Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21650

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
4,879,869	+		PFLU_RS21645	0.75	+1.8
4,879,870	-		PFLU_RS21645	0.75	-0.3
4,880,057	+		PFLU_RS21645	0.83	+0.3
4,880,057	+		PFLU_RS21645	0.83	+0.7
4,880,057	+		PFLU_RS21645	0.83	+2.7
4,880,058	-		PFLU_RS21645	0.83	-1.8
4,880,281	+				+2.2
4,880,281	+				-0.1
4,880,281	+				-0.7
4,880,281	+				+0.1
4,880,281	+				+1.8
4,880,281	+				-0.1
4,880,281	+				+1.5
4,880,281	+				+2.1
4,880,281	+				+0.8
4,880,281	+				+2.8
4,880,282	-				+1.2
4,880,282	-				+1.7
4,880,282	-				+2.2
4,880,282	-				+1.7
4,880,282	-				+2.2
4,880,286	+				+2.8
4,880,286	+				+1.4
4,880,287	-				+3.5
4,880,287	-				-0.9
4,880,372	-				+0.5
4,880,389	+				+0.8
4,880,390	-				+2.2
4,880,390	-				-0.3
4,880,390	-				+0.5
4,880,446	+				+1.0
4,880,446	+				+1.6
4,880,446	+				+0.7
4,880,446	+				-2.6
4,880,446	+				+0.6
4,880,446	+				-2.1
4,880,446	+				+0.7
4,880,446	+				-0.4
4,880,446	+				-0.8
4,880,446	+				+2.2
4,880,446	+				+3.1
4,880,447	-				+4.4
4,880,447	-				-0.4
4,880,447	-				+2.8
4,880,447	-				+1.2
4,880,447	-				-0.9
4,880,454	+				+2.3
4,880,454	+				-0.2
4,880,455	-				+1.6
4,880,464	-				-2.9
4,880,475	+				+1.9
4,880,475	+				+0.8
4,880,475	+				+1.2
4,880,475	+				-0.4
4,880,475	+				+3.5
4,880,475	+				+2.0
4,880,475	+				+2.8
4,880,475	+				+2.3
4,880,475	+				+2.2
4,880,475	+				-0.1
4,880,475	+				+1.9
4,880,475	+				-0.6
4,880,475	+				+0.6
4,880,475	+				+2.3
4,880,475	+				-0.2
4,880,475	+				+0.5
4,880,475	+				+3.6
4,880,475	+				-0.9
4,880,475	+				+0.4
4,880,475	+				-2.7
4,880,475	+				+2.0
4,880,475	+				+2.5
4,880,475	+				+1.6
4,880,475	+				+1.3
4,880,475	+				+3.9
4,880,475	+				-0.9
4,880,475	+				-1.7
4,880,475	+				-2.4
4,880,475	+				+1.8
4,880,476	-				+2.0
4,880,476	-				+0.2
4,880,476	-				-1.4
4,880,476	-				+1.3
4,880,476	-				-1.9
4,880,476	-				-0.9
4,880,476	-				+0.3
4,880,476	-				+2.0
4,880,476	-				+0.3
4,880,476	-				+1.9
4,880,476	-				+3.1
4,880,476	-				-1.9
4,880,476	-				-0.3
4,880,476	-				+2.3
4,880,476	-				-0.0
4,880,476	-				-0.1
4,880,476	-				+1.7
4,880,476	-				+0.2
4,880,476	-				+2.7
4,880,476	-				-0.5
4,880,476	-				+0.5
4,880,476	-				+0.8
4,880,476	-				-0.6
4,880,476	-				+3.7
4,880,495	+				+1.4
4,880,495	+				-0.1
4,880,495	+				-0.9
4,880,495	+				+0.2
