Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3511

Experiment: RCH2 defined with Nickel (II) chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3509 and Pf6N2E2_3510 are separated by 236 nucleotidesPf6N2E2_3510 and Pf6N2E2_3511 are separated by 47 nucleotidesPf6N2E2_3511 and Pf6N2E2_3512 are separated by 17 nucleotides Pf6N2E2_3509 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 4,090,187 to 4,092,133 _3509 Pf6N2E2_3510 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 4,092,370 to 4,092,822 _3510 Pf6N2E2_3511 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 4,092,870 to 4,093,334 _3511 Pf6N2E2_3512 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 4,093,352 to 4,094,707 _3512 Position (kb) 4092 4093 4094Strain fitness (log2 ratio) -2 -1 0 1 2at 4091.926 kb on - strand, within Pf6N2E2_3509at 4092.016 kb on + strandat 4092.016 kb on + strandat 4092.016 kb on + strandat 4092.017 kb on - strandat 4092.017 kb on - strandat 4092.017 kb on - strandat 4092.285 kb on - strandat 4092.340 kb on + strandat 4092.354 kb on + strandat 4092.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Nickel (II) chloride 0.04 mM
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4,091,926 - Pf6N2E2_3509 0.89 -1.1
4,092,016 + +1.2
4,092,016 + -1.1
4,092,016 + +0.2
4,092,017 - +0.7
4,092,017 - -0.2
4,092,017 - -0.3
4,092,285 - +1.1
4,092,340 + +0.1
4,092,354 + -2.5
4,092,791 + +1.8

Or see this region's nucleotide sequence