Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19575

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
4,427,923	+				+0.4
4,427,924	-				-3.3
4,427,924	-				+2.8
4,427,924	-				+2.0
4,428,034	+		PFLU_RS19570	0.10	-1.2
4,428,034	+		PFLU_RS19570	0.10	-1.2
4,428,034	+		PFLU_RS19570	0.10	-0.8
4,428,034	+		PFLU_RS19570	0.10	+0.0
4,428,035	-		PFLU_RS19570	0.10	-0.1
4,428,035	-		PFLU_RS19570	0.10	-2.1
4,428,035	-		PFLU_RS19570	0.10	+1.6
4,428,035	-		PFLU_RS19570	0.10	+0.9
4,428,035	-		PFLU_RS19570	0.10	+1.3
4,428,035	-		PFLU_RS19570	0.10	+2.0
4,428,035	-		PFLU_RS19570	0.10	-1.8
4,428,035	-		PFLU_RS19570	0.10	+2.4
4,428,035	-		PFLU_RS19570	0.10	-2.0
4,428,035	-		PFLU_RS19570	0.10	-1.8
4,428,035	-		PFLU_RS19570	0.10	-1.0
4,428,035	-		PFLU_RS19570	0.10	+0.9
4,428,035	-		PFLU_RS19570	0.10	+0.8
4,428,035	-		PFLU_RS19570	0.10	-0.4
4,428,035	-		PFLU_RS19570	0.10	+1.4
4,428,035	-		PFLU_RS19570	0.10	+0.2
4,428,035	-		PFLU_RS19570	0.10	-0.0
4,428,035	-		PFLU_RS19570	0.10	+1.9
4,428,169	-		PFLU_RS19570	0.30	+0.8
4,428,547	+		PFLU_RS19570	0.85	-0.4
4,428,547	+		PFLU_RS19570	0.85	-1.7
4,428,548	-		PFLU_RS19570	0.85	-0.4
4,428,548	-		PFLU_RS19570	0.85	-0.1
4,428,551	+		PFLU_RS19570	0.86	+0.8
4,428,551	+		PFLU_RS19570	0.86	+1.0
4,428,551	+		PFLU_RS19570	0.86	+3.2
4,428,552	-		PFLU_RS19570	0.86	+1.7
4,428,589	+				+0.8
4,428,589	+				+0.6
4,428,589	+				+0.0
4,428,589	+				-2.1
4,428,589	+				-1.0
4,428,589	+				+1.1
4,428,589	+				-2.0
4,428,589	+				+2.0
4,428,589	+				+1.1
4,428,589	+				-1.7
4,428,589	+				+2.5
4,428,589	+				-1.6
4,428,589	+				+1.3
4,428,589	+				+1.5
4,428,589	+				+1.1
4,428,589	+				-0.4
4,428,589	+				-1.3
4,428,590	-				-1.0
4,428,590	-				+1.6
4,428,590	-				-1.8
4,428,590	-				+2.2
4,428,590	-				+0.3
4,428,590	-				+0.3
4,428,590	-				+1.1
4,428,590	-				-0.8
4,428,590	-				-2.0
4,428,590	-				+2.3
4,428,590	-				+0.2
4,428,590	-				+2.4
4,428,590	-				+0.5
4,428,590	-				-0.6
4,428,590	-				+1.4
4,428,590	-				-0.3
4,428,590	-				+0.7
4,428,590	-				+1.2
4,428,590	-				-2.0
4,428,590	-				-1.5
4,428,590	-				+3.2
4,428,590	-				+0.3
4,428,590	-				-1.8
4,428,590	-				-2.1
4,428,651	+				-0.7
4,428,679	+				-0.2
4,428,679	+				-0.8
4,428,680	-				-1.6
4,428,680	-				-1.5
4,428,680	-				+1.6
4,428,722	+				+1.7
4,428,723	-				+2.3
4,428,723	-				-1.0
4,428,743	+				-0.0
4,428,743	+				-0.2
4,428,744	-				-0.7
4,428,762	+				+0.9
4,428,762	+				+1.5
4,428,763	-				+0.3
4,428,763	-				-0.7
4,428,794	+				+0.9
4,428,794	+				-2.2
4,428,794	+				+3.5
4,428,794	+				-1.0
4,428,794	+				+0.0
4,428,795	-				-1.2
4,428,795	-				-0.0
4,428,797	-				+0.1
4,428,797	-				-2.6
4,428,797	-				+1.6
4,428,797	-				-0.2
4,428,797	-				-1.7