4,880,495	+				+0.8
4,880,495	+				+1.4
4,880,495	+				-2.1
4,880,495	+				+1.6
4,880,495	+				-0.3
4,880,495	+				-1.1
4,880,495	+				-0.6
4,880,495	+				+1.1
4,880,495	+				+0.6
4,880,495	+				+0.3
4,880,496	-				+0.7
4,880,496	-				+2.0
4,880,496	-				+2.3
4,880,496	-				+1.8
4,880,496	-				-1.5
4,880,496	-				-0.1
4,880,496	-				-0.9
4,880,496	-				-2.4
4,880,496	-				-2.0
4,880,496	-				-1.0
4,880,496	-				+0.9
4,880,496	-				-1.6
4,880,496	-				+0.6
4,880,627	+		PFLU_RS21650	0.23	-1.4
4,880,627	+		PFLU_RS21650	0.23	+0.7
4,880,627	+		PFLU_RS21650	0.23	+2.5
4,880,627	+		PFLU_RS21650	0.23	+0.0
4,880,627	+		PFLU_RS21650	0.23	-3.0
4,880,628	-		PFLU_RS21650	0.23	+2.3
4,880,628	-		PFLU_RS21650	0.23	+0.6
4,880,711	-		PFLU_RS21650	0.34	+1.1
4,880,962	+		PFLU_RS21650	0.66	-0.9
4,880,962	+		PFLU_RS21650	0.66	-0.1
4,880,962	+		PFLU_RS21650	0.66	+1.2
4,880,962	+		PFLU_RS21650	0.66	+1.7
4,880,962	+		PFLU_RS21650	0.66	+1.5
4,880,962	+		PFLU_RS21650	0.66	-0.3
4,880,962	+		PFLU_RS21650	0.66	-2.3
4,880,962	+		PFLU_RS21650	0.66	-2.4
4,880,962	+		PFLU_RS21650	0.66	+0.7
4,880,962	+		PFLU_RS21650	0.66	+1.2
4,880,962	+		PFLU_RS21650	0.66	+1.1
4,880,962	+		PFLU_RS21650	0.66	+2.4
4,880,962	+		PFLU_RS21650	0.66	+1.0
4,880,962	+		PFLU_RS21650	0.66	-1.0
4,880,962	+		PFLU_RS21650	0.66	-0.2
4,880,962	+		PFLU_RS21650	0.66	-1.8
4,880,963	-		PFLU_RS21650	0.66	-2.7
4,880,963	-		PFLU_RS21650	0.66	+0.8
4,880,963	-		PFLU_RS21650	0.66	+0.1
4,880,963	-		PFLU_RS21650	0.66	+1.5
4,880,963	-		PFLU_RS21650	0.66	-0.5
4,880,963	-		PFLU_RS21650	0.66	-1.5
4,880,963	-		PFLU_RS21650	0.66	+1.1
4,881,017	+		PFLU_RS21650	0.72	-1.1
4,881,017	+		PFLU_RS21650	0.72	-0.9
4,881,017	+		PFLU_RS21650	0.72	+0.6
4,881,017	+		PFLU_RS21650	0.72	-0.5
4,881,018	-		PFLU_RS21650	0.73	+1.0
4,881,018	-		PFLU_RS21650	0.73	-1.5
4,881,085	+		PFLU_RS21650	0.81	+0.9
4,881,086	-		PFLU_RS21650	0.81	+1.0
4,881,123	+		PFLU_RS21650	0.86	+2.2
4,881,124	-		PFLU_RS21650	0.86	-3.1
4,881,224	+				+2.5
4,881,224	+				-1.5
4,881,225	-				+1.5
4,881,225	-				+1.1
4,881,225	-				-2.3
4,881,233	+				-0.0
4,881,233	+				+1.1
4,881,233	+				-0.3
4,881,233	+				+0.9
4,881,233	+				+0.1
4,881,233	+				-2.0
4,881,233	+				-1.4
4,881,233	+				+1.9
4,881,233	+				+1.2
4,881,233	+				+1.6
4,881,233	+				-1.4
4,881,234	-				+2.4
4,881,234	-				-1.9
4,881,234	-				+1.7
4,881,234	-				-1.9
