Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS17145

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS17140 and RALBFv3_RS17145 are separated by 60 nucleotidesRALBFv3_RS17145 and RALBFv3_RS17150 are separated by 60 nucleotidesRALBFv3_RS17150 and RALBFv3_RS17155 are separated by 185 nucleotides RALBFv3_RS17140: RALBFv3_RS17140 - NAD(P)-dependent alcohol dehydrogenase, at 334,815 to 335,879 _RS17140 RALBFv3_RS17145: RALBFv3_RS17145 - aldo/keto reductase, at 335,940 to 336,944 _RS17145 RALBFv3_RS17150: RALBFv3_RS17150 - carboxymuconolactone decarboxylase family protein, at 337,005 to 337,331 _RS17150 RALBFv3_RS17155: RALBFv3_RS17155 - LysR family transcriptional regulator, at 337,517 to 338,410 _RS17155 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 335.119 kb on + strand, within RALBFv3_RS17140at 335.119 kb on + strand, within RALBFv3_RS17140at 335.119 kb on + strand, within RALBFv3_RS17140at 335.119 kb on + strand, within RALBFv3_RS17140at 335.120 kb on - strand, within RALBFv3_RS17140at 335.120 kb on - strand, within RALBFv3_RS17140at 335.389 kb on + strand, within RALBFv3_RS17140at 335.390 kb on - strand, within RALBFv3_RS17140at 335.390 kb on - strand, within RALBFv3_RS17140at 335.536 kb on + strand, within RALBFv3_RS17140at 335.537 kb on - strand, within RALBFv3_RS17140at 335.537 kb on - strand, within RALBFv3_RS17140at 335.713 kb on + strand, within RALBFv3_RS17140at 335.714 kb on - strand, within RALBFv3_RS17140at 335.714 kb on - strand, within RALBFv3_RS17140at 335.714 kb on - strand, within RALBFv3_RS17140at 335.773 kb on + strandat 335.773 kb on + strandat 335.774 kb on - strandat 335.827 kb on + strandat 335.828 kb on - strandat 335.982 kb on - strandat 336.073 kb on + strand, within RALBFv3_RS17145at 336.074 kb on - strand, within RALBFv3_RS17145at 336.074 kb on - strand, within RALBFv3_RS17145at 336.074 kb on - strand, within RALBFv3_RS17145at 336.300 kb on + strand, within RALBFv3_RS17145at 336.301 kb on + strand, within RALBFv3_RS17145at 336.302 kb on - strand, within RALBFv3_RS17145at 336.337 kb on + strand, within RALBFv3_RS17145at 336.337 kb on + strand, within RALBFv3_RS17145at 336.338 kb on - strand, within RALBFv3_RS17145at 336.358 kb on + strand, within RALBFv3_RS17145at 336.358 kb on + strand, within RALBFv3_RS17145at 336.359 kb on - strand, within RALBFv3_RS17145at 336.413 kb on - strand, within RALBFv3_RS17145at 336.413 kb on - strand, within RALBFv3_RS17145at 336.511 kb on + strand, within RALBFv3_RS17145at 336.512 kb on - strand, within RALBFv3_RS17145at 336.595 kb on + strand, within RALBFv3_RS17145at 336.595 kb on + strand, within RALBFv3_RS17145at 336.595 kb on + strand, within RALBFv3_RS17145at 336.595 kb on + strand, within RALBFv3_RS17145at 336.596 kb on - strand, within RALBFv3_RS17145at 336.596 kb on - strand, within RALBFv3_RS17145at 336.596 kb on - strand, within RALBFv3_RS17145at 336.610 kb on + strand, within RALBFv3_RS17145at 336.611 kb on - strand, within RALBFv3_RS17145at 336.611 kb on - strand, within RALBFv3_RS17145at 336.611 kb on - strand, within RALBFv3_RS17145at 336.788 kb on - strand, within RALBFv3_RS17145at 336.788 kb on - strand, within RALBFv3_RS17145at 336.788 kb on - strand, within RALBFv3_RS17145at 336.931 kb on + strandat 336.931 kb on + strandat 337.075 kb on + strand, within RALBFv3_RS17150at 337.075 kb on + strand, within RALBFv3_RS17150at 337.171 kb on + strand, within RALBFv3_RS17150at 337.172 kb on - strand, within RALBFv3_RS17150at 337.266 kb on - strand, within RALBFv3_RS17150at 337.267 kb on + strand, within RALBFv3_RS17150at 337.410 kb on - strandat 337.410 kb on - strandat 337.410 kb on - strandat 337.431 kb on - strandat 337.440 kb on + strandat 337.455 kb on + strandat 337.456 kb on - strandat 337.456 kb on - strandat 337.584 kb on + strandat 337.585 kb on - strandat 337.587 kb on + strandat 337.664 