Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08715

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
1,936,450	-		PFLU_RS08710	0.52	+3.3
1,936,458	+		PFLU_RS08710	0.52	-0.9
1,936,459	-		PFLU_RS08710	0.52	+0.9
1,936,459	-		PFLU_RS08710	0.52	+0.1
1,936,459	-		PFLU_RS08710	0.52	-2.5
1,936,494	+		PFLU_RS08710	0.54	+1.0
1,936,494	+		PFLU_RS08710	0.54	-1.7
1,936,495	-		PFLU_RS08710	0.54	+2.6
1,936,543	+		PFLU_RS08710	0.56	-1.7
1,936,543	+		PFLU_RS08710	0.56	+0.8
1,936,543	+		PFLU_RS08710	0.56	-2.2
1,936,614	+		PFLU_RS08710	0.59	+0.2
1,936,614	+		PFLU_RS08710	0.59	-1.4
1,936,614	+		PFLU_RS08710	0.59	+1.1
1,936,614	+		PFLU_RS08710	0.59	+0.8
1,936,614	+		PFLU_RS08710	0.59	-0.3
1,936,614	+		PFLU_RS08710	0.59	+3.8
1,936,614	+		PFLU_RS08710	0.59	+2.2
1,936,614	+		PFLU_RS08710	0.59	-0.2
1,936,614	+		PFLU_RS08710	0.59	-1.8
1,936,614	+		PFLU_RS08710	0.59	+1.8
1,936,614	+		PFLU_RS08710	0.59	+1.7
1,936,614	+		PFLU_RS08710	0.59	+2.3
1,936,614	+		PFLU_RS08710	0.59	-0.2
1,936,615	-		PFLU_RS08710	0.60	-1.4
1,936,615	-		PFLU_RS08710	0.60	-2.1
1,936,615	-		PFLU_RS08710	0.60	+0.3
1,936,615	-		PFLU_RS08710	0.60	+1.3
1,936,615	-		PFLU_RS08710	0.60	+1.8
1,936,615	-		PFLU_RS08710	0.60	-1.3
1,936,615	-		PFLU_RS08710	0.60	+2.1
1,936,615	-		PFLU_RS08710	0.60	-0.5
1,936,615	-		PFLU_RS08710	0.60	+2.2
1,936,615	-		PFLU_RS08710	0.60	+2.2
1,936,615	-		PFLU_RS08710	0.60	+3.3
1,936,615	-		PFLU_RS08710	0.60	+1.4
1,936,615	-		PFLU_RS08710	0.60	+2.8
1,936,615	-		PFLU_RS08710	0.60	+0.5
1,936,615	-		PFLU_RS08710	0.60	+0.0
1,936,618	+		PFLU_RS08710	0.60	+1.3
1,936,618	+		PFLU_RS08710	0.60	-0.6
1,936,618	+		PFLU_RS08710	0.60	-0.2
1,936,619	-		PFLU_RS08710	0.60	+1.5
1,936,627	+		PFLU_RS08710	0.60	-0.8
1,936,628	-		PFLU_RS08710	0.60	-0.9
1,936,725	+		PFLU_RS08710	0.65	+1.3
1,936,725	+		PFLU_RS08710	0.65	+1.8
1,936,725	+		PFLU_RS08710	0.65	-1.5
1,936,725	+		PFLU_RS08710	0.65	+2.4
1,936,726	-		PFLU_RS08710	0.65	+1.2
1,936,767	+		PFLU_RS08710	0.67	+0.5
1,936,767	+		PFLU_RS08710	0.67	-2.8
1,936,767	+		PFLU_RS08710	0.67	+2.8
1,936,767	+		PFLU_RS08710	0.67	+1.8
1,936,768	-		PFLU_RS08710	0.67	+1.1
1,936,768	-		PFLU_RS08710	0.67	+0.5
1,936,768	-		PFLU_RS08710	0.67	-1.7
1,936,768	-		PFLU_RS08710	0.67	+1.4
1,936,789	+		PFLU_RS08710	0.68	+0.2
1,936,789	+		PFLU_RS08710	0.68	-0.7
1,936,796	+		PFLU_RS08710	0.68	+2.1
1,936,796	+		PFLU_RS08710	0.68	+1.3
1,936,797	-		PFLU_RS08710	0.68	-0.8
1,936,797	-		PFLU_RS08710	0.68	+3.2
1,936,797	-		PFLU_RS08710	0.68	+1.2
1,936,797	-		PFLU_RS08710	0.68	+1.3
1,936,815	+		PFLU_RS08710	0.69	+1.2
1,936,815	+		PFLU_RS08710	0.69	+3.4
