Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1029

Experiment: RCH2 defined with Nickel (II) chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1028 and Pf6N2E2_1029 are separated by 126 nucleotidesPf6N2E2_1029 and Pf6N2E2_1030 are separated by 151 nucleotides Pf6N2E2_1028 - Transcriptional regulator, LysR family, at 1,201,891 to 1,202,796 _1028 Pf6N2E2_1029 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 1,202,923 to 1,203,717 _1029 Pf6N2E2_1030 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 1,203,869 to 1,204,957 _1030 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1202.449 kb on + strand, within Pf6N2E2_1028at 1202.449 kb on + strand, within Pf6N2E2_1028at 1202.449 kb on + strand, within Pf6N2E2_1028at 1202.704 kb on + strand, within Pf6N2E2_1028at 1202.881 kb on - strandat 1202.899 kb on + strandat 1202.946 kb on + strandat 1203.058 kb on + strand, within Pf6N2E2_1029at 1203.058 kb on + strand, within Pf6N2E2_1029at 1203.058 kb on + strand, within Pf6N2E2_1029at 1203.059 kb on - strand, within Pf6N2E2_1029at 1203.059 kb on - strand, within Pf6N2E2_1029at 1203.059 kb on - strand, within Pf6N2E2_1029at 1203.193 kb on - strand, within Pf6N2E2_1029at 1203.220 kb on + strand, within Pf6N2E2_1029at 1203.446 kb on + strand, within Pf6N2E2_1029at 1203.446 kb on + strand, within Pf6N2E2_1029at 1203.447 kb on - strand, within Pf6N2E2_1029at 1203.746 kb on - strandat 1203.760 kb on + strandat 1203.853 kb on - strandat 1203.945 kb on + strandat 1204.009 kb on - strand, within Pf6N2E2_1030at 1204.009 kb on - strand, within Pf6N2E2_1030at 1204.181 kb on + strand, within Pf6N2E2_1030at 1204.182 kb on - strand, within Pf6N2E2_1030at 1204.359 kb on + strand, within Pf6N2E2_1030at 1204.380 kb on + strand, within Pf6N2E2_1030at 1204.381 kb on - strand, within Pf6N2E2_1030at 1204.438 kb on - strand, within Pf6N2E2_1030at 1204.448 kb on - strand, within Pf6N2E2_1030at 1204.448 kb on - strand, within Pf6N2E2_1030at 1204.448 kb on - strand, within Pf6N2E2_1030at 1204.500 kb on + strand, within Pf6N2E2_1030at 1204.500 kb on + strand, within Pf6N2E2_1030at 1204.500 kb on + strand, within Pf6N2E2_1030at 1204.501 kb on - strand, within Pf6N2E2_1030at 1204.501 kb on - strand, within Pf6N2E2_1030at 1204.501 kb on - strand, within Pf6N2E2_1030at 1204.501 kb on - strand, within Pf6N2E2_1030at 1204.512 kb on + strand, within Pf6N2E2_1030at 1204.599 kb on + strand, within Pf6N2E2_1030at 1204.599 kb on + strand, within Pf6N2E2_1030at 1204.599 kb on + strand, within Pf6N2E2_1030at 1204.599 kb on + strand, within Pf6N2E2_1030at 1204.599 kb on + strand, within Pf6N2E2_1030at 1204.599 kb on + strand, within Pf6N2E2_1030at 1204.600 kb on - strand, within Pf6N2E2_1030at 1204.600 kb on - strand, within Pf6N2E2_1030at 1204.600 kb on - strand, within Pf6N2E2_1030at 1204.600 kb on - strand, within Pf6N2E2_1030

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Nickel (II) chloride 0.04 mM
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1,202,449 + Pf6N2E2_1028 0.62 +2.6
1,202,449 + Pf6N2E2_1028 0.62 +0.5
1,202,449 + Pf6N2E2_1028 0.62 +0.3
1,202,704 + Pf6N2E2_1028 0.90 -1.4
1,202,881 - -0.3
1,202,899 + +0.9
1,202,946 + -0.2
1,203,058 + Pf6N2E2_1029 0.17 +1.0
1,203,058 + Pf6N2E2_1029 0.17 -1.6
1,203,058 + Pf6N2E2_1029 0.17 -0.9
1,203,059 - Pf6N2E2_1029 0.17 -1.8
1,203,059 - Pf6N2E2_1029 0.17 +0.4
1,203,059 - Pf6N2E2_1029 0.17 -1.9
1,203,193 - Pf6N2E2_1029 0.34 -2.0
1,203,220 + Pf6N2E2_1029 0.37 -1.0
1,203,446 + Pf6N2E2_1029 0.66 -1.9
1,203,446 + Pf6N2E2_1029 0.66 -1.9
1,203,447 - Pf6N2E2_1029 0.66 -1.2
1,203,746 - +2.1
1,203,760 + +1.9
1,203,853 - +1.5
1,203,945 + +1.7
1,204,009 - Pf6N2E2_1030 0.13 +0.4
1,204,009 - Pf6N2E2_1030 0.13 +0.7
1,204,181 + Pf6N2E2_1030 0.29 -0.6
1,204,182 - Pf6N2E2_1030 0.29 -1.5
1,204,359 + Pf6N2E2_1030 0.45 -1.3
1,204,380 + Pf6N2E2_1030 0.47 -1.2
1,204,381 - Pf6N2E2_1030 0.47 -1.2
1,204,438 - Pf6N2E2_1030 0.52 +0.7
1,204,448 - Pf6N2E2_1030 0.53 +0.8
1,204,448 - Pf6N2E2_1030 0.53 +0.4
1,204,448 - Pf6N2E2_1030 0.53 +0.3
1,204,500 + Pf6N2E2_1030 0.58 -3.4
1,204,500 + Pf6N2E2_1030 0.58 -0.6
1,204,500 + Pf6N2E2_1030 0.58 +1.7
1,204,501 - Pf6N2E2_1030 0.58 -0.6
1,204,501 - Pf6N2E2_1030 0.58 +0.3
1,204,501 - Pf6N2E2_1030 0.58 -3.3
1,204,501 - Pf6N2E2_1030 0.58 -0.4
1,204,512 + Pf6N2E2_1030 0.59 -1.6
1,204,599 + Pf6N2E2_1030 0.67 -1.0
1,204,599 + Pf6N2E2_1030 0.67 +2.1
1,204,599 + Pf6N2E2_1030 0.67 +1.4
1,204,599 + Pf6N2E2_1030 0.67 +0.0
1,204,599 + Pf6N2E2_1030 0.67 -0.6
1,204,599 + Pf6N2E2_1030 0.67 +0.3
1,204,600 - Pf6N2E2_1030 0.67 +0.3
1,204,600 - Pf6N2E2_1030 0.67 -0.2
1,204,600 - Pf6N2E2_1030 0.67 -0.6
1,204,600 - Pf6N2E2_1030 0.67 -0.7

Or see this region's nucleotide sequence