Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00585

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00575 and ABZR87_RS00580 are separated by 28 nucleotidesABZR87_RS00580 and ABZR87_RS00585 are separated by 233 nucleotidesABZR87_RS00585 and ABZR87_RS00590 are separated by 74 nucleotidesABZR87_RS00590 and ABZR87_RS00595 are separated by 6 nucleotides ABZR87_RS00575: ABZR87_RS00575 - HipA N-terminal domain-containing protein, at 118,449 to 119,759 _RS00575 ABZR87_RS00580: ABZR87_RS00580 - hypothetical protein, at 119,788 to 120,063 _RS00580 ABZR87_RS00585: ABZR87_RS00585 - M20 family metallopeptidase, at 120,297 to 121,709 _RS00585 ABZR87_RS00590: ABZR87_RS00590 - transporter substrate-binding domain-containing protein, at 121,784 to 122,617 _RS00590 ABZR87_RS00595: ABZR87_RS00595 - Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter, at 122,624 to 123,805 _RS00595 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 119.457 kb on + strand, within ABZR87_RS00575at 119.508 kb on + strand, within ABZR87_RS00575at 119.508 kb on + strand, within ABZR87_RS00575at 119.509 kb on - strand, within ABZR87_RS00575at 119.509 kb on - strand, within ABZR87_RS00575at 119.559 kb on + strand, within ABZR87_RS00575at 119.560 kb on - strand, within ABZR87_RS00575at 119.699 kb on + strandat 119.700 kb on - strandat 119.789 kb on + strandat 119.789 kb on + strandat 119.789 kb on + strandat 119.789 kb on + strandat 119.789 kb on + strandat 119.790 kb on - strandat 119.790 kb on - strandat 119.790 kb on - strandat 119.826 kb on - strand, within ABZR87_RS00580at 119.826 kb on - strand, within ABZR87_RS00580at 119.925 kb on - strand, within ABZR87_RS00580at 119.925 kb on - strand, within ABZR87_RS00580at 119.925 kb on - strand, within ABZR87_RS00580at 120.034 kb on + strand, within ABZR87_RS00580at 120.040 kb on + strandat 120.040 kb on + strandat 120.040 kb on + strandat 120.041 kb on - strandat 120.041 kb on - strandat 120.041 kb on - strandat 120.041 kb on - strandat 120.112 kb on - strandat 120.112 kb on - strandat 120.112 kb on - strandat 120.112 kb on - strandat 120.123 kb on + strandat 120.326 kb on + strandat 120.326 kb on + strandat 120.326 kb on + strandat 120.326 kb on + strandat 120.327 kb on - strandat 120.327 kb on - strandat 120.327 kb on - strandat 120.492 kb on + strand, within ABZR87_RS00585at 120.492 kb on + strand, within ABZR87_RS00585at 120.492 kb on + strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.513 kb on + strand, within ABZR87_RS00585at 120.513 kb on + strand, within ABZR87_RS00585at 120.513 kb on + strand, within ABZR87_RS00585at 120.513 kb on + strand, within ABZR87_RS00585at 120.514 kb on - strand, within ABZR87_RS00585at 120.514 kb on - strand, within ABZR87_RS00585at 120.645 kb on + strand, within ABZR87_RS00585at 120.646 kb on - strand, within ABZR87_RS00585at 120.726 kb on + strand, within ABZR87_RS00585at 120.779 kb on + strand, within ABZR87_RS00585at 120.779 kb on + strand, within ABZR87_RS00585at 120.779 kb on + strand, within ABZR87_RS00585at 120.780 kb on - strand, within ABZR87_RS00585at 120.780 kb on - strand, within ABZR87_RS00585at 120.780 kb on - strand, within ABZR87_RS00585at 120.780 kb on - strand, within ABZR87_RS00585at 120.957 kb on + strand, within ABZR87_RS00585at 120.957 kb on + strand, within ABZR87_RS00585at 120.958 kb on - strand, within ABZR87_RS00585at 120.958 kb on - strand, within ABZR87_RS00585at 120.958 kb on - strand, within ABZR87_RS00585at 120.990 kb on + strand, within ABZR87_RS00585at 120.991 kb on - strand, within ABZR87_RS00585at 