1,936,815	+		PFLU_RS08710	0.69	-2.6
1,936,815	+		PFLU_RS08710	0.69	+0.2
1,936,815	+		PFLU_RS08710	0.69	+2.7
1,936,815	+		PFLU_RS08710	0.69	+1.5
1,936,816	-		PFLU_RS08710	0.69	+1.7
1,936,816	-		PFLU_RS08710	0.69	+2.1
1,936,816	-		PFLU_RS08710	0.69	+1.7
1,936,816	-		PFLU_RS08710	0.69	-1.2
1,936,816	-		PFLU_RS08710	0.69	+3.1
1,936,926	+		PFLU_RS08710	0.75	+1.3
1,936,927	-		PFLU_RS08710	0.75	+2.3
1,937,000	+		PFLU_RS08710	0.78	+2.5
1,937,000	+		PFLU_RS08710	0.78	+0.3
1,937,000	+		PFLU_RS08710	0.78	-1.7
1,937,000	+		PFLU_RS08710	0.78	-1.7
1,937,000	+		PFLU_RS08710	0.78	+1.9
1,937,000	+		PFLU_RS08710	0.78	+2.4
1,937,000	+		PFLU_RS08710	0.78	+0.4
1,937,000	+		PFLU_RS08710	0.78	-0.2
1,937,000	+		PFLU_RS08710	0.78	+0.9
1,937,000	+		PFLU_RS08710	0.78	+0.9
1,937,000	+		PFLU_RS08710	0.78	+1.5
1,937,000	+		PFLU_RS08710	0.78	-1.9
1,937,000	+		PFLU_RS08710	0.78	+2.8
1,937,000	+		PFLU_RS08710	0.78	+1.8
1,937,000	+		PFLU_RS08710	0.78	+1.1
1,937,000	+		PFLU_RS08710	0.78	-1.1
1,937,000	+		PFLU_RS08710	0.78	-0.2
1,937,001	-		PFLU_RS08710	0.78	+1.3
1,937,001	-		PFLU_RS08710	0.78	-1.6
1,937,001	-		PFLU_RS08710	0.78	-0.7
1,937,001	-		PFLU_RS08710	0.78	-1.9
1,937,001	-		PFLU_RS08710	0.78	-0.4
1,937,001	-		PFLU_RS08710	0.78	+0.3
1,937,001	-		PFLU_RS08710	0.78	+0.4
1,937,001	-		PFLU_RS08710	0.78	-0.1
1,937,001	-		PFLU_RS08710	0.78	+0.2
1,937,001	-		PFLU_RS08710	0.78	+0.8
1,937,001	-		PFLU_RS08710	0.78	-0.8
1,937,001	-		PFLU_RS08710	0.78	+0.5
1,937,001	-		PFLU_RS08710	0.78	+3.0
1,937,042	+		PFLU_RS08710	0.80	+0.4
1,937,042	+		PFLU_RS08710	0.80	+0.0
1,937,042	+		PFLU_RS08710	0.80	+1.3
1,937,042	+		PFLU_RS08710	0.80	-0.1
1,937,043	-		PFLU_RS08710	0.80	-3.1
1,937,043	-		PFLU_RS08710	0.80	+0.9
1,937,043	-		PFLU_RS08710	0.80	+3.7
1,937,043	-		PFLU_RS08710	0.80	+0.0
1,937,245	+		PFLU_RS08710	0.90	-0.6
1,937,245	+		PFLU_RS08710	0.90	-0.9
1,937,246	-				-0.9
1,937,246	-				+0.4
1,937,258	+				-0.7
1,937,274	+				-2.5
1,937,274	+				+3.4
1,937,274	+				+0.8
1,937,275	-				-2.0
1,937,275	-				-0.1
1,937,306	+				-1.4
1,937,306	+				+0.2
1,937,307	-				+4.5
1,937,307	-				+1.2
1,937,307	-				+0.9
1,937,307	-				-0.7
1,937,309	+				-0.5
1,937,309	+				+3.0
1,937,309	+				+1.0
1,937,309	+				-0.4
1,937,310	-				-1.2
1,937,310	-				-1.3
1,937,310	-				-1.4
1,937,310	-				-0.6
1,937,310	-				-1.9
1,937,310	-				-0.3
1,937,310	-				-2.0
1,937,310	-				+3.4
1,937,319	+				+0.7
1,937,319	+				+3.0
1,937,319	+				+2.5
1,937,319	+				+0.1
1,937,319	+				-1.3
1,937,319	+				+0.0
1,937,319	+				+2.7
1,937,320	-				+2.0
1,937,320	-				-1.9
