Experiment: nitrogen source nitrite 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01500 and ABZR87_RS01505 are separated by 49 nucleotides ABZR87_RS01505 and ABZR87_RS01510 are separated by 82 nucleotides ABZR87_RS01510 and ABZR87_RS01515 are separated by 56 nucleotides
ABZR87_RS01500: ABZR87_RS01500 - glyoxalase/bleomycin resistance/extradiol dioxygenase family protein, at 315,893 to 316,312
_RS01500
ABZR87_RS01505: ABZR87_RS01505 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 316,362 to 317,111
_RS01505
ABZR87_RS01510: ABZR87_RS01510 - YidB family protein, at 317,194 to 317,793
_RS01510
ABZR87_RS01515: ABZR87_RS01515 - LysR family transcriptional regulator, at 317,850 to 318,794
_RS01515
Position (kb) 317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 316.274 kb on + strand at 316.360 kb on + strand at 316.361 kb on - strand at 316.669 kb on + strand, within ABZR87_RS01505 at 316.669 kb on + strand, within ABZR87_RS01505 at 316.669 kb on + strand, within ABZR87_RS01505 at 316.669 kb on + strand, within ABZR87_RS01505 at 316.669 kb on + strand, within ABZR87_RS01505 at 316.670 kb on - strand, within ABZR87_RS01505 at 317.020 kb on + strand, within ABZR87_RS01505 at 317.020 kb on + strand, within ABZR87_RS01505 at 317.021 kb on - strand, within ABZR87_RS01505 at 317.042 kb on + strand at 317.043 kb on - strand at 317.043 kb on - strand at 317.109 kb on + strand at 317.110 kb on - strand at 317.201 kb on + strand at 317.202 kb on - strand at 317.202 kb on - strand at 317.202 kb on - strand at 317.299 kb on + strand, within ABZR87_RS01510 at 317.300 kb on - strand, within ABZR87_RS01510 at 317.300 kb on - strand, within ABZR87_RS01510 at 317.863 kb on + strand at 317.864 kb on - strand at 317.898 kb on + strand at 317.898 kb on + strand at 317.898 kb on + strand at 317.899 kb on - strand at 317.899 kb on - strand at 317.899 kb on - strand at 317.899 kb on - strand at 317.899 kb on - strand at 317.899 kb on - strand at 318.002 kb on - strand, within ABZR87_RS01515 at 318.010 kb on + strand, within ABZR87_RS01515 at 318.011 kb on - strand, within ABZR87_RS01515 at 318.011 kb on - strand, within ABZR87_RS01515 at 318.013 kb on + strand, within ABZR87_RS01515 at 318.013 kb on + strand, within ABZR87_RS01515 at 318.014 kb on - strand, within ABZR87_RS01515 at 318.014 kb on - strand, within ABZR87_RS01515 at 318.014 kb on - strand, within ABZR87_RS01515 at 318.287 kb on - strand, within ABZR87_RS01515 at 318.584 kb on - strand, within ABZR87_RS01515 at 318.584 kb on - strand, within ABZR87_RS01515 at 318.775 kb on + strand at 318.775 kb on + strand at 318.775 kb on + strand at 318.776 kb on - strand at 318.776 kb on - strand at 318.776 kb on - strand at 318.776 kb on - strand at 318.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM remove 316,274 + +0.8 316,360 + -0.2 316,361 - +0.2 316,669 + ABZR87_RS01505 0.41 -0.7 316,669 + ABZR87_RS01505 0.41 +0.0 316,669 + ABZR87_RS01505 0.41 +0.4 316,669 + ABZR87_RS01505 0.41 -1.7 316,669 + ABZR87_RS01505 0.41 +1.3 316,670 - ABZR87_RS01505 0.41 +0.6 317,020 + ABZR87_RS01505 0.88 -0.0 317,020 + ABZR87_RS01505 0.88 -0.7 317,021 - ABZR87_RS01505 0.88 +0.3 317,042 + -1.9 317,043 - +0.7 317,043 - -1.7 317,109 + -2.8 317,110 - +1.4 317,201 + -0.2 317,202 - -0.2 317,202 - +0.8 317,202 - +0.3 317,299 + ABZR87_RS01510 0.17 +2.2 317,300 - ABZR87_RS01510 0.18 +0.2 317,300 - ABZR87_RS01510 0.18 +0.2 317,863 + +0.1 317,864 - -0.4 317,898 + -0.3 317,898 + +1.0 317,898 + -0.3 317,899 - -2.7 317,899 - -0.7 317,899 - +0.6 317,899 - +0.9 317,899 - +0.2 317,899 - +0.2 318,002 - ABZR87_RS01515 0.16 -0.2 318,010 + ABZR87_RS01515 0.17 +1.0 318,011 - ABZR87_RS01515 0.17 +1.5 318,011 - ABZR87_RS01515 0.17 +1.5 318,013 + ABZR87_RS01515 0.17 -0.2 318,013 + ABZR87_RS01515 0.17 +0.2 318,014 - ABZR87_RS01515 0.17 -1.5 318,014 - ABZR87_RS01515 0.17 -0.6 318,014 - ABZR87_RS01515 0.17 -0.6 318,287 - ABZR87_RS01515 0.46 -0.3 318,584 - ABZR87_RS01515 0.78 -0.2 318,584 - ABZR87_RS01515 0.78 +0.2 318,775 + +0.6 318,775 + -1.3 318,775 + +0.5 318,776 - -1.1 318,776 - +0.1 318,776 - +3.7 318,776 - +0.2 318,776 - -0.5
Or see this region's nucleotide sequence