + strand, within ABZR87_RS03585at 753.858 kb on + strand, within ABZR87_RS03585at 753.858 kb on + strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.859 kb on - strand, within ABZR87_RS03585at 753.913 kb on - strand, within ABZR87_RS03585at 753.913 kb on - strand, within ABZR87_RS03585at 753.913 kb on - strand, within ABZR87_RS03585at 753.924 kb on + strand, within ABZR87_RS03585at 753.924 kb on + strand, within ABZR87_RS03585at 754.055 kb on + strand, within ABZR87_RS03585at 754.056 kb on - strand, within ABZR87_RS03585at 754.056 kb on - strand, within ABZR87_RS03585at 754.239 kb on + strand, within ABZR87_RS03585at 754.239 kb on + strand, within ABZR87_RS03585at 754.239 kb on + strand, within ABZR87_RS03585at 754.239 kb on + strand, within ABZR87_RS03585at 754.239 kb on + strand, within ABZR87_RS03585at 754.240 kb on - strand, within ABZR87_RS03585at 754.240 kb on - strand, within ABZR87_RS03585at 754.240 kb on - strand, within ABZR87_RS03585at 754.240 kb on - strand, within ABZR87_RS03585at 754.242 kb on + strand, within ABZR87_RS03585at 754.242 kb on + strand, within ABZR87_RS03585at 754.242 kb on + strand, within ABZR87_RS03585at 754.242 kb on + strand, within ABZR87_RS03585at 754.242 kb on + strand, within ABZR87_RS03585at 754.242 kb on + strand, within ABZR87_RS03585at 754.242 kb on + strand, within ABZR87_RS03585at 754.243 kb on - strand, within ABZR87_RS03585at 754.243 kb on - strand, within ABZR87_RS03585at 754.243 kb on - strand, within ABZR87_RS03585at 754.243 kb on - strand, within ABZR87_RS03585at 754.243 kb on - strand, within ABZR87_RS03585at 754.243 kb on - strand, within ABZR87_RS03585at 754.243 kb on - strand, within ABZR87_RS03585at 754.378 kb on + strandat 754.470 kb on + strandat 754.473 kb on + strandat 754.480 kb on - strandat 754.514 kb on + strandat 754.515 kb on - strandat 754.838 kb on + strand, within ABZR87_RS03590at 754.838 kb on + strand, within ABZR87_RS03590at 754.839 kb on - strand, within ABZR87_RS03590at 754.839 kb on - strand, within ABZR87_RS03590at 754.839 kb on - strand, within ABZR87_RS03590at 755.075 kb on + strand, within ABZR87_RS03590at 755.076 kb on - strand, within ABZR87_RS03590at 755.221 kb on - strand, within ABZR87_RS03590at 755.326 kb on + strandat 755.326 kb on + strandat 755.326 kb on + strandat 755.326 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.899 kb on - strandat 755.899 kb on - strandat 755.899 kb on - strandat 755.899 kb on - strandat 756.014 kb on - strandat 756.084 kb on + strand, within ABZR87_RS03600at 756.084 kb on + strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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753,702 + ABZR87_RS03585 0.20 +1.0
753,703 - ABZR87_RS03585 0.20 -0.3
753,858 + ABZR87_RS03585 0.37 -0.2
753,858 + ABZR87_RS03585 0.37 +0.8
753,858 + ABZR87_RS03585 0.37 +0.5
753,858 + ABZR87_RS03585 0.37 -0.3
753,858 + ABZR87_RS03585 0.37 -0.2
753,858 + ABZR87_RS03585 0.37 +0.7
753,859 - ABZR87_RS03585 0.37 -0.5
753,859 - ABZR87_RS03585 0.37 -0.6
753,859 - ABZR87_RS03585 0.37 +0.4
753,859 - ABZR87_RS03585 0.37 -0.1
753,859 - ABZR87_RS03585 0.37 -0.1
753,859 - ABZR87_RS03585 0.37 -0.1
753,859 - ABZR87_RS03585 0.37 -0.7