kb on + strand, within RALBFv3_RS17155at 337.664 kb on + strand, within RALBFv3_RS17155at 337.665 kb on - strand, within RALBFv3_RS17155at 337.683 kb on + strand, within RALBFv3_RS17155at 337.683 kb on + strand, within RALBFv3_RS17155at 337.683 kb on + strand, within RALBFv3_RS17155at 337.683 kb on + strand, within RALBFv3_RS17155at 337.684 kb on - strandat 337.684 kb on - strand, within RALBFv3_RS17155at 337.684 kb on - strand, within RALBFv3_RS17155at 337.725 kb on + strand, within RALBFv3_RS17155at 337.725 kb on + strand, within RALBFv3_RS17155at 337.726 kb on - strand, within RALBFv3_RS17155at 337.800 kb on + strand, within RALBFv3_RS17155at 337.800 kb on + strand, within RALBFv3_RS17155at 337.800 kb on + strand, within RALBFv3_RS17155at 337.801 kb on - strand, within RALBFv3_RS17155at 337.801 kb on - strand, within RALBFv3_RS17155at 337.890 kb on + strand, within RALBFv3_RS17155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
remove
335,119 + RALBFv3_RS17140 0.29 -0.1
335,119 + RALBFv3_RS17140 0.29 +0.8
335,119 + RALBFv3_RS17140 0.29 -0.7
335,119 + RALBFv3_RS17140 0.29 +0.1
335,120 - RALBFv3_RS17140 0.29 -2.4
335,120 - RALBFv3_RS17140 0.29 +0.1
335,389 + RALBFv3_RS17140 0.54 -1.8
335,390 - RALBFv3_RS17140 0.54 -1.6
335,390 - RALBFv3_RS17140 0.54 -0.1
335,536 + RALBFv3_RS17140 0.68 -0.5
335,537 - RALBFv3_RS17140 0.68 +2.4
335,537 - RALBFv3_RS17140 0.68 -3.2
335,713 + RALBFv3_RS17140 0.84 +0.6
335,714 - RALBFv3_RS17140 0.84 -0.4
335,714 - RALBFv3_RS17140 0.84 +1.5
335,714 - RALBFv3_RS17140 0.84 +0.3
335,773 + -0.7
335,773 + -0.7
335,774 - -0.0
335,827 + -1.0
335,828 - -0.9
335,982 - +1.4
336,073 + RALBFv3_RS17145 0.13 -1.2
336,074 - RALBFv3_RS17145 0.13 +0.2
336,074 - RALBFv3_RS17145 0.13 +0.1
336,074 - RALBFv3_RS17145 0.13 -0.2
336,300 + RALBFv3_RS17145 0.36 +0.3
336,301 + RALBFv3_RS17145 0.36 +0.1
336,302 - RALBFv3_RS17145 0.36 -0.4
336,337 + RALBFv3_RS17145 0.40 -0.2
336,337 + RALBFv3_RS17145 0.40 +0.9
336,338 - RALBFv3_RS17145 0.40 -1.0
336,358 + RALBFv3_RS17145 0.42 +0.2
336,358 + RALBFv3_RS17145 0.42 -1.2
336,359 - RALBFv3_RS17145 0.42 -0.4
336,413 - RALBFv3_RS17145 0.47 -0.9
336,413 - RALBFv3_RS17145 0.47 -0.3
336,511 + RALBFv3_RS17145 0.57 +0.4
336,512 - RALBFv3_RS17145 0.57 -0.1
336,595 + RALBFv3_RS17145 0.65 -1.0
336,595 + RALBFv3_RS17145 0.65 +1.3
336,595 + RALBFv3_RS17145 0.65 -1.0
336,595 + RALBFv3_RS17145 0.65 -0.0
336,596 - RALBFv3_RS17145 0.65 +0.8
336,596 - RALBFv3_RS17145 0.65 -1.1
336,596 - RALBFv3_RS17145 0.65 +0.8
336,610 + RALBFv3_RS17145 0.67 +0.3
336,611 - RALBFv3_RS17145 0.67 -0.5
336,611 - RALBFv3_RS17145 0.67 +0.1
336,611 - RALBFv3_RS17145 0.67 -0.4
336,788 - RALBFv3_RS17145 0.84 -0.4
336,788 - RALBFv3_RS17145 0.84 -1.6
336,788 - RALBFv3_RS17145 0.84 +0.2
336,931 + +0.2
336,931 + +0.1
337,075 + RALBFv3_RS17150 0.21 +0.4
337,075 + RALBFv3_RS17150 0.21 -1.3
337,171 + RALBFv3_RS17150 0.51 +0.8
337,172 - RALBFv3_RS17150 0.51 +0.4
337,266 - RALBFv3_RS17150 0.80 +1.0
337,267 + RALBFv3_RS17150 0.80 -0.5
337,410 - +0.1
337,410 - -0.3
337,410 - +0.7
337,431 - -0.3
337,440 + +0.2
337,455 + +0.2
337,456 - -3.5
337,456 - +0.8
337,584 + +0.3
337,585 - +0.4
337,587 + -0.2
337,664 + RALBFv3_RS17155 0.16 +1.8
337,664 + RALBFv3_RS17155 0.16 +1.8
337,665 - RALBFv3_RS17155 0.17 -0.3
337,683 + RALBFv3_RS17155 0.19 +0.4
337,683 + RALBFv3_RS17155 0.19 -0.2
337,683 + RALBFv3_RS17155 0.19 +0.9
337,683 + RALBFv3_RS17155 0.19 -2.6
337,684 - +0.8
337,684 - RALBFv3_RS17155 0.19 -0.0
337,684 - RALBFv3_RS17155 0.19 -0.2
337,725 + RALBFv3_RS17155 0.23 -0.4
337,725 + RALBFv3_RS17155 0.23 -0.0
337,726 - RALBFv3_RS17155 0.23 -0.8
337,800 + RALBFv3_RS17155 0.32 +0.5
337,800 + RALBFv3_RS17155 0.32 +0.4
337,800 + RALBFv3_RS17155 0.32 +1.8
337,801 - RALBFv3_RS17155 0.32 +0.3
337,801 - RALBFv3_RS17155 0.32 -0.0
337,890 + RALBFv3_RS17155 0.42 +0.3

Or see this region's nucleotide sequence