121.050 kb on - strand, within ABZR87_RS00585at 121.050 kb on - strand, within ABZR87_RS00585at 121.263 kb on + strand, within ABZR87_RS00585at 121.263 kb on + strand, within ABZR87_RS00585at 121.264 kb on - strand, within ABZR87_RS00585at 121.264 kb on - strand, within ABZR87_RS00585at 121.450 kb on + strand, within ABZR87_RS00585at 121.467 kb on - strand, within ABZR87_RS00585at 121.707 kb on + strandat 121.708 kb on - strandat 121.949 kb on + strand, within ABZR87_RS00590at 121.949 kb on + strand, within ABZR87_RS00590at 121.949 kb on + strand, within ABZR87_RS00590at 121.949 kb on + strand, within ABZR87_RS00590at 121.949 kb on + strand, within ABZR87_RS00590at 121.950 kb on - strand, within ABZR87_RS00590at 121.950 kb on - strand, within ABZR87_RS00590at 121.950 kb on - strand, within ABZR87_RS00590at 121.950 kb on - strand, within ABZR87_RS00590at 121.960 kb on + strand, within ABZR87_RS00590at 121.960 kb on + strand, within ABZR87_RS00590at 121.960 kb on + strand, within ABZR87_RS00590at 121.961 kb on - strand, within ABZR87_RS00590at 121.961 kb on - strand, within ABZR87_RS00590at 121.961 kb on - strand, within ABZR87_RS00590at 121.964 kb on + strand, within ABZR87_RS00590at 121.964 kb on + strand, within ABZR87_RS00590at 121.964 kb on + strand, within ABZR87_RS00590at 121.965 kb on - strand, within ABZR87_RS00590at 121.965 kb on - strand, within ABZR87_RS00590at 122.102 kb on + strand, within ABZR87_RS00590at 122.102 kb on + strand, within ABZR87_RS00590at 122.159 kb on + strand, within ABZR87_RS00590at 122.160 kb on - strand, within ABZR87_RS00590at 122.171 kb on + strand, within ABZR87_RS00590at 122.172 kb on - strand, within ABZR87_RS00590at 122.172 kb on - strand, within ABZR87_RS00590at 122.172 kb on - strand, within ABZR87_RS00590at 122.222 kb on + strand, within ABZR87_RS00590at 122.223 kb on - strand, within ABZR87_RS00590at 122.333 kb on + strand, within ABZR87_RS00590at 122.486 kb on + strand, within ABZR87_RS00590at 122.486 kb on + strand, within ABZR87_RS00590at 122.486 kb on + strand, within ABZR87_RS00590at 122.487 kb on - strand, within ABZR87_RS00590at 122.487 kb on - strand, within ABZR87_RS00590at 122.487 kb on - strand, within ABZR87_RS00590at 122.592 kb on - strandat 122.615 kb on + strandat 122.615 kb on + strandat 122.615 kb on + strandat 122.615 kb on + strandat 122.616 kb on - strandat 122.616 kb on - strandat 122.616 kb on - strandat 122.625 kb on + strandat 122.625 kb on + strandat 122.625 kb on + strandat 122.625 kb on + strandat 122.625 kb on + strandat 122.625 kb on + strandat 122.626 kb on - strandat 122.626 kb on - strandat 122.626 kb on - strandat 122.626 kb on - strandat 122.626 kb on - strandat 122.626 kb on - strandat 122.669 kb on + strandat 122.669 kb on + strandat 122.669 kb on + strandat 122.670 kb on - strandat 122.670 kb on - strandat 122.670 kb on - strandat 122.670 kb on - strandat 122.675 kb on + strandat 122.675 kb on + strandat 122.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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119,457 + ABZR87_RS00575 0.77 -0.1
119,508 + ABZR87_RS00575 0.81 -0.0
119,508 + ABZR87_RS00575 0.81 +0.2
119,509 - ABZR87_RS00575 0.81 +0.9
119,509 - ABZR87_RS00575 0.81 -0.1
119,559 + ABZR87_RS00575 0.85 +0.7
119,560 - ABZR87_RS00575 0.85 -0.5
119,699 + +0.6
119,700 - +0.2
119,789 + +0.9
119,789 + +0.3
119,789 + +1.3
119,789 + -1.8
119,789 + +0.3
119,790 - +0.1
119,790 - -1.0
119,790 - -0.5
119,826 - ABZR87_RS00580 0.14 -0.2
119,826 - ABZR87_RS00580 0.14 +0.2
119,925 - ABZR87_RS00580 0.50 +0.5