4,428,920	+				+0.2
4,428,920	+				+3.4
4,428,921	-				-1.3
4,428,934	+				-2.4
4,428,934	+				-1.3
4,428,935	-				-1.6
4,429,149	+				-1.3
4,429,150	-				+1.7
4,429,150	-				-1.1
4,429,150	-				+3.1
4,429,150	-				+2.6
4,429,263	+				-1.5
4,429,263	+				-2.1
4,429,263	+				+0.1
4,429,263	+				+2.3
4,429,264	-				-1.4
4,429,264	-				+2.3
4,429,264	-				-1.2
4,429,264	-				+1.6
4,429,264	-				+1.4
4,429,335	+				+1.6
4,429,336	-				+0.3
4,429,336	-				+1.2
4,429,495	-		PFLU_RS19575	0.10	-1.5
4,429,495	-		PFLU_RS19575	0.10	-1.5
4,429,518	+		PFLU_RS19575	0.11	+2.1
4,429,587	+		PFLU_RS19575	0.12	+0.9
4,429,671	+		PFLU_RS19575	0.13	+1.7
4,429,671	+		PFLU_RS19575	0.13	+1.4
4,429,671	+		PFLU_RS19575	0.13	-0.2
4,429,671	+		PFLU_RS19575	0.13	-1.0
4,429,671	+		PFLU_RS19575	0.13	+2.0
4,429,672	-		PFLU_RS19575	0.13	-1.6
4,429,672	-		PFLU_RS19575	0.13	+2.4
4,429,672	-		PFLU_RS19575	0.13	+0.3
4,429,682	-		PFLU_RS19575	0.13	-2.5
4,429,865	+		PFLU_RS19575	0.16	+0.6
4,429,865	+		PFLU_RS19575	0.16	+1.9
4,429,865	+		PFLU_RS19575	0.16	-1.6
4,429,865	+		PFLU_RS19575	0.16	+1.5
4,429,865	+		PFLU_RS19575	0.16	-2.1
4,429,865	+		PFLU_RS19575	0.16	-0.2
4,429,865	+		PFLU_RS19575	0.16	+0.2
4,429,865	+		PFLU_RS19575	0.16	+0.9
4,429,865	+		PFLU_RS19575	0.16	+2.2
4,429,865	+		PFLU_RS19575	0.16	+0.4
4,429,866	-		PFLU_RS19575	0.16	+2.3
4,429,866	-		PFLU_RS19575	0.16	-2.8
4,429,866	-		PFLU_RS19575	0.16	-2.0
4,429,866	-		PFLU_RS19575	0.16	+1.0
4,429,866	-		PFLU_RS19575	0.16	+1.8
4,429,980	+		PFLU_RS19575	0.18	+1.6
4,430,015	+		PFLU_RS19575	0.19	+0.8
4,430,205	+		PFLU_RS19575	0.22	-1.8
4,430,205	+		PFLU_RS19575	0.22	-1.0
4,430,205	+		PFLU_RS19575	0.22	+1.1
4,430,205	+		PFLU_RS19575	0.22	-1.8
4,430,205	+		PFLU_RS19575	0.22	+2.1
4,430,205	+		PFLU_RS19575	0.22	+1.3
4,430,205	+		PFLU_RS19575	0.22	-0.4
4,430,205	+		PFLU_RS19575	0.22	+1.9
4,430,206	-		PFLU_RS19575	0.22	+2.4
4,430,206	-		PFLU_RS19575	0.22	-0.7
4,430,206	-		PFLU_RS19575	0.22	+1.7
4,430,214	+		PFLU_RS19575	0.22	-2.1
4,430,214	+		PFLU_RS19575	0.22	+0.1
4,430,214	+		PFLU_RS19575	0.22	-1.5
4,430,215	-		PFLU_RS19575	0.22	+0.5
4,430,215	-		PFLU_RS19575	0.22	-2.6
4,430,215	-		PFLU_RS19575	0.22	+0.9
4,430,342	+		PFLU_RS19575	0.24	+1.9
4,430,343	-		PFLU_RS19575	0.24	-1.6
4,430,343	-		PFLU_RS19575	0.24	+1.3
4,430,379	+		PFLU_RS19575	0.24	+0.6
4,430,379	+		PFLU_RS19575	0.24	+2.0
4,430,379	+		PFLU_RS19575	0.24	+1.9
4,430,379	+		PFLU_RS19575	0.24	-2.1
4,430,380	-		PFLU_RS19575	0.24	-0.0
4,430,380	-		PFLU_RS19575	0.24	+1.6
4,430,380	-		PFLU_RS19575	0.24	-1.9
4,430,380	-		PFLU_RS19575	0.24	+0.9
4,430,380	-		PFLU_RS19575	0.24	+1.6
4,430,380	-		PFLU_RS19575	0.24	-2.6
4,430,380	-		PFLU_RS19575	0.24	+3.0
4,430,421	+		PFLU_RS19575	0.25	-0.5