1,937,320	-				-1.1
1,937,320	-				-1.5
1,937,320	-				-0.6
1,937,320	-				+1.4
1,937,343	+				+1.6
1,937,343	+				+1.8
1,937,343	+				-2.4
1,937,343	+				+0.0
1,937,343	+				+1.0
1,937,343	+				-0.6
1,937,343	+				+2.0
1,937,344	-				-1.0
1,937,344	-				-1.1
1,937,344	-				-0.7
1,937,344	-				-1.6
1,937,344	-				+3.2
1,937,344	-				-1.5
1,937,377	+				+2.0
1,937,377	+				-0.4
1,937,377	+				+0.7
1,937,377	+				-0.9
1,937,377	+				+0.8
1,937,377	+				+1.7
1,937,377	+				+1.8
1,937,377	+				+1.2
1,937,378	-				+1.5
1,937,378	-				+1.1
1,937,378	-				+2.1
1,937,378	-				+2.5
1,937,391	+				-2.2
1,937,391	+				-1.0
1,937,392	-				+0.1
1,937,392	-				+2.0
1,937,397	+				+1.0
1,937,397	+				+1.8
1,937,397	+				+2.0
1,937,397	+				+0.1
1,937,397	+				+1.3
1,937,397	+				+0.4
1,937,397	+				-0.7
1,937,397	+				+0.1
1,937,397	+				+0.4
1,937,397	+				+3.0
1,937,398	-				+0.8
1,937,398	-				-0.3
1,937,398	-				+1.4
1,937,416	+				+1.2
1,937,432	-				+1.8
1,937,444	+				-1.2
1,937,444	+				+1.8
1,937,444	+				-0.9
1,937,444	+				+0.5
1,937,444	+				+0.6
1,937,444	+				+0.9
1,937,444	+				+0.7
1,937,444	+				+1.8
1,937,445	-				-0.2
1,937,445	-				+0.7
1,937,445	-				-0.1
1,937,445	-				+0.4
1,937,445	-				-0.5
1,937,543	+		PFLU_RS08715	0.28	+1.5
1,937,543	+		PFLU_RS08715	0.28	-1.7
1,937,543	+		PFLU_RS08715	0.28	+1.8
1,937,544	-		PFLU_RS08715	0.28	-0.5
1,937,574	+		PFLU_RS08715	0.37	+2.2
1,937,574	+		PFLU_RS08715	0.37	+1.8
1,937,574	+		PFLU_RS08715	0.37	-1.1
1,937,574	+		PFLU_RS08715	0.37	+0.7
1,937,574	+		PFLU_RS08715	0.37	+1.3
1,937,574	+		PFLU_RS08715	0.37	+3.0
1,937,574	+		PFLU_RS08715	0.37	+1.7
1,937,574	+		PFLU_RS08715	0.37	+1.5
1,937,574	+		PFLU_RS08715	0.37	+0.4
1,937,574	+		PFLU_RS08715	0.37	+2.1
1,937,575	-		PFLU_RS08715	0.38	+1.9
1,937,575	-		PFLU_RS08715	0.38	+0.5
1,937,575	-		PFLU_RS08715	0.38	-0.5
1,937,575	-		PFLU_RS08715	0.38	-2.6
1,937,575	-		PFLU_RS08715	0.38	-1.9
1,937,575	-		PFLU_RS08715	0.38	-1.5
1,937,575	-		PFLU_RS08715	0.38	+0.9
1,937,575	-		PFLU_RS08715	0.38	-3.0
1,937,575	-		PFLU_RS08715	0.38	+1.0
1,937,575	-		PFLU_RS08715	0.38	+1.4
1,937,575	-		PFLU_RS08715	0.38	-2.4
1,937,605	-		PFLU_RS08715	0.46	+0.3
1,937,605	-		PFLU_RS08715	0.46	-3.2
1,937,605	-		PFLU_RS08715	0.46	+1.0
1,937,626	+		PFLU_RS08715	0.53	-0.1
1,937,626	+		PFLU_RS08715	0.53	-1.0
1,937,626	+		PFLU_RS08715	0.53	+0.4
1,937,626	+		PFLU_RS08715	0.53	+1.1
1,937,626	+		PFLU_RS08715	0.53	+1.8
1,937,626	+		PFLU_RS08715	0.53	+2.5
1,937,626	+		PFLU_RS08715	0.53	+2.8
1,937,626	+		PFLU_RS08715	0.53	+1.3
1,937,626	+		PFLU_RS08715	0.53	+1.3
