Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09890

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
2,178,615	+		PFLU_RS09885	0.75	-0.7
2,178,615	+		PFLU_RS09885	0.75	-1.5
2,178,616	-		PFLU_RS09885	0.75	-0.8
2,178,622	+		PFLU_RS09885	0.75	+1.0
2,178,622	+		PFLU_RS09885	0.75	-1.3
2,178,622	+		PFLU_RS09885	0.75	-0.9
2,178,719	+		PFLU_RS09885	0.82	-1.6
2,178,721	+		PFLU_RS09885	0.82	-1.6
2,178,722	-		PFLU_RS09885	0.83	-2.3
2,178,723	+		PFLU_RS09885	0.83	-2.0
2,178,723	+		PFLU_RS09885	0.83	-2.0
2,178,723	+		PFLU_RS09885	0.83	-0.5
2,178,723	+		PFLU_RS09885	0.83	-1.6
2,178,723	+		PFLU_RS09885	0.83	-1.2
2,178,723	+		PFLU_RS09885	0.83	-2.3
2,178,723	+		PFLU_RS09885	0.83	-2.1
2,178,724	-		PFLU_RS09885	0.83	+1.3
2,178,724	-		PFLU_RS09885	0.83	-0.2
2,178,724	-		PFLU_RS09885	0.83	-2.9
2,178,724	-		PFLU_RS09885	0.83	-2.3
2,178,767	+		PFLU_RS09885	0.86	-2.6
2,178,767	+		PFLU_RS09885	0.86	+0.2
2,178,767	+		PFLU_RS09885	0.86	-0.6
2,178,768	-		PFLU_RS09885	0.86	+2.4
2,178,769	+		PFLU_RS09885	0.86	-1.9
2,178,770	-		PFLU_RS09885	0.86	+1.2
2,178,831	+				-2.1
2,178,834	+				-1.6
2,178,834	+				-1.3
2,178,835	-				+2.8
2,178,835	-				-1.1
2,178,835	-				-1.5
2,178,835	-				-1.4
2,178,835	-				-1.2
2,178,835	-				-0.5
2,178,856	-				-0.2
2,178,860	-				+2.1
2,178,879	+				-0.1
2,178,880	-				-1.1
2,178,880	-				-0.6
2,178,886	+				-1.1
2,178,886	+				-2.3
2,178,886	+				+1.1
2,178,886	+				-1.4
2,178,887	-				+1.8
2,178,905	+				-3.2
2,178,912	+				-2.2
2,178,936	+				-0.2
2,178,974	+				+1.7
2,178,974	+				-0.1
2,178,974	+				+1.7
2,178,990	+				-2.6
2,178,991	-				-1.8
2,179,145	-		PFLU_RS30605	0.35	-1.1
2,179,152	+		PFLU_RS30605	0.36	+2.1
2,179,152	+		PFLU_RS30605	0.36	+2.7
2,179,152	+		PFLU_RS30605	0.36	-0.4
2,179,152	+		PFLU_RS30605	0.36	-0.9
2,179,153	-		PFLU_RS30605	0.37	-2.4
2,179,153	-		PFLU_RS30605	0.37	-2.8
2,179,154	+		PFLU_RS30605	0.37	-2.0
2,179,154	+		PFLU_RS30605	0.37	-0.4
2,179,154	+		PFLU_RS30605	0.37	+0.2
2,179,154	+		PFLU_RS30605	0.37	-1.1
2,179,154	+		PFLU_RS30605	0.37	-0.6
2,179,154	+		PFLU_RS30605	0.37	+0.0
2,179,154	+		PFLU_RS30605	0.37	+3.1
2,179,154	+		PFLU_RS30605	0.37	-0.2
2,179,154	+		PFLU_RS30605	0.37	-2.3
