Experiment: RCH2 defined with Nickel (II) chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_250 and Pf6N2E2_251 are separated by 184 nucleotides Pf6N2E2_251 and Pf6N2E2_252 overlap by 39 nucleotides
Pf6N2E2_250 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 311,560 to 312,495
_250
Pf6N2E2_251 - transcriptional regulator, at 312,680 to 314,167
_251
Pf6N2E2_252 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 314,129 to 316,918
_252
Position (kb) 312
313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2 at 311.753 kb on - strand, within Pf6N2E2_250 at 311.788 kb on + strand, within Pf6N2E2_250 at 311.788 kb on + strand, within Pf6N2E2_250 at 311.788 kb on + strand, within Pf6N2E2_250 at 311.788 kb on + strand, within Pf6N2E2_250 at 311.933 kb on - strand, within Pf6N2E2_250 at 311.987 kb on + strand, within Pf6N2E2_250 at 311.987 kb on + strand, within Pf6N2E2_250 at 311.987 kb on + strand, within Pf6N2E2_250 at 311.987 kb on + strand, within Pf6N2E2_250 at 312.578 kb on + strand at 312.619 kb on - strand at 312.653 kb on + strand at 312.839 kb on + strand, within Pf6N2E2_251 at 312.962 kb on + strand, within Pf6N2E2_251 at 312.962 kb on + strand at 312.962 kb on + strand, within Pf6N2E2_251 at 312.963 kb on - strand, within Pf6N2E2_251 at 312.989 kb on + strand, within Pf6N2E2_251 at 313.734 kb on + strand, within Pf6N2E2_251 at 313.735 kb on - strand, within Pf6N2E2_251 at 313.735 kb on - strand, within Pf6N2E2_251 at 313.929 kb on + strand, within Pf6N2E2_251 at 314.027 kb on + strand at 314.027 kb on + strand at 314.028 kb on - strand at 314.028 kb on - strand at 314.028 kb on - strand at 314.028 kb on - strand at 314.082 kb on - strand at 314.655 kb on + strand, within Pf6N2E2_252 at 314.691 kb on + strand, within Pf6N2E2_252 at 314.827 kb on - strand, within Pf6N2E2_252 at 314.827 kb on - strand, within Pf6N2E2_252 at 315.036 kb on + strand, within Pf6N2E2_252 at 315.056 kb on + strand, within Pf6N2E2_252 at 315.056 kb on + strand, within Pf6N2E2_252
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Nickel (II) chloride 0.04 mM remove 311,753 - Pf6N2E2_250 0.21 -2.6 311,788 + Pf6N2E2_250 0.24 +0.9 311,788 + Pf6N2E2_250 0.24 -1.1 311,788 + Pf6N2E2_250 0.24 +0.0 311,788 + Pf6N2E2_250 0.24 +2.2 311,933 - Pf6N2E2_250 0.40 +0.1 311,987 + Pf6N2E2_250 0.46 -0.5 311,987 + Pf6N2E2_250 0.46 -1.0 311,987 + Pf6N2E2_250 0.46 +1.3 311,987 + Pf6N2E2_250 0.46 -0.4 312,578 + +0.7 312,619 - -1.1 312,653 + -0.1 312,839 + Pf6N2E2_251 0.11 -1.4 312,962 + Pf6N2E2_251 0.19 -0.5 312,962 + +1.9 312,962 + Pf6N2E2_251 0.19 -0.4 312,963 - Pf6N2E2_251 0.19 -1.7 312,989 + Pf6N2E2_251 0.21 +0.6 313,734 + Pf6N2E2_251 0.71 -1.2 313,735 - Pf6N2E2_251 0.71 +0.0 313,735 - Pf6N2E2_251 0.71 -1.0 313,929 + Pf6N2E2_251 0.84 -1.9 314,027 + +0.7 314,027 + +1.1 314,028 - +0.5 314,028 - +1.0 314,028 - +0.1 314,028 - +0.0 314,082 - -0.4 314,655 + Pf6N2E2_252 0.19 +1.6 314,691 + Pf6N2E2_252 0.20 +1.2 314,827 - Pf6N2E2_252 0.25 -0.8 314,827 - Pf6N2E2_252 0.25 -1.0 315,036 + Pf6N2E2_252 0.33 -0.1 315,056 + Pf6N2E2_252 0.33 +0.6 315,056 + Pf6N2E2_252 0.33 +1.0
Or see this region's nucleotide sequence