Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14785

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
3,306,556	+		PFLU_RS14780	0.51	-0.1
3,306,817	-		PFLU_RS14780	0.74	-1.7
3,306,847	+		PFLU_RS14780	0.76	+2.1
3,306,847	+		PFLU_RS14780	0.76	-2.5
3,306,848	-		PFLU_RS14780	0.76	-1.9
3,306,848	-		PFLU_RS14780	0.76	+0.3
3,306,848	-		PFLU_RS14780	0.76	+0.1
3,306,848	-		PFLU_RS14780	0.76	-1.6
3,306,848	-		PFLU_RS14780	0.76	-1.0
3,306,848	-		PFLU_RS14780	0.76	-0.1
3,306,913	-		PFLU_RS14780	0.82	-1.9
3,306,921	+		PFLU_RS14780	0.83	-1.1
3,306,921	+		PFLU_RS14780	0.83	-1.3
3,306,921	+		PFLU_RS14780	0.83	+1.7
3,306,922	-		PFLU_RS14780	0.83	-2.6
3,306,922	-		PFLU_RS14780	0.83	+1.7
3,306,930	+		PFLU_RS14780	0.83	-2.5
3,306,930	+		PFLU_RS14780	0.83	+2.7
3,306,931	-		PFLU_RS14780	0.83	-0.2
3,306,931	-		PFLU_RS14780	0.83	-1.8
3,306,931	-		PFLU_RS14780	0.83	-0.4
3,306,931	-		PFLU_RS14780	0.83	+1.0
3,306,934	+		PFLU_RS14780	0.84	+1.0
3,306,934	+		PFLU_RS14780	0.84	+1.5
3,306,934	+		PFLU_RS14780	0.84	-2.4
3,307,039	-				+1.0
3,307,163	+				-2.0
3,307,163	+				-0.4
3,307,163	+				-0.6
3,307,163	+				+2.6
3,307,163	+				-0.1
3,307,163	+				+0.8
3,307,164	-				+2.0
3,307,164	-				-0.2
3,307,164	-				-0.1
3,307,164	-				+0.1
3,307,164	-				-1.0
3,307,164	-				+2.5
3,307,164	-				+0.2
3,307,164	-				+1.6
3,307,164	-				-1.8
3,307,164	-				+1.8
3,307,638	+		PFLU_RS14785	0.47	+0.8
3,307,659	+		PFLU_RS14785	0.48	-1.5
3,307,704	+		PFLU_RS14785	0.53	+1.2
3,307,705	-		PFLU_RS14785	0.53	-2.2
3,307,727	-		PFLU_RS14785	0.55	+2.5
3,307,740	+		PFLU_RS14785	0.56	+0.3
3,307,740	+		PFLU_RS14785	0.56	+1.5
3,307,741	-		PFLU_RS14785	0.56	-1.5
3,307,741	-		PFLU_RS14785	0.56	-1.1
3,307,741	-		PFLU_RS14785	0.56	+0.2
3,307,741	-		PFLU_RS14785	0.56	-0.7
3,307,741	-		PFLU_RS14785	0.56	+1.8
3,307,741	-		PFLU_RS14785	0.56	+1.4
3,307,751	+		PFLU_RS14785	0.57	+0.6
3,307,752	-		PFLU_RS14785	0.57	-0.7
3,307,764	+		PFLU_RS14785	0.58	+0.7
3,307,765	-		PFLU_RS14785	0.58	-0.8
3,307,765	-		PFLU_RS14785	0.58	-1.5
3,307,765	-		PFLU_RS14785	0.58	+0.2
3,307,775	+		PFLU_RS14785	0.59	-2.1
3,307,775	+		PFLU_RS14785	0.59	-1.9
3,307,776	-		PFLU_RS14785	0.59	-1.7
3,307,776	-		PFLU_RS14785	0.59	+1.2
3,307,776	-		PFLU_RS14785	0.59	+2.2
3,307,776	-		PFLU_RS14785	0.59	-1.8
3,307,817	+		PFLU_RS14785	0.63	-1.8
3,307,888	+		PFLU_RS14785	0.69	+0.3
3,307,888	+		PFLU_RS14785	0.69	+1.8
3,307,893	+		PFLU_RS14785	0.70	-1.4
3,307,893	+		PFLU_RS14785	0.70	+1.7
3,307,894	-		PFLU_RS14785	0.70	+3.7
3,307,920	+		PFLU_RS14785	0.72	-2.1
3,307,921	-		PFLU_RS14785	0.72	-0.6
3,308,040	+		PFLU_RS14785	0.83	-1.9
3,308,040	+		PFLU_RS14785	0.83	-0.9
3,308,040	+		PFLU_RS14785	0.83	-0.1
3,308,040	+		PFLU_RS14785	0.83	-0.5
3,308,040	+		PFLU_RS14785	0.83	+0.3