2,179,155	-		PFLU_RS30605	0.37	+1.1
2,179,155	-		PFLU_RS30605	0.37	-2.3
2,179,155	-		PFLU_RS30605	0.37	-2.4
2,179,155	-		PFLU_RS30605	0.37	+1.3
2,179,155	-		PFLU_RS30605	0.37	+0.3
2,179,155	-		PFLU_RS30605	0.37	+1.6
2,179,155	-		PFLU_RS30605	0.37	-2.2
2,179,155	-		PFLU_RS30605	0.37	-1.7
2,179,155	-		PFLU_RS30605	0.37	+1.4
2,179,159	+		PFLU_RS30605	0.38	-1.3
2,179,159	+		PFLU_RS30605	0.38	+2.7
2,179,160	-		PFLU_RS30605	0.38	-0.6
2,179,160	-		PFLU_RS30605	0.38	-1.7
2,179,163	+		PFLU_RS30605	0.39	-2.7
2,179,163	+		PFLU_RS30605	0.39	+0.4
2,179,221	+		PFLU_RS30605	0.52	+3.3
2,179,222	-		PFLU_RS30605	0.52	-0.7
2,179,246	+		PFLU_RS30605	0.58	+0.8
2,179,247	-		PFLU_RS30605	0.58	+3.2
2,179,247	-		PFLU_RS30605	0.58	+0.8
2,179,305	+		PFLU_RS30605	0.71	-1.6
2,179,305	+		PFLU_RS30605	0.71	+1.4
2,179,318	+		PFLU_RS30605	0.74	+0.6
2,179,318	+		PFLU_RS30605	0.74	-0.8
2,179,348	+		PFLU_RS30605	0.81	+0.5
2,179,400	-				+2.9
2,179,424	+				+0.7
2,179,428	+				+2.5
2,179,429	-				+3.1
2,179,429	-				+2.6
2,179,517	-				+2.1
2,179,532	-				-2.5
2,179,556	+				-2.0
2,179,557	-				-2.1
2,179,557	-				+0.5
2,179,557	-				+1.4
2,179,561	+				-3.0
2,179,570	+				-0.9
2,179,570	+				-0.1
2,179,571	-				+0.0
2,179,571	-				-0.7
2,179,574	+				-2.0
2,179,575	-				-1.2
2,179,575	-				-0.6
2,179,594	-				+3.2
2,179,618	+				-0.2
2,179,619	-				+0.5
2,179,627	+				-2.1
2,179,679	+				+1.8
2,179,679	+				+1.1
2,179,679	+				-0.8
2,179,679	+				-0.4
2,179,679	+				-0.4
2,179,802	+		PFLU_RS09890	0.19	-0.2
2,179,802	+		PFLU_RS09890	0.19	+0.3
2,179,802	+		PFLU_RS09890	0.19	-0.3
2,179,802	+		PFLU_RS09890	0.19	-2.5
2,179,803	-		PFLU_RS09890	0.19	-0.1
2,179,814	-		PFLU_RS09890	0.20	-0.7
2,179,901	+		PFLU_RS09890	0.29	-1.6
2,179,902	-		PFLU_RS09890	0.29	+0.6
2,179,910	+		PFLU_RS09890	0.30	+1.3
2,179,980	-		PFLU_RS09890	0.36	+1.5
2,180,036	+		PFLU_RS09890	0.42	+1.6
2,180,037	-		PFLU_RS09890	0.42	-0.7
2,180,037	-		PFLU_RS09890	0.42	-2.4
2,180,039	+		PFLU_RS09890	0.42	-1.5
2,180,065	+		PFLU_RS09890	0.44	+0.9
2,180,076	-		PFLU_RS09890	0.46	+0.7
2,180,156	+		PFLU_RS09890	0.53	-2.9
2,180,157	-		PFLU_RS09890	0.53	-0.9
2,180,157	-		PFLU_RS09890	0.53	+1.7
