Experiment: KB with Sinomenine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3840 and Psyr_3841 are separated by 100 nucleotides Psyr_3841 and Psyr_3842 are separated by 233 nucleotides Psyr_3842 and Psyr_3843 are separated by 535 nucleotides
Psyr_3840: Psyr_3840 - conserved hypothetical protein, at 4,576,432 to 4,576,590
_3840
Psyr_3841: Psyr_3841 - conserved hypothetical protein, at 4,576,691 to 4,577,032
_3841
Psyr_3842: Psyr_3842 - SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit, at 4,577,266 to 4,580,112
_3842
Psyr_3843: Psyr_3843 - diguanylate cyclase/phosphodiesterase, at 4,580,648 to 4,582,939
_3843
Position (kb) 4577
4578
4579
4580
4581 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4576.350 kb on - strand at 4576.393 kb on + strand at 4576.444 kb on - strand at 4576.504 kb on + strand, within Psyr_3840 at 4576.504 kb on + strand, within Psyr_3840 at 4576.504 kb on + strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.540 kb on - strand, within Psyr_3840 at 4576.628 kb on - strand at 4576.891 kb on + strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.038 kb on + strand at 4577.039 kb on - strand at 4577.101 kb on + strand at 4577.109 kb on + strand at 4577.109 kb on + strand at 4577.110 kb on - strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.141 kb on + strand at 4577.141 kb on + strand at 4577.141 kb on + strand at 4577.142 kb on - strand at 4577.142 kb on - strand at 4577.142 kb on - strand at 4577.234 kb on + strand at 4577.234 kb on + strand at 4577.235 kb on - strand at 4577.235 kb on - strand at 4577.278 kb on + strand at 4577.278 kb on + strand at 4577.279 kb on - strand at 4577.653 kb on + strand, within Psyr_3842 at 4577.654 kb on - strand, within Psyr_3842 at 4577.654 kb on - strand, within Psyr_3842 at 4578.186 kb on - strand, within Psyr_3842 at 4578.859 kb on + strand, within Psyr_3842 at 4578.860 kb on - strand, within Psyr_3842 at 4579.116 kb on + strand, within Psyr_3842 at 4579.116 kb on + strand, within Psyr_3842 at 4579.116 kb on + strand, within Psyr_3842 at 4579.116 kb on + strand, within Psyr_3842 at 4579.117 kb on - strand, within Psyr_3842 at 4579.363 kb on + strand, within Psyr_3842 at 4579.363 kb on + strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.495 kb on - strand, within Psyr_3842 at 4579.495 kb on - strand, within Psyr_3842 at 4579.670 kb on - strand, within Psyr_3842 at 4579.670 kb on - strand, within Psyr_3842 at 4579.715 kb on - strand, within Psyr_3842 at 4580.316 kb on - strand at 4580.450 kb on + strand at 4580.560 kb on + strand at 4580.560 kb on + strand at 4580.573 kb on + strand at 4580.573 kb on + strand at 4580.574 kb on - strand at 4580.574 kb on - strand at 4580.574 kb on - strand at 4580.574 kb on - strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.586 kb on + strand at 4580.586 kb on + strand at 4580.586 kb on + strand at 4580.586 kb on + strand at 4580.587 kb on - strand at 4580.587 kb on - strand at 4580.595 kb on + strand at 4580.595 kb on + strand at 4580.595 kb on + strand at 4580.595 kb on + strand at 4580.595 kb on + strand at 4580.596 kb on - strand at 4580.596 kb on - strand at 4580.596 kb on - strand at 4580.638 kb on - strand at 4580.647 kb on + strand at 4580.647 kb on + strand at 4580.648 kb on - strand at 4580.670 kb on + strand at 4580.670 kb on + strand at 4580.670 kb on + strand at 4580.671 kb on - strand at 4580.700 kb on + strand at 4580.700 kb on + strand at 4580.700 kb on + strand at 4580.700 kb on + strand at 4580.700 kb on + strand at 4580.701 kb on - strand at 4580.701 kb on - strand at 4580.713 kb on + strand at 4580.714 kb on - strand at 4580.714 kb on - strand at 4580.782 kb on + strand at 4580.890 kb on + strand, within Psyr_3843 at 4580.890 kb on + strand, within Psyr_3843 at 4580.890 kb on + strand, within Psyr_3843 at 4580.891 kb on - strand, within Psyr_3843 at 4580.891 kb on - strand, within Psyr_3843 at 4580.891 kb on - strand, within Psyr_3843 at 4580.961 kb on + strand, within Psyr_3843 at 4580.962 kb on - strand, within Psyr_3843 at 4580.962 kb on - strand, within Psyr_3843 at 4580.962 kb on - strand, within Psyr_3843 at 4581.071 kb on + strand, within Psyr_3843 at 4581.110 kb on + strand, within Psyr_3843 at 4581.110 kb on + strand, within Psyr_3843 at 4581.110 kb on + strand, within Psyr_3843 at 4581.110 kb on + strand, within Psyr_3843 at 4581.111 kb on - strand, within Psyr_3843 at 4581.111 kb on - strand, within Psyr_3843 at 4581.111 kb on - strand, within Psyr_3843
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Sinomenine 10 mM remove 4,576,350 - +0.4 4,576,393 + +0.3 4,576,444 - -0.7 4,576,504 + Psyr_3840 0.45 -0.1 4,576,504 + Psyr_3840 0.45 -1.4 4,576,504 + Psyr_3840 0.45 +0.6 4,576,505 - Psyr_3840 0.46 -2.3 4,576,505 - Psyr_3840 0.46 +1.7 4,576,505 - Psyr_3840 0.46 -1.1 4,576,505 - Psyr_3840 0.46 -0.2 4,576,505 - Psyr_3840 0.46 -1.3 4,576,505 - Psyr_3840 0.46 -0.9 4,576,540 - Psyr_3840 0.68 -0.7 4,576,628 - -0.5 4,576,891 + Psyr_3841 0.58 +0.8 4,576,892 - Psyr_3841 0.59 +0.2 4,576,892 - Psyr_3841 0.59 -1.3 4,577,020 + -0.2 4,577,020 + -0.0 4,577,020 + +0.5 4,577,020 + +1.7 4,577,020 + +0.1 4,577,020 + -0.8 4,577,020 + -0.7 4,577,020 + -0.0 4,577,020 + -0.2 4,577,020 + -0.0 4,577,021 - -0.0 4,577,021 - -0.2 4,577,021 - +0.1 4,577,021 - -0.6 4,577,021 - -0.2 4,577,021 - +0.1 4,577,021 - +1.0 4,577,021 - -0.1 4,577,038 + -0.0 4,577,039 - -0.4 4,577,101 + -1.5 4,577,109 + +0.5 4,577,109 + +0.1 