3,308,040	+		PFLU_RS14785	0.83	-1.6
3,308,040	+		PFLU_RS14785	0.83	+0.9
3,308,040	+		PFLU_RS14785	0.83	-1.9
3,308,041	-		PFLU_RS14785	0.83	+0.1
3,308,041	-		PFLU_RS14785	0.83	-1.6
3,308,041	-		PFLU_RS14785	0.83	+4.3
3,308,041	-		PFLU_RS14785	0.83	-2.3
3,308,041	-		PFLU_RS14785	0.83	-2.5
3,308,041	-		PFLU_RS14785	0.83	+2.7
3,308,041	-		PFLU_RS14785	0.83	+1.4
3,308,041	-		PFLU_RS14785	0.83	-2.2
3,308,041	-		PFLU_RS14785	0.83	-1.1
3,308,041	-		PFLU_RS14785	0.83	+0.3
3,308,137	+				+0.8
3,308,138	-				-0.2
3,308,138	-				-0.4
3,308,138	-				-3.4
3,308,186	+				-0.0
3,308,186	+				-0.3
3,308,186	+				-2.4
3,308,186	+				-0.1
3,308,186	+				+1.2
3,308,186	+				+0.3
3,308,186	+				+0.9
3,308,186	+				-0.4
3,308,186	+				+2.0
3,308,186	+				+2.2
3,308,186	+				+1.8
3,308,186	+				-2.0
3,308,186	+				+0.3
3,308,186	+				-0.6
3,308,187	-				+0.5
3,308,187	-				-1.0
3,308,187	-				+0.8
3,308,187	-				+2.1
3,308,187	-				-3.2
3,308,187	-				-0.1
3,308,187	-				+2.7
3,308,187	-				+1.3
3,308,187	-				+1.3
3,308,187	-				+0.2
3,308,187	-				-1.2
3,308,187	-				-1.2
3,308,231	+				+0.8
3,308,232	-				+2.1
3,308,245	+				-1.5
3,308,246	-				+1.2
3,308,248	+				+0.4
3,308,248	+				-0.8
3,308,249	-				-3.0
3,308,255	+				+1.2
3,308,291	+				-2.0
3,308,312	+				+1.1
3,308,312	+				+1.5
3,308,312	+				-0.8
3,308,312	+				+0.5
3,308,346	+				+1.6
3,308,346	+				-1.5
3,308,346	+				-1.2
3,308,347	-				-1.2
3,308,347	-				-0.2
3,308,347	-				-2.6
3,308,347	-				-3.0
3,308,347	-				+2.9
3,308,347	-				+1.0
3,308,401	+				+0.3
3,308,401	+				-0.6
3,308,455	+		PFLU_RS14790	0.12	-0.8
3,308,469	+		PFLU_RS14790	0.14	-1.5
3,308,469	+		PFLU_RS14790	0.14	+0.2
3,308,469	+		PFLU_RS14790	0.14	+0.3
3,308,470	-		PFLU_RS14790	0.14	+1.1
3,308,470	-		PFLU_RS14790	0.14	+1.3
3,308,470	-		PFLU_RS14790	0.14	+0.5
3,308,470	-		PFLU_RS14790	0.14	-0.0
3,308,554	+		PFLU_RS14790	0.26	-0.0
3,308,610	+		PFLU_RS14790	0.34	+1.3
3,308,610	+		PFLU_RS14790	0.34	-0.8
3,308,610	+		PFLU_RS14790	0.34	+1.4
3,308,610	+		PFLU_RS14790	0.34	-1.5
3,308,610	+		PFLU_RS14790	0.34	-1.5
3,308,610	+		PFLU_RS14790	0.34	-1.7
3,308,611	-		PFLU_RS14790	0.34	+0.1
3,308,611	-		PFLU_RS14790	0.34	+0.6
3,308,611	-		PFLU_RS14790	0.34	+2.0
3,308,611	-		PFLU_RS14790	0.34	+1.0
3,308,667	+		PFLU_RS14790	0.42	-0.7
3,308,668	-		PFLU_RS14790	0.42	+2.1
3,308,668	-		PFLU_RS14790	0.42	+3.2
3,308,668	-		PFLU_RS14790	0.42	+1.9
3,308,854	-		PFLU_RS14790	0.68	+0.7
3,308,854	-		PFLU_RS14790	0.68	+1.9
3,308,854	-		PFLU_RS14790	0.68	+1.2
3,308,966	+		PFLU_RS14790	0.84	+1.6
3,309,052	+				+1.6
3,309,052	+				+1.2
3,309,052	+				-2.6
3,309,052	+				-1.0
3,309,053	-				-1.5
3,309,053	-				+1.3
3,309,212	+				+2.6
3,309,215	+				+2.5
3,309,216	-				-1.0