Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13455

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
3,043,636	+				-2.0
3,043,636	+				-2.0
3,043,636	+				+0.7
3,043,636	+				+1.4
3,043,637	-				-1.7
3,043,637	-				-0.8
3,043,752	-				+2.6
3,043,879	+		PFLU_RS13450	0.13	-0.7
3,043,880	-		PFLU_RS13450	0.13	+1.0
3,044,061	+		PFLU_RS13450	0.37	-0.1
3,044,062	-		PFLU_RS13450	0.37	+0.3
3,044,062	-		PFLU_RS13450	0.37	+0.6
3,044,062	-		PFLU_RS13450	0.37	-2.0
3,044,242	+		PFLU_RS13450	0.61	+2.0
3,044,242	+		PFLU_RS13450	0.61	+0.5
3,044,242	+		PFLU_RS13450	0.61	+0.4
3,044,242	+		PFLU_RS13450	0.61	-1.1
3,044,243	-		PFLU_RS13450	0.62	-1.3
3,044,243	-		PFLU_RS13450	0.62	-1.3
3,044,243	-		PFLU_RS13450	0.62	+1.6
3,044,251	+		PFLU_RS13450	0.63	-2.6
3,044,252	-		PFLU_RS13450	0.63	+0.4
3,044,252	-		PFLU_RS13450	0.63	+2.1
3,044,348	-		PFLU_RS13450	0.76	+1.5
3,044,348	-		PFLU_RS13450	0.76	+1.7
3,044,349	+		PFLU_RS13450	0.76	-1.2
3,044,349	+		PFLU_RS13450	0.76	-0.1
3,044,349	+		PFLU_RS13450	0.76	+0.5
3,044,349	+		PFLU_RS13450	0.76	+2.5
3,044,349	+		PFLU_RS13450	0.76	+0.5
3,044,349	+		PFLU_RS13450	0.76	+1.2
3,044,349	+		PFLU_RS13450	0.76	+1.4
3,044,349	+		PFLU_RS13450	0.76	-1.4
3,044,350	-		PFLU_RS13450	0.76	+0.8
3,044,350	-		PFLU_RS13450	0.76	+0.5
3,044,350	-		PFLU_RS13450	0.76	-1.9
3,044,350	-		PFLU_RS13450	0.76	+2.5
3,044,350	-		PFLU_RS13450	0.76	+1.0
3,044,350	-		PFLU_RS13450	0.76	+2.3
3,044,350	-		PFLU_RS13450	0.76	+1.5
3,044,350	-		PFLU_RS13450	0.76	-3.7
3,044,350	-		PFLU_RS13450	0.76	-2.4
3,044,350	-		PFLU_RS13450	0.76	+1.2
3,044,353	+		PFLU_RS13450	0.76	+0.6
3,044,353	+		PFLU_RS13450	0.76	-0.4
3,044,353	+		PFLU_RS13450	0.76	+0.0
3,044,353	+		PFLU_RS13450	0.76	-0.1
3,044,353	+		PFLU_RS13450	0.76	+0.3
3,044,353	+		PFLU_RS13450	0.76	+1.0
3,044,353	+		PFLU_RS13450	0.76	+1.1
3,044,353	+		PFLU_RS13450	0.76	+2.4
3,044,354	-		PFLU_RS13450	0.76	+0.4
3,044,354	-		PFLU_RS13450	0.76	-1.3
3,044,354	-		PFLU_RS13450	0.76	-1.2
3,044,354	-		PFLU_RS13450	0.76	+0.3
3,044,354	-		PFLU_RS13450	0.76	-0.7
3,044,354	-		PFLU_RS13450	0.76	-3.0
3,044,354	-		PFLU_RS13450	0.76	+2.5
3,044,354	-		PFLU_RS13450	0.76	+0.3
3,044,354	-		PFLU_RS13450	0.76	+0.1
3,044,479	-				-0.2
3,044,488	+				-0.3
3,044,488	+				-1.3
3,044,489	-				+2.8
3,044,489	-				+1.7
3,044,489	-				+2.1
3,044,489	-				-2.1
3,044,489	-				-2.5
3,044,489	-				-1.3
3,044,577	-				+2.0
