Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03175

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03165 and ABZR87_RS03170 are separated by 41 nucleotidesABZR87_RS03170 and ABZR87_RS03175 are separated by 41 nucleotidesABZR87_RS03175 and ABZR87_RS03180 are separated by 335 nucleotidesABZR87_RS03180 and ABZR87_RS03185 are separated by 42 nucleotides ABZR87_RS03165: ABZR87_RS03165 - glutathione S-transferase, at 666,648 to 667,364 _RS03165 ABZR87_RS03170: ABZR87_RS03170 - hypothetical protein, at 667,406 to 667,795 _RS03170 ABZR87_RS03175: ABZR87_RS03175 - hypothetical protein, at 667,837 to 668,259 _RS03175 ABZR87_RS03180: ABZR87_RS03180 - hypothetical protein, at 668,595 to 668,822 _RS03180 ABZR87_RS03185: ABZR87_RS03185 - hypothetical protein, at 668,865 to 669,074 _RS03185 Position (kb) 667 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 666.870 kb on + strand, within ABZR87_RS03165at 666.870 kb on + strand, within ABZR87_RS03165at 666.870 kb on + strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 667.003 kb on - strand, within ABZR87_RS03165at 667.003 kb on - strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.215 kb on + strand, within ABZR87_RS03165at 667.284 kb on + strand, within ABZR87_RS03165at 667.424 kb on - strandat 667.451 kb on + strand, within ABZR87_RS03170at 667.451 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.629 kb on + strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.630 kb on - strand, within ABZR87_RS03170at 667.810 kb on + strandat 667.810 kb on + strandat 667.845 kb on + strandat 667.846 kb on - strandat 668.033 kb on + strand, within ABZR87_RS03175at 668.033 kb on + strand, within ABZR87_RS03175at 668.033 kb on + strand, within ABZR87_RS03175at 668.034 kb on - strand, within ABZR87_RS03175at 668.034 kb on - strand, within ABZR87_RS03175at 668.066 kb on + strand, within ABZR87_RS03175at 668.066 kb on + strand, within ABZR87_RS03175at 668.066 kb on + strand, within ABZR87_RS03175at 668.067 kb on - strand, within ABZR87_RS03175at 668.067 kb on - strand, within ABZR87_RS03175at 668.067 kb on - strand, within ABZR87_RS03175at 668.099 kb on + strand, within ABZR87_RS03175at 668.100 kb on - strand, within ABZR87_RS03175at 668.156 kb on + strand, within ABZR87_RS03175at 668.156 kb on + strand, within ABZR87_RS03175at 668.156 kb on + strand, within ABZR87_RS03175at 668.156 kb on + strand, within ABZR87_RS03175at 668.157 kb on - strand, within ABZR87_RS03175at 668.225 kb on + strandat 668.226 kb on - strandat 668.226 kb on - strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.246 kb on + strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.247 kb on - strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.364 kb on + strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.365 