119,925 - ABZR87_RS00580 0.50 -0.2
119,925 - ABZR87_RS00580 0.50 -1.3
120,034 + ABZR87_RS00580 0.89 -1.3
120,040 + -0.3
120,040 + +0.1
120,040 + -2.6
120,041 - -0.5
120,041 - +0.8
120,041 - -2.0
120,041 - -0.3
120,112 - +0.6
120,112 - +0.4
120,112 - +0.8
120,112 - +0.3
120,123 + +0.4
120,326 + +0.6
120,326 + +0.1
120,326 + +1.9
120,326 + -0.6
120,327 - +1.1
120,327 - +1.0
120,327 - +1.9
120,492 + ABZR87_RS00585 0.14 -1.2
120,492 + ABZR87_RS00585 0.14 +0.1
120,492 + ABZR87_RS00585 0.14 +1.0
120,493 - ABZR87_RS00585 0.14 -0.1
120,493 - ABZR87_RS00585 0.14 +0.8
120,493 - ABZR87_RS00585 0.14 +1.4
120,493 - ABZR87_RS00585 0.14 +0.2
120,493 - ABZR87_RS00585 0.14 +1.3
120,513 + ABZR87_RS00585 0.15 -0.0
120,513 + ABZR87_RS00585 0.15 +1.3
120,513 + ABZR87_RS00585 0.15 +1.0
120,513 + ABZR87_RS00585 0.15 +0.3
120,514 - ABZR87_RS00585 0.15 +0.7
120,514 - ABZR87_RS00585 0.15 +0.2
120,645 + ABZR87_RS00585 0.25 +0.1
120,646 - ABZR87_RS00585 0.25 -0.3
120,726 + ABZR87_RS00585 0.30 +0.3
120,779 + ABZR87_RS00585 0.34 +0.3
120,779 + ABZR87_RS00585 0.34 -2.9
120,779 + ABZR87_RS00585 0.34 -0.9
120,780 - ABZR87_RS00585 0.34 +0.9
120,780 - ABZR87_RS00585 0.34 -0.4
120,780 - ABZR87_RS00585 0.34 +0.8
120,780 - ABZR87_RS00585 0.34 -0.1
120,957 + ABZR87_RS00585 0.47 +0.6
120,957 + ABZR87_RS00585 0.47 +1.7
120,958 - ABZR87_RS00585 0.47 -0.6
120,958 - ABZR87_RS00585 0.47 +3.1
120,958 - ABZR87_RS00585 0.47 +0.3
120,990 + ABZR87_RS00585 0.49 +1.9
120,991 - ABZR87_RS00585 0.49 +0.9
121,050 - ABZR87_RS00585 0.53 +0.1
121,050 - ABZR87_RS00585 0.53 +0.2
121,263 + ABZR87_RS00585 0.68 -2.2
121,263 + ABZR87_RS00585 0.68 +1.0
121,264 - ABZR87_RS00585 0.68 +1.1
121,264 - ABZR87_RS00585 0.68 +1.2
121,450 + ABZR87_RS00585 0.82 -1.9
121,467 - ABZR87_RS00585 0.83 -0.5
121,707 + +0.7
121,708 - -0.4
121,949 + ABZR87_RS00590 0.20 +0.4
121,949 + ABZR87_RS00590 0.20 -1.5
121,949 + ABZR87_RS00590 0.20 +0.3
121,949 + ABZR87_RS00590 0.20 +0.3
121,949 + ABZR87_RS00590 0.20 +0.7
121,950 - ABZR87_RS00590 0.20 -0.2
121,950 - ABZR87_RS00590 0.20 +1.8
121,950 - ABZR87_RS00590 0.20 +0.8
121,950 - ABZR87_RS00590 0.20 +0.5
121,960 + ABZR87_RS00590 0.21 -1.4
121,960 + ABZR87_RS00590 0.21 +0.2
121,960 + ABZR87_RS00590 0.21 -0.9
121,961 - ABZR87_RS00590 0.21 +0.1
121,961 - ABZR87_RS00590 0.21 +0.8
121,961 - ABZR87_RS00590 0.21 +0.6
121,964 + ABZR87_RS00590 0.22 +2.0
121,964 + ABZR87_RS00590 0.22 +0.9
121,964 + ABZR87_RS00590 0.22 +0.2
121,965 - ABZR87_RS00590 0.22 -0.5
121,965 - ABZR87_RS00590 0.22 -1.4
122,102 + ABZR87_RS00590 0.38 -0.0
122,102 + ABZR87_RS00590 0.38 -0.5
122,159 + ABZR87_RS00590 0.45 +2.1
122,160 - ABZR87_RS00590 0.45 +0.5
122,171 + ABZR87_RS00590 0.46 +0.2
122,172 - ABZR87_RS00590 0.47 +1.1
122,172 - ABZR87_RS00590 0.47 -1.9
122,172 - ABZR87_RS00590 0.47 +0.9
122,222 + ABZR87_RS00590 0.53 -0.5
122,223 - ABZR87_RS00590 0.53 +1.3
122,333 + ABZR87_RS00590 0.66 +0.6
122,486 + ABZR87_RS00590 0.84 +1.1
122,486 + ABZR87_RS00590 0.84 -0.1
122,486 + ABZR87_RS00590 0.84 -0.4
122,487 - ABZR87_RS00590 0.84 -0.2
122,487 - ABZR87_RS00590 0.84 -0.1
122,487 - ABZR87_RS00590 0.84 +0.4
122,592 - -0.7
122,615 + -1.4
122,615 + +0.2
122,615 + -0.6
122,615 + -0.8
122,616 - +0.1
122,616 - +0.1
122,616 - -0.7
122,625 + -1.2
122,625 + +2.1
122,625 + +0.0
122,625 + +0.1
122,625 + -0.2
122,625 + -0.5
122,626 - +1.4
122,626 - -1.6
122,626 - +1.1
122,626 - -2.8
122,626 - +0.4
122,626 - -3.5
122,669 + +0.7
122,669 + -1.6
122,669 + +1.3
122,670 - +0.7
122,670 - +0.4
122,670 - +0.0
122,670 - -0.3
122,675 + +0.3
122,675 + -0.5
122,676 - +0.4

Or see this region's nucleotide sequence