753,859 - ABZR87_RS03585 0.37 +0.2
753,859 - ABZR87_RS03585 0.37 -2.0
753,859 - ABZR87_RS03585 0.37 +0.7
753,859 - ABZR87_RS03585 0.37 -0.6
753,859 - ABZR87_RS03585 0.37 +0.4
753,859 - ABZR87_RS03585 0.37 +0.6
753,859 - ABZR87_RS03585 0.37 -0.1
753,913 - ABZR87_RS03585 0.43 +1.4
753,913 - ABZR87_RS03585 0.43 -0.1
753,913 - ABZR87_RS03585 0.43 -2.1
753,924 + ABZR87_RS03585 0.44 -1.5
753,924 + ABZR87_RS03585 0.44 -0.0
754,055 + ABZR87_RS03585 0.58 -0.4
754,056 - ABZR87_RS03585 0.59 +1.3
754,056 - ABZR87_RS03585 0.59 -0.4
754,239 + ABZR87_RS03585 0.79 -0.3
754,239 + ABZR87_RS03585 0.79 +0.1
754,239 + ABZR87_RS03585 0.79 -0.5
754,239 + ABZR87_RS03585 0.79 +1.1
754,239 + ABZR87_RS03585 0.79 -0.7
754,240 - ABZR87_RS03585 0.79 +0.0
754,240 - ABZR87_RS03585 0.79 -3.0
754,240 - ABZR87_RS03585 0.79 +0.1
754,240 - ABZR87_RS03585 0.79 +0.4
754,242 + ABZR87_RS03585 0.79 +0.0
754,242 + ABZR87_RS03585 0.79 +0.1
754,242 + ABZR87_RS03585 0.79 -0.2
754,242 + ABZR87_RS03585 0.79 +1.0
754,242 + ABZR87_RS03585 0.79 -0.0
754,242 + ABZR87_RS03585 0.79 -0.1
754,242 + ABZR87_RS03585 0.79 +0.2
754,243 - ABZR87_RS03585 0.79 +0.1
754,243 - ABZR87_RS03585 0.79 +0.8
754,243 - ABZR87_RS03585 0.79 +0.6
754,243 - ABZR87_RS03585 0.79 +1.0
754,243 - ABZR87_RS03585 0.79 +1.6
754,243 - ABZR87_RS03585 0.79 +0.5
754,243 - ABZR87_RS03585 0.79 -2.4
754,378 + +0.3
754,470 + +0.2
754,473 + -1.8
754,480 - -0.6
754,514 + -0.9
754,515 - +0.9
754,838 + ABZR87_RS03590 0.28 -0.6
754,838 + ABZR87_RS03590 0.28 -0.1
754,839 - ABZR87_RS03590 0.29 +0.9
754,839 - ABZR87_RS03590 0.29 +0.5
754,839 - ABZR87_RS03590 0.29 -0.6
755,075 + ABZR87_RS03590 0.60 -0.2
755,076 - ABZR87_RS03590 0.60 -1.0
755,221 - ABZR87_RS03590 0.79 +0.4
755,326 + -0.4
755,326 + -0.2
755,326 + +0.7
755,326 + -0.9
755,536 + -0.3
755,536 + +0.9
755,536 + -0.9
755,536 + -0.2
755,778 + +0.5
755,778 + -0.3
755,778 + +0.3
755,778 + -1.3
755,778 + +1.4
755,779 - -0.1
755,779 - +0.8
755,779 - -1.0
755,779 - +0.2
755,898 + +0.1
755,898 + -0.5
755,898 + -0.0
755,898 + +0.4
755,898 + -1.1
755,899 - -1.6
755,899 - -0.2
755,899 - -0.6
755,899 - +0.7
756,014 - +0.0
756,084 + ABZR87_RS03600 0.12 +0.4
756,084 + ABZR87_RS03600 0.12 +0.3
756,085 - ABZR87_RS03600 0.12 -0.1
756,085 - ABZR87_RS03600 0.12 +2.0
756,085 - ABZR87_RS03600 0.12 +0.3
756,085 - ABZR87_RS03600 0.12 +0.2
756,090 + ABZR87_RS03600 0.12 +1.4
756,090 + ABZR87_RS03600 0.12 -0.7
756,090 + ABZR87_RS03600 0.12 +1.8
756,090 + ABZR87_RS03600 0.12 -1.6
756,090 + ABZR87_RS03600 0.12 -0.3
756,090 + ABZR87_RS03600 0.12 +0.5
756,090 + ABZR87_RS03600 0.12 +0.3
756,090 + ABZR87_RS03600 0.12 +0.8
756,090 + ABZR87_RS03600 0.12 -2.6
756,090 + ABZR87_RS03600 0.12 +0.4
756,090 + ABZR87_RS03600 0.12 -0.7
756,090 + ABZR87_RS03600 0.12 +0.3
756,090 + ABZR87_RS03600 0.12 +0.4
756,090 + ABZR87_RS03600 0.12 +0.9
756,091 - ABZR87_RS03600 0.12 +0.2
756,091 - ABZR87_RS03600 0.12 +1.5
756,091 - ABZR87_RS03600 0.12 -0.5
756,091 - ABZR87_RS03600 0.12 +1.3
756,091 - ABZR87_RS03600 0.12 -1.0
756,091 - ABZR87_RS03600 0.12 -2.1
756,091 - ABZR87_RS03600 0.12 +0.3
756,091 - ABZR87_RS03600 0.12 +1.1
756,091 - ABZR87_RS03600 0.12 -0.3
756,091 - ABZR87_RS03600 0.12 -0.4

Or see this region's nucleotide sequence