kb on - strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.415 kb on + strandat 668.416 kb on - strandat 668.416 kb on - strandat 668.426 kb on + strandat 668.426 kb on + strandat 668.480 kb on + strandat 668.480 kb on + strandat 668.481 kb on - strandat 668.518 kb on - strandat 668.583 kb on + strandat 668.596 kb on + strandat 668.596 kb on + strandat 668.596 kb on + strandat 668.596 kb on + strandat 668.597 kb on - strandat 668.597 kb on - strandat 668.597 kb on - strandat 668.674 kb on + strand, within ABZR87_RS03180at 668.675 kb on - strand, within ABZR87_RS03180at 668.675 kb on - strand, within ABZR87_RS03180at 668.815 kb on + strandat 668.815 kb on + strandat 668.866 kb on + strandat 668.866 kb on + strandat 668.867 kb on - strandat 668.867 kb on - strandat 668.924 kb on - strand, within ABZR87_RS03185at 669.020 kb on + strand, within ABZR87_RS03185at 669.021 kb on - strand, within ABZR87_RS03185at 669.021 kb on - strand, within ABZR87_RS03185at 669.024 kb on + strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185at 669.025 kb on - strand, within ABZR87_RS03185

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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666,870 + ABZR87_RS03165 0.31 -1.9
666,870 + ABZR87_RS03165 0.31 +0.8
666,870 + ABZR87_RS03165 0.31 -0.5
666,871 - ABZR87_RS03165 0.31 -0.0
666,871 - ABZR87_RS03165 0.31 +0.0
666,871 - ABZR87_RS03165 0.31 -1.8
666,871 - ABZR87_RS03165 0.31 +0.7
666,871 - ABZR87_RS03165 0.31 -0.5
667,003 - ABZR87_RS03165 0.50 +0.6
667,003 - ABZR87_RS03165 0.50 +1.2
667,005 + ABZR87_RS03165 0.50 +0.5
667,005 + ABZR87_RS03165 0.50 -0.4
667,005 + ABZR87_RS03165 0.50 +0.2
667,005 + ABZR87_RS03165 0.50 +0.3
667,006 - ABZR87_RS03165 0.50 +0.0
667,006 - ABZR87_RS03165 0.50 +1.3
667,006 - ABZR87_RS03165 0.50 -0.3
667,006 - ABZR87_RS03165 0.50 +0.1
667,080 + ABZR87_RS03165 0.60 -1.6
667,080 + ABZR87_RS03165 0.60 +0.0
667,080 + ABZR87_RS03165 0.60 -0.1
667,080 + ABZR87_RS03165 0.60 +0.5
667,080 + ABZR87_RS03165 0.60 +0.2
667,081 - ABZR87_RS03165 0.60 +0.6
667,081 - ABZR87_RS03165 0.60 +0.7
667,081 - ABZR87_RS03165 0.60 -0.5
667,081 - ABZR87_RS03165 0.60 +0.2
667,146 + ABZR87_RS03165 0.69 -0.2
667,146 + ABZR87_RS03165 0.69 -2.5
667,146 + ABZR87_RS03165 0.69 -0.1
667,146 + ABZR87_RS03165 0.69 +0.6
667,146 + ABZR87_RS03165 0.69 -0.4
667,146 + ABZR87_RS03165 0.69 -0.2
667,146 + ABZR87_RS03165 0.69 +0.8
667,146 + ABZR87_RS03165 0.69 -0.5
667,146 + ABZR87_RS03165 0.69 +0.7
667,146 + ABZR87_RS03165 0.69 -0.3
667,146 + ABZR87_RS03165 0.69 +2.5
667,146 + ABZR87_RS03165 0.69 +0.2
667,147 - ABZR87_RS03165 0.70 +0.1
667,147 - ABZR87_RS03165 0.70 +0.0
667,147 - ABZR87_RS03165 0.70 +0.2
667,147 - ABZR87_RS03165 0.70 +0.2
667,147 - ABZR87_RS03165 0.70 +0.1
667,147 - ABZR87_RS03165 0.70 +0.7
