Experiment: nitrogen source nitrite 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01655 and ABZR87_RS01660 overlap by 4 nucleotides ABZR87_RS01660 and ABZR87_RS01665 are separated by 96 nucleotides
ABZR87_RS01655: ABZR87_RS01655 - acetyl-CoA carboxylase biotin carboxylase subunit, at 346,442 to 347,809
_RS01655
ABZR87_RS01660: ABZR87_RS01660 - 50S ribosomal protein L11 methyltransferase, at 347,806 to 348,702
_RS01660
ABZR87_RS01665: ABZR87_RS01665 - DUF3426 domain-containing protein, at 348,799 to 350,250
_RS01665
Position (kb) 347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 348.079 kb on + strand, within ABZR87_RS01660 at 348.079 kb on + strand, within ABZR87_RS01660 at 348.079 kb on + strand, within ABZR87_RS01660 at 348.079 kb on + strand, within ABZR87_RS01660 at 348.080 kb on - strand, within ABZR87_RS01660 at 348.147 kb on + strand, within ABZR87_RS01660 at 348.147 kb on + strand, within ABZR87_RS01660 at 348.147 kb on + strand, within ABZR87_RS01660 at 348.148 kb on - strand, within ABZR87_RS01660 at 348.148 kb on - strand, within ABZR87_RS01660 at 348.319 kb on + strand, within ABZR87_RS01660 at 348.422 kb on - strand, within ABZR87_RS01660 at 348.422 kb on - strand, within ABZR87_RS01660 at 348.625 kb on + strand at 348.625 kb on + strand at 348.626 kb on - strand at 348.701 kb on - strand at 348.764 kb on + strand at 348.764 kb on + strand at 348.765 kb on - strand at 348.959 kb on + strand, within ABZR87_RS01665 at 348.959 kb on + strand, within ABZR87_RS01665 at 348.960 kb on - strand, within ABZR87_RS01665 at 348.960 kb on - strand, within ABZR87_RS01665 at 348.960 kb on - strand, within ABZR87_RS01665 at 349.253 kb on + strand, within ABZR87_RS01665 at 349.254 kb on - strand, within ABZR87_RS01665 at 349.254 kb on - strand, within ABZR87_RS01665 at 349.271 kb on + strand, within ABZR87_RS01665 at 349.272 kb on - strand, within ABZR87_RS01665 at 349.400 kb on + strand, within ABZR87_RS01665 at 349.517 kb on + strand, within ABZR87_RS01665 at 349.517 kb on + strand, within ABZR87_RS01665 at 349.518 kb on - strand, within ABZR87_RS01665 at 349.569 kb on + strand, within ABZR87_RS01665 at 349.569 kb on + strand, within ABZR87_RS01665
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM remove 348,079 + ABZR87_RS01660 0.30 +0.2 348,079 + ABZR87_RS01660 0.30 -1.5 348,079 + ABZR87_RS01660 0.30 -0.7 348,079 + ABZR87_RS01660 0.30 -0.1 348,080 - ABZR87_RS01660 0.31 +0.7 348,147 + ABZR87_RS01660 0.38 +2.5 348,147 + ABZR87_RS01660 0.38 +2.6 348,147 + ABZR87_RS01660 0.38 +0.4 348,148 - ABZR87_RS01660 0.38 +1.7 348,148 - ABZR87_RS01660 0.38 -0.3 348,319 + ABZR87_RS01660 0.57 +0.3 348,422 - ABZR87_RS01660 0.69 -0.5 348,422 - ABZR87_RS01660 0.69 +0.7 348,625 + +0.2 348,625 + +0.2 348,626 - -0.4 348,701 - +0.1 348,764 + -1.6 348,764 + +1.3 348,765 - +3.2 348,959 + ABZR87_RS01665 0.11 -3.1 348,959 + ABZR87_RS01665 0.11 -0.9 348,960 - ABZR87_RS01665 0.11 -1.0 348,960 - ABZR87_RS01665 0.11 +0.8 348,960 - ABZR87_RS01665 0.11 -1.1 349,253 + ABZR87_RS01665 0.31 -0.2 349,254 - ABZR87_RS01665 0.31 +0.5 349,254 - ABZR87_RS01665 0.31 +0.2 349,271 + ABZR87_RS01665 0.33 -0.5 349,272 - ABZR87_RS01665 0.33 +1.0 349,400 + ABZR87_RS01665 0.41 -0.7 349,517 + ABZR87_RS01665 0.49 +0.3 349,517 + ABZR87_RS01665 0.49 -0.1 349,518 - ABZR87_RS01665 0.50 -0.2 349,569 + ABZR87_RS01665 0.53 +0.2 349,569 + ABZR87_RS01665 0.53 -0.6
Or see this region's nucleotide sequence