Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06150

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06145 and RALBFv3_RS06150 are separated by 35 nucleotidesRALBFv3_RS06150 and RALBFv3_RS06155 are separated by 198 nucleotidesRALBFv3_RS06155 and RALBFv3_RS23725 are separated by 37 nucleotides RALBFv3_RS06145: RALBFv3_RS06145 - glutamate 5-kinase, at 1,367,731 to 1,368,855 _RS06145 RALBFv3_RS06150: RALBFv3_RS06150 - GTPase ObgE, at 1,368,891 to 1,369,991 _RS06150 RALBFv3_RS06155: RALBFv3_RS06155 - 50S ribosomal protein L27, at 1,370,190 to 1,370,450 _RS06155 RALBFv3_RS23725: RALBFv3_RS23725 - 50S ribosomal protein L21, at 1,370,488 to 1,370,799 _RS23725 Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -1 0 1at 1368.315 kb on - strand, within RALBFv3_RS06145at 1368.892 kb on + strandat 1370.889 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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1,368,315 - RALBFv3_RS06145 0.52 -0.9
1,368,892 + +0.7
1,370,889 - +1.2

Or see this region's nucleotide sequence