Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS06050 and RALBFv3_RS06055 are separated by 45 nucleotides RALBFv3_RS06055 and RALBFv3_RS06060 are separated by 198 nucleotides RALBFv3_RS06060 and RALBFv3_RS06065 are separated by 14 nucleotides
RALBFv3_RS06050: RALBFv3_RS06050 - hypothetical protein, at 1,345,309 to 1,346,655
_RS06050
RALBFv3_RS06055: RALBFv3_RS06055 - Lrp/AsnC family transcriptional regulator, at 1,346,701 to 1,347,177
_RS06055
RALBFv3_RS06060: RALBFv3_RS06060 - EamA family transporter, at 1,347,376 to 1,348,218
_RS06060
RALBFv3_RS06065: RALBFv3_RS06065 - DUF2817 domain-containing protein, at 1,348,233 to 1,349,315
_RS06065
Position (kb) 1347
1348
1349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1346.742 kb on - strand at 1346.742 kb on - strand at 1346.826 kb on - strand, within RALBFv3_RS06055 at 1346.826 kb on - strand, within RALBFv3_RS06055 at 1346.885 kb on + strand, within RALBFv3_RS06055 at 1346.977 kb on + strand, within RALBFv3_RS06055 at 1347.258 kb on - strand at 1347.607 kb on + strand, within RALBFv3_RS06060 at 1347.608 kb on - strand, within RALBFv3_RS06060 at 1347.796 kb on + strand, within RALBFv3_RS06060 at 1347.829 kb on + strand, within RALBFv3_RS06060 at 1347.829 kb on + strand, within RALBFv3_RS06060 at 1347.829 kb on + strand, within RALBFv3_RS06060 at 1347.830 kb on - strand, within RALBFv3_RS06060 at 1347.830 kb on - strand, within RALBFv3_RS06060 at 1347.830 kb on - strand, within RALBFv3_RS06060 at 1347.830 kb on - strand, within RALBFv3_RS06060 at 1347.831 kb on + strand, within RALBFv3_RS06060 at 1347.832 kb on - strand, within RALBFv3_RS06060 at 1347.832 kb on - strand, within RALBFv3_RS06060 at 1348.010 kb on - strand, within RALBFv3_RS06060 at 1348.285 kb on + strand at 1348.768 kb on + strand, within RALBFv3_RS06065 at 1348.769 kb on - strand, within RALBFv3_RS06065
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 1,346,742 - +3.2 1,346,742 - -0.3 1,346,826 - RALBFv3_RS06055 0.26 -0.5 1,346,826 - RALBFv3_RS06055 0.26 -0.1 1,346,885 + RALBFv3_RS06055 0.39 -0.1 1,346,977 + RALBFv3_RS06055 0.58 -2.0 1,347,258 - -1.3 1,347,607 + RALBFv3_RS06060 0.27 +0.0 1,347,608 - RALBFv3_RS06060 0.28 +0.1 1,347,796 + RALBFv3_RS06060 0.50 +0.1 1,347,829 + RALBFv3_RS06060 0.54 +0.4 1,347,829 + RALBFv3_RS06060 0.54 -2.8 1,347,829 + RALBFv3_RS06060 0.54 +0.0 1,347,830 - RALBFv3_RS06060 0.54 +0.1 1,347,830 - RALBFv3_RS06060 0.54 +0.8 1,347,830 - RALBFv3_RS06060 0.54 +0.3 1,347,830 - RALBFv3_RS06060 0.54 +0.3 1,347,831 + RALBFv3_RS06060 0.54 +0.7 1,347,832 - RALBFv3_RS06060 0.54 +1.1 1,347,832 - RALBFv3_RS06060 0.54 +0.3 1,348,010 - RALBFv3_RS06060 0.75 +1.7 1,348,285 + +0.2 1,348,768 + RALBFv3_RS06065 0.49 +1.7 1,348,769 - RALBFv3_RS06065 0.49 +0.9
Or see this region's nucleotide sequence