2,180,157	-		PFLU_RS09890	0.53	+0.2
2,180,157	-		PFLU_RS09890	0.53	-1.0
2,180,157	-		PFLU_RS09890	0.53	-1.2
2,180,157	-		PFLU_RS09890	0.53	+0.6
2,180,161	-		PFLU_RS09890	0.54	+0.5
2,180,206	+		PFLU_RS09890	0.58	-1.2
2,180,265	+		PFLU_RS09890	0.64	-1.2
2,180,265	+		PFLU_RS09890	0.64	+0.8
2,180,265	+		PFLU_RS09890	0.64	-1.5
2,180,287	+		PFLU_RS09890	0.66	-2.7
2,180,287	+		PFLU_RS09890	0.66	+0.0
2,180,320	+		PFLU_RS09890	0.69	-1.8
2,180,321	-		PFLU_RS09890	0.69	-0.8
2,180,324	+		PFLU_RS09890	0.69	-0.6
2,180,324	+		PFLU_RS09890	0.69	-0.4
2,180,324	+		PFLU_RS09890	0.69	+0.6
2,180,324	+		PFLU_RS09890	0.69	+0.3
2,180,325	-		PFLU_RS09890	0.69	-1.8
2,180,325	-		PFLU_RS09890	0.69	-1.3
2,180,325	-		PFLU_RS09890	0.69	+0.6
2,180,411	+		PFLU_RS09890	0.78	-1.2
2,180,491	+		PFLU_RS09890	0.85	-2.6
2,180,618	+				-0.9
2,180,632	-				-0.3
2,180,632	-				-0.4
2,180,640	+				-0.8
2,180,650	+				+0.5
2,180,731	+				-0.5
2,180,731	+				-0.8
2,180,731	+				-1.2
2,180,731	+				+1.0
2,180,731	+				+1.0
2,180,732	-				-0.7
2,180,732	-				-0.4
2,180,736	-				+1.0
2,180,740	+				-1.2
2,180,740	+				+2.0
2,180,741	-				-1.9
2,180,840	-		PFLU_RS09895	0.13	+5.0
2,180,840	-		PFLU_RS09895	0.13	-0.4
2,180,840	-		PFLU_RS09895	0.13	-0.5
2,180,840	-		PFLU_RS09895	0.13	+0.7
2,180,898	-		PFLU_RS09895	0.17	+0.7
2,180,921	+		PFLU_RS09895	0.19	-0.4
2,180,921	+		PFLU_RS09895	0.19	-3.6
2,180,922	-		PFLU_RS09895	0.19	-1.6
2,180,922	-		PFLU_RS09895	0.19	-1.8
2,180,922	-		PFLU_RS09895	0.19	-2.7
2,180,984	+		PFLU_RS09895	0.23	-1.8
2,181,021	+		PFLU_RS09895	0.26	-1.4
2,181,021	+		PFLU_RS09895	0.26	+0.6
2,181,021	+		PFLU_RS09895	0.26	+0.6
2,181,021	+		PFLU_RS09895	0.26	+0.7
2,181,086	+		PFLU_RS09895	0.31	+1.6
2,181,086	+		PFLU_RS09895	0.31	-1.4
2,181,086	+		PFLU_RS09895	0.31	+0.6
2,181,086	+		PFLU_RS09895	0.31	+2.0
2,181,086	+		PFLU_RS09895	0.31	+0.3
2,181,086	+		PFLU_RS09895	0.31	+1.0
2,181,087	-		PFLU_RS09895	0.31	+0.2
2,181,087	-		PFLU_RS09895	0.31	-2.2
2,181,093	+		PFLU_RS09895	0.31	-0.8
2,181,093	+		PFLU_RS09895	0.31	-1.6
2,181,093	+		PFLU_RS09895	0.31	+0.3
2,181,093	+		PFLU_RS09895	0.31	+0.4
2,181,094	-		PFLU_RS09895	0.31	-1.2
2,181,122	+		PFLU_RS09895	0.33	-1.1