4,430,421	+		PFLU_RS19575	0.25	+0.4
4,430,421	+		PFLU_RS19575	0.25	+0.1
4,430,422	-		PFLU_RS19575	0.25	+1.2
4,430,422	-		PFLU_RS19575	0.25	-1.0
4,430,569	-		PFLU_RS19575	0.27	+2.2
4,430,893	-		PFLU_RS19575	0.33	+2.1
4,431,377	+		PFLU_RS19575	0.40	-1.2
4,431,633	+		PFLU_RS19575	0.45	+1.2
4,431,633	+		PFLU_RS19575	0.45	-0.4
4,431,633	+		PFLU_RS19575	0.45	-1.2
4,431,633	+		PFLU_RS19575	0.45	-1.6
4,431,634	-		PFLU_RS19575	0.45	+1.0
4,431,634	-		PFLU_RS19575	0.45	+0.2
4,431,634	-		PFLU_RS19575	0.45	-0.7
4,431,894	+		PFLU_RS19575	0.49	+2.2
4,431,895	-		PFLU_RS19575	0.49	-1.4
4,432,029	+		PFLU_RS19575	0.51	+3.7
4,432,136	+		PFLU_RS19575	0.53	-1.9
4,432,251	+		PFLU_RS19575	0.55	-1.6
4,432,252	-		PFLU_RS19575	0.55	+0.0
4,432,347	+		PFLU_RS19575	0.56	+0.1
4,432,365	+		PFLU_RS19575	0.56	+1.8
4,432,365	+		PFLU_RS19575	0.56	-1.0
4,432,365	+		PFLU_RS19575	0.56	-1.1
4,432,365	+		PFLU_RS19575	0.56	+1.0
4,432,365	+		PFLU_RS19575	0.56	+2.8
4,432,365	+		PFLU_RS19575	0.56	+0.9
4,432,365	+		PFLU_RS19575	0.56	+0.1
4,432,365	+		PFLU_RS19575	0.56	-2.2
4,432,366	-		PFLU_RS19575	0.56	+3.2
4,432,366	-		PFLU_RS19575	0.56	-0.1
4,432,366	-		PFLU_RS19575	0.56	-1.5
4,432,366	-		PFLU_RS19575	0.56	+1.3
4,432,366	-		PFLU_RS19575	0.56	+1.5
4,432,398	-		PFLU_RS19575	0.57	+1.2
4,432,569	+		PFLU_RS19575	0.60	-1.7
4,432,569	+		PFLU_RS19575	0.60	+0.3
4,432,617	+		PFLU_RS19575	0.60	+1.7
4,432,617	+		PFLU_RS19575	0.60	-1.3
4,432,713	+		PFLU_RS19575	0.62	-1.4
4,432,713	+		PFLU_RS19575	0.62	+0.0
4,432,713	+		PFLU_RS19575	0.62	-0.6
4,432,713	+		PFLU_RS19575	0.62	+1.2
4,432,713	+		PFLU_RS19575	0.62	+2.4
4,432,713	+		PFLU_RS19575	0.62	-0.7
4,432,713	+		PFLU_RS19575	0.62	-0.7
4,432,713	+		PFLU_RS19575	0.62	+0.1
4,432,713	+		PFLU_RS19575	0.62	+0.5
4,432,713	+		PFLU_RS19575	0.62	+1.9
4,432,713	+		PFLU_RS19575	0.62	+2.1
4,432,713	+		PFLU_RS19575	0.62	+2.0
4,432,713	+		PFLU_RS19575	0.62	+1.3
4,432,713	+		PFLU_RS19575	0.62	+0.5
4,432,713	+		PFLU_RS19575	0.62	+1.8
4,432,713	+		PFLU_RS19575	0.62	+2.4
4,432,714	-		PFLU_RS19575	0.62	+0.7
4,432,714	-		PFLU_RS19575	0.62	-2.1
4,432,714	-		PFLU_RS19575	0.62	+2.8
4,432,714	-		PFLU_RS19575	0.62	+1.3
4,432,714	-		PFLU_RS19575	0.62	+2.0
4,432,714	-		PFLU_RS19575	0.62	+2.1
4,432,714	-		PFLU_RS19575	0.62	+2.8
4,432,714	-		PFLU_RS19575	0.62	+1.4
4,432,714	-		PFLU_RS19575	0.62	+2.9
4,432,714	-		PFLU_RS19575	0.62	-0.8
4,432,714	-		PFLU_RS19575	0.62	-0.6
4,432,714	-		PFLU_RS19575	0.62	+3.7
4,432,727	+		PFLU_RS19575	0.62	+1.8
4,432,728	-		PFLU_RS19575	0.62	+0.6
4,432,768	-		PFLU_RS19575	0.63	+0.8
4,432,768	-		PFLU_RS19575	0.63	+1.2
4,432,768	-		PFLU_RS19575	0.63	+0.1
4,432,799	-		PFLU_RS19575	0.63	-0.5
4,432,863	+		PFLU_RS19575	0.64	+0.4
4,432,863	+		PFLU_RS19575	0.64	+1.4