4,881,234	-				-1.5
4,881,234	-				+0.6
4,881,234	-				-0.1
4,881,234	-				-0.1
4,881,234	-				+1.9
4,881,234	-				+1.7
4,881,234	-				-1.1
4,881,234	-				-0.5
4,881,234	-				-2.3
4,881,234	-				+2.3
4,881,325	+		PFLU_RS21655	0.19	+2.4
4,881,325	+		PFLU_RS21655	0.19	+2.2
4,881,325	+		PFLU_RS21655	0.19	+0.8
4,881,326	-		PFLU_RS21655	0.19	+2.9
4,881,332	+		PFLU_RS21655	0.21	+2.1
4,881,408	+		PFLU_RS21655	0.40	+0.9
4,881,408	+		PFLU_RS21655	0.40	-0.1
4,881,408	+		PFLU_RS21655	0.40	+1.7
4,881,408	+		PFLU_RS21655	0.40	+2.9
4,881,408	+		PFLU_RS21655	0.40	+0.3
4,881,409	-		PFLU_RS21655	0.41	-0.4
4,881,409	-		PFLU_RS21655	0.41	-0.0
4,881,522	-		PFLU_RS21655	0.70	+0.7
4,881,549	-		PFLU_RS21655	0.77	+3.3
4,881,579	+		PFLU_RS21655	0.84	+2.7
4,881,580	-		PFLU_RS21655	0.85	+2.9
4,881,658	+				+1.7
4,881,658	+				+3.2
4,881,659	-				+2.9
4,881,703	+				-0.2
4,881,703	+				-1.8
4,881,703	+				-1.8
4,881,703	+				+2.6
4,881,703	+				-0.5
4,881,704	-				-0.7
4,881,704	-				-2.3
4,881,921	+		PFLU_RS21660	0.17	+4.2
4,881,921	+		PFLU_RS21660	0.17	+3.5
4,881,921	+		PFLU_RS21660	0.17	+5.1
4,881,921	+		PFLU_RS21660	0.17	+4.2
4,881,921	+		PFLU_RS21660	0.17	+4.0
4,881,921	+		PFLU_RS21660	0.17	+4.2
4,881,921	+		PFLU_RS21660	0.17	+4.4
4,881,922	-		PFLU_RS21660	0.17	+4.2
4,881,924	+		PFLU_RS21660	0.18	+4.1
4,881,924	+		PFLU_RS21660	0.18	+3.8
4,881,924	+		PFLU_RS21660	0.18	+3.6
4,881,925	-		PFLU_RS21660	0.18	+3.5
4,881,925	-		PFLU_RS21660	0.18	+4.1
4,881,925	-		PFLU_RS21660	0.18	+3.7
4,881,925	-		PFLU_RS21660	0.18	+3.6
4,882,024	+		PFLU_RS21660	0.31	+4.0
4,882,024	+		PFLU_RS21660	0.31	+4.2
4,882,024	+		PFLU_RS21660	0.31	+3.3
4,882,025	-		PFLU_RS21660	0.31	+4.0
4,882,025	-		PFLU_RS21660	0.31	+4.0
4,882,025	-		PFLU_RS21660	0.31	+3.0
4,882,025	-		PFLU_RS21660	0.31	+3.3
4,882,111	+		PFLU_RS21660	0.43	+4.6
4,882,111	+		PFLU_RS21660	0.43	+3.8
4,882,111	+		PFLU_RS21660	0.43	+3.5
4,882,111	+		PFLU_RS21660	0.43	+4.7
4,882,111	+		PFLU_RS21660	0.43	+2.3
4,882,111	+		PFLU_RS21660	0.43	+4.0
4,882,111	+		PFLU_RS21660	0.43	+3.4
4,882,112	-		PFLU_RS21660	0.43	+2.8
4,882,112	-		PFLU_RS21660	0.43	+4.2
4,882,112	-		PFLU_RS21660	0.43	+3.6
4,882,131	+		PFLU_RS21660	0.45	+4.0
4,882,131	+		PFLU_RS21660	0.45	+3.4
4,882,132	-		PFLU_RS21660	0.46	+4.7
4,882,132	-		PFLU_RS21660	0.46	+3.1
4,882,132	-		PFLU_RS21660	0.46	+3.7
4,882,177	+		PFLU_RS21660	0.52	+3.8