3,044,701	+				-0.6
3,044,701	+				-0.2
3,044,701	+				-0.0
3,044,701	+				-0.6
3,044,701	+				+1.9
3,044,702	-				+0.2
3,044,702	-				+3.5
3,044,702	-				+2.2
3,044,702	-				-3.1
3,044,702	-				+0.1
3,044,881	+		PFLU_RS13455	0.18	+1.1
3,044,881	+		PFLU_RS13455	0.18	-0.6
3,044,930	-		PFLU_RS13455	0.21	-0.7
3,044,956	+		PFLU_RS13455	0.23	-2.9
3,044,974	+		PFLU_RS13455	0.24	-0.0
3,044,975	-		PFLU_RS13455	0.24	-1.9
3,044,975	-		PFLU_RS13455	0.24	+0.9
3,045,178	+		PFLU_RS13455	0.39	+2.3
3,045,178	+		PFLU_RS13455	0.39	-0.7
3,045,178	+		PFLU_RS13455	0.39	-1.1
3,045,179	-		PFLU_RS13455	0.39	+2.2
3,045,179	-		PFLU_RS13455	0.39	+2.5
3,045,179	-		PFLU_RS13455	0.39	+0.9
3,045,190	+		PFLU_RS13455	0.40	+1.3
3,045,190	+		PFLU_RS13455	0.40	-1.5
3,045,191	-		PFLU_RS13455	0.40	-0.3
3,045,191	-		PFLU_RS13455	0.40	-1.4
3,045,414	+		PFLU_RS13455	0.56	+0.2
3,045,414	+		PFLU_RS13455	0.56	+0.1
3,045,414	+		PFLU_RS13455	0.56	+1.1
3,045,415	-		PFLU_RS13455	0.56	+1.7
3,045,415	-		PFLU_RS13455	0.56	+1.3
3,045,415	-		PFLU_RS13455	0.56	+1.0
3,045,430	+		PFLU_RS13455	0.57	+2.1
3,045,430	+		PFLU_RS13455	0.57	-2.7
3,045,430	+		PFLU_RS13455	0.57	-0.4
3,045,430	+		PFLU_RS13455	0.57	-2.1
3,045,430	+		PFLU_RS13455	0.57	-1.3
3,045,430	+		PFLU_RS13455	0.57	-0.9
3,045,430	+		PFLU_RS13455	0.57	+1.8
3,045,430	+		PFLU_RS13455	0.57	-1.2
3,045,430	+		PFLU_RS13455	0.57	+3.2
3,045,430	+		PFLU_RS13455	0.57	+2.6
3,045,430	+		PFLU_RS13455	0.57	-1.3
3,045,430	+		PFLU_RS13455	0.57	+2.0
3,045,430	+		PFLU_RS13455	0.57	+1.6
3,045,431	-		PFLU_RS13455	0.57	-0.6
3,045,431	-		PFLU_RS13455	0.57	+0.9
3,045,431	-		PFLU_RS13455	0.57	+2.9
3,045,431	-		PFLU_RS13455	0.57	+2.6
3,045,431	-		PFLU_RS13455	0.57	-0.1
3,045,431	-		PFLU_RS13455	0.57	-2.4
3,045,431	-		PFLU_RS13455	0.57	-0.8
3,045,431	-		PFLU_RS13455	0.57	+2.7
3,045,431	-		PFLU_RS13455	0.57	-2.1
3,045,431	-		PFLU_RS13455	0.57	-1.5
3,045,431	-		PFLU_RS13455	0.57	+1.9
3,045,431	-		PFLU_RS13455	0.57	+0.9
3,045,431	-		PFLU_RS13455	0.57	+1.9
3,045,431	-		PFLU_RS13455	0.57	+2.2
3,045,431	-		PFLU_RS13455	0.57	-0.2
3,045,431	-		PFLU_RS13455	0.57	-0.1
3,045,431	-		PFLU_RS13455	0.57	-0.5
3,045,431	-		PFLU_RS13455	0.57	+0.9
3,045,431	-		PFLU_RS13455	0.57	-0.1
3,045,562	+		PFLU_RS13455	0.66	-1.6
3,045,562	+		PFLU_RS13455	0.66	+1.4
3,045,562	+		PFLU_RS13455	0.66	+0.9
3,045,562	+		PFLU_RS13455	0.66	+0.5
3,045,562	+		PFLU_RS13455	0.66	-0.8