4,432,972	-		PFLU_RS19575	0.66	+1.3
4,433,265	+		PFLU_RS19575	0.71	+1.2
4,433,265	+		PFLU_RS19575	0.71	+1.7
4,433,265	+		PFLU_RS19575	0.71	-2.1
4,433,266	-		PFLU_RS19575	0.71	-0.7
4,433,266	-		PFLU_RS19575	0.71	+0.6
4,433,266	-		PFLU_RS19575	0.71	+0.4
4,433,266	-		PFLU_RS19575	0.71	+1.0
4,433,274	+		PFLU_RS19575	0.71	-0.6
4,433,274	+		PFLU_RS19575	0.71	+2.0
4,433,274	+		PFLU_RS19575	0.71	-0.7
4,433,275	-		PFLU_RS19575	0.71	+3.3
4,433,275	-		PFLU_RS19575	0.71	+1.6
4,433,275	-		PFLU_RS19575	0.71	-1.0
4,433,275	-		PFLU_RS19575	0.71	-2.2
4,433,399	+		PFLU_RS19575	0.73	+0.1
4,433,430	+		PFLU_RS19575	0.73	+1.2
4,433,430	+		PFLU_RS19575	0.73	+2.5
4,433,430	+		PFLU_RS19575	0.73	+1.9
4,433,431	-		PFLU_RS19575	0.73	+2.3
4,433,431	-		PFLU_RS19575	0.73	+1.7
4,433,472	+		PFLU_RS19575	0.74	+3.4
4,433,472	+		PFLU_RS19575	0.74	+1.1
4,433,472	+		PFLU_RS19575	0.74	+0.5
4,433,472	+		PFLU_RS19575	0.74	+1.8
4,433,472	+		PFLU_RS19575	0.74	-2.4
4,433,472	+		PFLU_RS19575	0.74	-0.5
4,433,472	+		PFLU_RS19575	0.74	-0.7
4,433,473	-		PFLU_RS19575	0.74	-3.0
4,433,473	-		PFLU_RS19575	0.74	+0.1
4,433,473	-		PFLU_RS19575	0.74	+0.5
4,433,473	-		PFLU_RS19575	0.74	+2.6
4,433,473	-		PFLU_RS19575	0.74	+2.0
4,433,562	-		PFLU_RS19575	0.76	+2.1
4,433,620	-		PFLU_RS19575	0.77	-0.1
4,433,620	-		PFLU_RS19575	0.77	+1.2
4,433,620	-		PFLU_RS19575	0.77	+1.6
4,433,640	+		PFLU_RS19575	0.77	+2.2
4,433,640	+		PFLU_RS19575	0.77	-1.2
4,433,830	+		PFLU_RS19575	0.80	+1.7
4,433,830	+		PFLU_RS19575	0.80	-1.7
4,433,831	-		PFLU_RS19575	0.80	+1.4
4,433,831	-		PFLU_RS19575	0.80	+1.9
4,433,831	-		PFLU_RS19575	0.80	-0.7
4,433,831	-		PFLU_RS19575	0.80	+1.7
4,433,871	+		PFLU_RS19575	0.81	+1.2
4,433,871	+		PFLU_RS19575	0.81	-0.6
4,433,871	+		PFLU_RS19575	0.81	+2.8
4,433,872	-		PFLU_RS19575	0.81	-1.1
4,433,872	-		PFLU_RS19575	0.81	+0.4
4,433,872	-		PFLU_RS19575	0.81	-1.2
4,433,872	-		PFLU_RS19575	0.81	+2.7
4,433,883	+		PFLU_RS19575	0.81	+0.3
4,433,884	-		PFLU_RS19575	0.81	+3.9
4,433,884	-		PFLU_RS19575	0.81	+2.3
4,434,024	+		PFLU_RS19575	0.83	+0.4
4,434,025	-		PFLU_RS19575	0.83	-1.2
4,434,191	+		PFLU_RS19575	0.86	+2.2
4,434,303	+		PFLU_RS19575	0.87	+1.8
4,434,303	+		PFLU_RS19575	0.87	-0.7
4,434,303	+		PFLU_RS19575	0.87	+2.6
4,434,303	+		PFLU_RS19575	0.87	+2.7
4,434,304	-		PFLU_RS19575	0.87	+0.5
4,434,304	-		PFLU_RS19575	0.87	-2.6
4,434,304	-		PFLU_RS19575	0.87	-3.7
4,434,304	-		PFLU_RS19575	0.87	+1.0
4,434,304	-		PFLU_RS19575	0.87	+1.8
4,434,309	+		PFLU_RS19575	0.88	+3.3
4,434,309	+		PFLU_RS19575	0.88	+3.2
4,434,309	+		PFLU_RS19575	0.88	-1.7
4,434,309	+		PFLU_RS19575	0.88	-0.4
4,434,309	+		PFLU_RS19575	0.88	-1.7
4,434,309	+		PFLU_RS19575	0.88	+2.3
4,434,309	+		PFLU_RS19575	0.88	+0.7
4,434,309	+		PFLU_RS19575	0.88	+2.5