667,147 - ABZR87_RS03165 0.70 +0.8
667,147 - ABZR87_RS03165 0.70 +2.0
667,147 - ABZR87_RS03165 0.70 +0.5
667,215 + ABZR87_RS03165 0.79 -1.5
667,284 + ABZR87_RS03165 0.89 +0.8
667,424 - -1.5
667,451 + ABZR87_RS03170 0.12 +0.2
667,451 + ABZR87_RS03170 0.12 -1.2
667,629 + ABZR87_RS03170 0.57 -0.2
667,629 + ABZR87_RS03170 0.57 +0.2
667,629 + ABZR87_RS03170 0.57 -0.2
667,629 + ABZR87_RS03170 0.57 +0.0
667,629 + ABZR87_RS03170 0.57 +0.6
667,629 + ABZR87_RS03170 0.57 -1.0
667,629 + ABZR87_RS03170 0.57 -0.6
667,630 - ABZR87_RS03170 0.57 +0.3
667,630 - ABZR87_RS03170 0.57 -0.4
667,630 - ABZR87_RS03170 0.57 -0.5
667,630 - ABZR87_RS03170 0.57 +0.4
667,630 - ABZR87_RS03170 0.57 +0.7
667,630 - ABZR87_RS03170 0.57 +0.6
667,630 - ABZR87_RS03170 0.57 +0.8
667,810 + -0.4
667,810 + -2.8
667,845 + -0.0
667,846 - +0.7
668,033 + ABZR87_RS03175 0.46 +0.6
668,033 + ABZR87_RS03175 0.46 -1.3
668,033 + ABZR87_RS03175 0.46 -1.8
668,034 - ABZR87_RS03175 0.47 +1.1
668,034 - ABZR87_RS03175 0.47 +1.0
668,066 + ABZR87_RS03175 0.54 +1.8
668,066 + ABZR87_RS03175 0.54 +0.1
668,066 + ABZR87_RS03175 0.54 -0.4
668,067 - ABZR87_RS03175 0.54 +1.0
668,067 - ABZR87_RS03175 0.54 -0.0
668,067 - ABZR87_RS03175 0.54 +0.7
668,099 + ABZR87_RS03175 0.62 -1.0
668,100 - ABZR87_RS03175 0.62 +0.2
668,156 + ABZR87_RS03175 0.75 +1.1
668,156 + ABZR87_RS03175 0.75 +0.1
668,156 + ABZR87_RS03175 0.75 +1.4
668,156 + ABZR87_RS03175 0.75 -0.0
668,157 - ABZR87_RS03175 0.76 +0.9
668,225 + -2.3
668,226 - +0.1
668,226 - +0.3
668,246 + -0.4
668,246 + +1.2
668,246 + +0.9
668,246 + -0.0
668,246 + +0.9
668,246 + -1.4
668,246 + -1.5
668,247 - +0.1
668,247 - +1.0
668,247 - -1.1
668,247 - +1.7
668,247 - +0.7
668,247 - -0.8
668,364 + -3.0
668,364 + -0.6
668,364 + +0.4
668,364 + +0.6
668,364 + -1.3
668,365 - -0.8
668,365 - +0.0
668,365 - +0.8
668,365 - +0.7
668,365 - +1.4
668,365 - +0.4
668,365 - -0.3
668,365 - +1.0
668,365 - +1.0
668,415 + +0.7
668,415 + +0.3
668,415 + -0.3
668,415 + -0.7
668,415 + +0.7
668,415 + -0.3
668,416 - +1.2
668,416 - -0.6
668,426 + +2.5
668,426 + +2.0
668,480 + -0.9
668,480 + +0.1
668,481 - -0.6
668,518 - +1.2
668,583 + -0.5
668,596 + +0.1
668,596 + +0.6
668,596 + -0.4
668,596 + -2.2
668,597 - +0.0
668,597 - -1.9
668,597 - +0.5
668,674 + ABZR87_RS03180 0.35 -0.6
668,675 - ABZR87_RS03180 0.35 -0.9
668,675 - ABZR87_RS03180 0.35 -2.0
668,815 + -0.0
668,815 + +0.7
668,866 + +0.1
668,866 + +0.3
668,867 - +2.0
668,867 - +0.5
668,924 - ABZR87_RS03185 0.28 +0.8
669,020 + ABZR87_RS03185 0.74 +0.0
669,021 - ABZR87_RS03185 0.74 +0.7
669,021 - ABZR87_RS03185 0.74 +0.0
669,024 + ABZR87_RS03185 0.76 +0.5
669,025 - ABZR87_RS03185 0.76 +0.7
669,025 - ABZR87_RS03185 0.76 -0.0
669,025 - ABZR87_RS03185 0.76 +0.0
669,025 - ABZR87_RS03185 0.76 +0.8
669,025 - ABZR87_RS03185 0.76 +0.2

Or see this region's nucleotide sequence