3,045,563	-		PFLU_RS13455	0.66	+0.5
3,045,563	-		PFLU_RS13455	0.66	-2.3
3,045,563	-		PFLU_RS13455	0.66	+2.4
3,045,563	-		PFLU_RS13455	0.66	-2.2
3,045,684	+		PFLU_RS13455	0.75	+0.1
3,045,684	+		PFLU_RS13455	0.75	+1.6
3,045,898	+		PFLU_RS13455	0.90	-2.1
3,045,898	+		PFLU_RS13455	0.90	+0.7
3,045,898	+		PFLU_RS13455	0.90	+1.2
3,045,899	-		PFLU_RS13455	0.90	+2.1
3,045,899	-		PFLU_RS13455	0.90	-0.5
3,045,899	-		PFLU_RS13455	0.90	+1.2
3,045,899	-		PFLU_RS13455	0.90	-2.4
3,045,901	+				+0.6
3,045,901	+				-1.9
3,045,901	+				-1.6
3,045,902	-				-2.8
3,045,902	-				+0.9
3,045,902	-				+1.9
3,045,934	+				-0.9
3,045,935	-				+1.1
3,045,949	+				+1.0
3,045,950	-				-1.4
3,046,061	-				+0.2
3,046,067	+				+1.3
3,046,067	+				+0.1
3,046,067	+				-2.2
3,046,068	-				+1.8
3,046,068	-				-2.4
3,046,068	-				-0.6
3,046,068	-				+4.3
3,046,077	+				-0.4
3,046,078	-				+1.8
3,046,078	-				+1.6
3,046,151	+				+1.0
3,046,151	+				+0.3
3,046,151	+				-1.0
3,046,151	+				+2.8
3,046,151	+				-3.4
3,046,151	+				+1.4
3,046,151	+				+0.5
3,046,152	-				-0.8
3,046,152	-				+1.5
3,046,152	-				+0.8
3,046,152	-				+0.1
3,046,152	-				+0.1
3,046,152	-				+0.1
3,046,152	-				-0.1
3,046,152	-				-2.3
3,046,152	-				+0.8
3,046,152	-				+2.9
3,046,152	-				-1.6
3,046,152	-				-2.1
3,046,370	+		PFLU_RS13460	0.19	-2.5
3,046,370	+		PFLU_RS13460	0.19	-1.7
3,046,370	+		PFLU_RS13460	0.19	-0.7
3,046,370	+		PFLU_RS13460	0.19	-1.8
3,046,370	+		PFLU_RS13460	0.19	-1.2
3,046,370	+		PFLU_RS13460	0.19	-1.4
3,046,370	+		PFLU_RS13460	0.19	-1.1
3,046,371	-		PFLU_RS13460	0.19	-1.6
3,046,371	-		PFLU_RS13460	0.19	-1.2
3,046,371	-		PFLU_RS13460	0.19	+2.9
3,046,371	-		PFLU_RS13460	0.19	+2.5
3,046,371	-		PFLU_RS13460	0.19	-1.6
3,046,371	-		PFLU_RS13460	0.19	+0.5
3,046,371	-		PFLU_RS13460	0.19	-2.3
3,046,371	-		PFLU_RS13460	0.19	+3.5
3,046,492	+		PFLU_RS13460	0.27	+1.8
3,046,522	+		PFLU_RS13460	0.29	+0.4
3,046,565	+		PFLU_RS13460	0.32	-2.6
3,046,565	+		PFLU_RS13460	0.32	+2.3
3,046,565	+		PFLU_RS13460	0.32	-1.1
3,046,565	+		PFLU_RS13460	0.32	+0.9
3,046,565	+		PFLU_RS13460	0.32	+0.6
3,046,566	-		PFLU_RS13460	0.32	+0.1
3,046,566	-		PFLU_RS13460	0.32	-0.9
3,046,790	+		PFLU_RS13460	0.48	+1.3
3,046,791	-		PFLU_RS13460	0.48	-2.1
3,046,791	-		PFLU_RS13460	0.48	-0.7
3,046,893	-		PFLU_RS13460	0.56	+0.9
3,046,893	-		PFLU_RS13460	0.56	+1.0
3,046,893	-		PFLU_RS13460	0.56	-0.2
3,046,989	-		PFLU_RS13460	0.62	+0.8