4,577,110 - +0.2 4,577,111 + +0.4 4,577,111 + -0.4 4,577,111 + -1.1 4,577,112 - -0.1 4,577,112 - -0.2 4,577,112 - +0.8 4,577,141 + +1.4 4,577,141 + +0.1 4,577,141 + -0.2 4,577,142 - -0.5 4,577,142 - -0.6 4,577,142 - -0.3 4,577,234 + -2.3 4,577,234 + +0.1 4,577,235 - +0.3 4,577,235 - -0.9 4,577,278 + +0.1 4,577,278 + -1.0 4,577,279 - -0.2 4,577,653 + Psyr_3842 0.14 +1.6 4,577,654 - Psyr_3842 0.14 -0.2 4,577,654 - Psyr_3842 0.14 -0.3 4,578,186 - Psyr_3842 0.32 -0.1 4,578,859 + Psyr_3842 0.56 -0.4 4,578,860 - Psyr_3842 0.56 +0.7 4,579,116 + Psyr_3842 0.65 -1.0 4,579,116 + Psyr_3842 0.65 -0.7 4,579,116 + Psyr_3842 0.65 -0.9 4,579,116 + Psyr_3842 0.65 -1.2 4,579,117 - Psyr_3842 0.65 +1.7 4,579,363 + Psyr_3842 0.74 -0.8 4,579,363 + Psyr_3842 0.74 -1.0 4,579,364 - Psyr_3842 0.74 +0.3 4,579,364 - Psyr_3842 0.74 -0.5 4,579,364 - Psyr_3842 0.74 -0.0 4,579,364 - Psyr_3842 0.74 -1.2 4,579,364 - Psyr_3842 0.74 +0.1 4,579,364 - Psyr_3842 0.74 -1.7 4,579,495 - Psyr_3842 0.78 -0.8 4,579,495 - Psyr_3842 0.78 -1.3 4,579,670 - Psyr_3842 0.84 -1.5 4,579,670 - Psyr_3842 0.84 -2.2 4,579,715 - Psyr_3842 0.86 -0.7 4,580,316 - -0.3 4,580,450 + -0.0 4,580,560 + -0.7 4,580,560 + -1.0 4,580,573 + +0.7 4,580,573 + -0.6 4,580,574 - +0.1 4,580,574 - +0.2 4,580,574 - -0.0 4,580,574 - -0.1 4,580,584 + +0.3 4,580,584 + +1.6 4,580,584 + -0.4 4,580,584 + +0.9 4,580,584 + -0.1 4,580,584 + +0.2 4,580,584 + -0.3 4,580,584 + -0.6 4,580,585 - -0.3 4,580,585 - +0.6 4,580,585 - -0.4 4,580,585 - +3.2 4,580,585 - -0.0 4,580,585 - +0.2 4,580,585 - +0.1 4,580,585 - -0.4 4,580,586 + -0.0 4,580,586 + -0.2 4,580,586 + -0.4 4,580,586 + +1.6 4,580,587 - -0.0 4,580,587 - -0.5 4,580,595 + -0.3 4,580,595 + +1.3 4,580,595 + +0.1 4,580,595 + -0.3 4,580,595 + +0.2 4,580,596 - +1.3 4,580,596 - -0.5 4,580,596 - -1.1 4,580,638 - +0.1 4,580,647 + -0.2 4,580,647 + +0.1 4,580,648 - +1.7 4,580,670 + +0.7 4,580,670 + -0.0 4,580,670 + -0.7 4,580,671 - -0.5 4,580,700 + +0.4 4,580,700 + -2.0 4,580,700 + -0.0 4,580,700 + -0.6 4,580,700 + +0.0 4,580,701 - +0.4 4,580,701 - -0.2 4,580,713 + -0.6 4,580,714 - -0.3 4,580,714 - -0.1 4,580,782 + +0.5 4,580,890 + Psyr_3843 0.11 +1.7 4,580,890 + Psyr_3843 0.11 -0.5 4,580,890 + Psyr_3843 0.11 -0.1 4,580,891 - Psyr_3843 0.11 +0.2 4,580,891 - Psyr_3843 0.11 +0.5 4,580,891 - Psyr_3843 0.11 -0.1 4,580,961 + Psyr_3843 0.14 -1.0 4,580,962 - Psyr_3843 0.14 +0.3 4,580,962 - Psyr_3843 0.14 -0.1 4,580,962 - Psyr_3843 0.14 -1.2 4,581,071 + Psyr_3843 0.18 +0.3 4,581,110 + Psyr_3843 0.20 -0.3 4,581,110 + Psyr_3843 0.20 +0.4 4,581,110 + Psyr_3843 0.20 +1.2 4,581,110 + Psyr_3843 0.20 -0.2 4,581,111 - Psyr_3843 0.20 +0.4 4,581,111 - Psyr_3843 0.20 +0.4 4,581,111 - Psyr_3843 0.20 -0.0
Or see this region's nucleotide sequence