2,181,122	+		PFLU_RS09895	0.33	+0.1
2,181,122	+		PFLU_RS09895	0.33	+1.7
2,181,122	+		PFLU_RS09895	0.33	-1.6
2,181,122	+		PFLU_RS09895	0.33	+1.0
2,181,122	+		PFLU_RS09895	0.33	-2.6
2,181,122	+		PFLU_RS09895	0.33	-2.0
2,181,122	+		PFLU_RS09895	0.33	-1.1
2,181,122	+		PFLU_RS09895	0.33	-1.3
2,181,122	+		PFLU_RS09895	0.33	-0.3
2,181,122	+		PFLU_RS09895	0.33	-1.4
2,181,122	+		PFLU_RS09895	0.33	+0.8
2,181,122	+		PFLU_RS09895	0.33	-0.1
2,181,123	-		PFLU_RS09895	0.33	-2.2
2,181,123	-		PFLU_RS09895	0.33	-1.6
2,181,123	-		PFLU_RS09895	0.33	-0.2
2,181,163	+		PFLU_RS09895	0.36	-2.2
2,181,187	+		PFLU_RS09895	0.38	-0.9
2,181,188	-		PFLU_RS09895	0.38	+1.2
2,181,210	+		PFLU_RS09895	0.39	-2.0
2,181,210	+		PFLU_RS09895	0.39	-0.0
2,181,210	+		PFLU_RS09895	0.39	+0.1
2,181,210	+		PFLU_RS09895	0.39	+1.8
2,181,211	-		PFLU_RS09895	0.39	+0.3
2,181,211	-		PFLU_RS09895	0.39	+0.9
2,181,250	+		PFLU_RS09895	0.42	+1.9
2,181,250	+		PFLU_RS09895	0.42	-0.5
2,181,250	+		PFLU_RS09895	0.42	+2.0
2,181,250	+		PFLU_RS09895	0.42	+0.8
2,181,250	+		PFLU_RS09895	0.42	-2.3
2,181,251	-		PFLU_RS09895	0.42	-2.2
2,181,251	-		PFLU_RS09895	0.42	-1.7
2,181,251	-		PFLU_RS09895	0.42	-1.5
2,181,317	+		PFLU_RS09895	0.47	+0.8
2,181,317	+		PFLU_RS09895	0.47	-1.7
2,181,317	+		PFLU_RS09895	0.47	+0.1
2,181,317	+		PFLU_RS09895	0.47	+0.6
2,181,373	+		PFLU_RS09895	0.51	+2.3
2,181,373	+		PFLU_RS09895	0.51	+1.7
2,181,373	+		PFLU_RS09895	0.51	-2.3
2,181,373	+		PFLU_RS09895	0.51	-1.9
2,181,373	+		PFLU_RS09895	0.51	+1.6
2,181,373	+		PFLU_RS09895	0.51	+1.6
2,181,373	+		PFLU_RS09895	0.51	-0.6
2,181,373	+		PFLU_RS09895	0.51	+3.6
2,181,374	-		PFLU_RS09895	0.51	-1.5
2,181,374	-		PFLU_RS09895	0.51	-1.8
2,181,374	-		PFLU_RS09895	0.51	+2.0
2,181,410	-		PFLU_RS09895	0.53	+2.0
2,181,410	-		PFLU_RS09895	0.53	-2.6
2,181,522	+		PFLU_RS09895	0.61	+1.2
2,181,522	+		PFLU_RS09895	0.61	+0.6
2,181,522	+		PFLU_RS09895	0.61	-1.7
2,181,522	+		PFLU_RS09895	0.61	+1.9
2,181,523	-		PFLU_RS09895	0.61	-1.4
2,181,523	-		PFLU_RS09895	0.61	-0.1
2,181,523	-		PFLU_RS09895	0.61	-1.1
2,181,553	+		PFLU_RS09895	0.64	+0.1
2,181,553	+		PFLU_RS09895	0.64	-0.2
2,181,568	+		PFLU_RS09895	0.65	+0.2
2,181,568	+		PFLU_RS09895	0.65	-0.6