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4,434,309	+		PFLU_RS19575	0.88	+2.5
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4,434,309	+		PFLU_RS19575	0.88	-1.9
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4,434,309	+		PFLU_RS19575	0.88	+0.7
4,434,309	+		PFLU_RS19575	0.88	+3.3
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4,434,309	+		PFLU_RS19575	0.88	+3.2
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4,434,309	+		PFLU_RS19575	0.88	+1.3
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4,434,310	-		PFLU_RS19575	0.88	+3.7
4,434,310	-		PFLU_RS19575	0.88	+1.7
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4,434,310	-		PFLU_RS19575	0.88	+2.6
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4,434,310	-		PFLU_RS19575	0.88	+3.5
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4,434,310	-		PFLU_RS19575	0.88	+1.8
4,434,310	-		PFLU_RS19575	0.88	+0.4
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4,434,310	-		PFLU_RS19575	0.88	-1.3
4,434,310	-		PFLU_RS19575	0.88	+0.1
4,434,310	-		PFLU_RS19575	0.88	+2.3
4,434,310	-		PFLU_RS19575	0.88	+2.0
4,434,310	-		PFLU_RS19575	0.88	-1.2
4,434,468	+				+0.4
4,434,468	+				+0.5
4,434,483	+				+2.2
4,434,484	-				+1.1
4,434,502	-				-0.0
4,434,538	+				+3.3
4,434,538	+				+1.0
4,434,549	+				+1.9
4,434,549	+				+2.8
4,434,549	+				+1.7
4,434,549	+				-0.7
4,434,549	+				+2.2
4,434,549	+				+2.8
4,434,549	+				+0.7
4,434,550	-				+3.0
4,434,550	-				+0.1
4,434,550	-				+1.2
4,434,550	-				+2.2
4,434,550	-				+1.1
4,434,550	-				+1.1
4,434,550	-				+2.7
4,434,550	-				-0.7
4,434,597	+				+1.6
4,434,970	-				+3.3
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4,434,970	-				+1.6
4,434,984	+				+2.2
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4,434,985	-				+2.5
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4,435,081	+				+2.1
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4,435,081	+				+1.8
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4,435,130	+				+2.2
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4,435,264	+				+0.1
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4,435,445	+				+3.2
4,435,445	+				+2.0
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4,435,445	+				+2.4
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4,435,445	+				+1.3
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4,435,446	-				-1.9
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4,435,467	+				+0.5
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4,435,468	-				-1.7
4,435,472	-				-2.1
4,435,472	-				-1.9
4,435,571	-				-2.1
4,435,588	+				-2.1
4,435,910	+		PFLU_RS19580	0.43	-2.0
4,435,911	-		PFLU_RS19580	0.43	-1.3