1,937,626	+		PFLU_RS08715	0.53	-1.6
1,937,626	+		PFLU_RS08715	0.53	+3.5
1,937,626	+		PFLU_RS08715	0.53	+0.2
1,937,626	+		PFLU_RS08715	0.53	-1.2
1,937,626	+		PFLU_RS08715	0.53	+2.2
1,937,627	-		PFLU_RS08715	0.53	-1.8
1,937,627	-		PFLU_RS08715	0.53	-0.2
1,937,627	-		PFLU_RS08715	0.53	-1.9
1,937,627	-		PFLU_RS08715	0.53	-0.9
1,937,627	-		PFLU_RS08715	0.53	-1.2
1,937,627	-		PFLU_RS08715	0.53	+1.7
1,937,656	-		PFLU_RS08715	0.62	+1.1
1,937,656	-		PFLU_RS08715	0.62	+0.6
1,937,661	+		PFLU_RS08715	0.63	+0.2
1,937,661	+		PFLU_RS08715	0.63	-1.3
1,937,662	-		PFLU_RS08715	0.63	+1.7
1,937,662	-		PFLU_RS08715	0.63	+1.7
1,937,662	-		PFLU_RS08715	0.63	+1.1
1,937,772	+				+4.6
1,937,772	+				-1.8
1,937,772	+				+1.3
1,937,772	+				-0.8
1,937,772	+				-2.5
1,937,772	+				+0.3
1,937,772	+				+0.5
1,937,772	+				-1.1
1,937,772	+				+2.0
1,937,772	+				+0.8
1,937,773	-				+1.4
1,937,773	-				+2.1
1,937,773	-				+0.5
1,937,773	-				-0.6
1,937,773	-				+1.7
1,937,773	-				+0.4
1,937,773	-				+2.5
1,937,773	-				-0.5
1,937,773	-				+3.2
1,937,773	-				-1.7
1,937,804	-				+1.2
1,937,826	+				+0.5
1,937,868	+				+0.7
1,937,868	+				+2.2
1,937,869	-				-1.2
1,937,916	-				+1.6
1,937,983	+		PFLU_RS08720	0.12	-1.0
1,938,036	+		PFLU_RS08720	0.16	-0.9
1,938,036	+		PFLU_RS08720	0.16	+1.0
1,938,036	+		PFLU_RS08720	0.16	+2.3
1,938,036	+		PFLU_RS08720	0.16	-1.5
1,938,036	+		PFLU_RS08720	0.16	+2.5
1,938,036	+		PFLU_RS08720	0.16	+2.6
1,938,037	-		PFLU_RS08720	0.16	+3.3
1,938,037	-		PFLU_RS08720	0.16	+1.0
1,938,037	-		PFLU_RS08720	0.16	+1.2
1,938,037	-		PFLU_RS08720	0.16	-0.1
1,938,107	+		PFLU_RS08720	0.22	+3.0
1,938,107	+		PFLU_RS08720	0.22	-1.5
1,938,107	+		PFLU_RS08720	0.22	+0.8
1,938,108	-		PFLU_RS08720	0.22	+0.3
1,938,108	-		PFLU_RS08720	0.22	-2.4
1,938,108	-		PFLU_RS08720	0.22	-1.0
1,938,108	-		PFLU_RS08720	0.22	+2.6
1,938,108	-		PFLU_RS08720	0.22	-1.2
1,938,108	-		PFLU_RS08720	0.22	+1.0
1,938,108	-		PFLU_RS08720	0.22	-1.7
1,938,108	-		PFLU_RS08720	0.22	-2.6
1,938,132	+		PFLU_RS08720	0.24	+1.8
1,938,132	+		PFLU_RS08720	0.24	+1.6
1,938,132	+		PFLU_RS08720	0.24	+1.1
1,938,132	+		PFLU_RS08720	0.24	+1.6
1,938,132	+		PFLU_RS08720	0.24	+0.2
1,938,132	+		PFLU_RS08720	0.24	-1.3
1,938,132	+		PFLU_RS08720	0.24	-1.0
1,938,132	+		PFLU_RS08720	0.24	-0.2
1,938,132	+		PFLU_RS08720	0.24	+1.0
1,938,132	+		PFLU_RS08720	0.24	+2.1
1,938,132	+		PFLU_RS08720	0.24	+1.4
1,938,132	+		PFLU_RS08720	0.24	+3.8
1,938,132	+		PFLU_RS08720	0.24	-1.1
1,938,132	+		PFLU_RS08720	0.24	+1.7
1,938,132	+		PFLU_RS08720	0.24	+0.4
1,938,132	+		PFLU_RS08720	0.24	-2.5
1,938,132	+		PFLU_RS08720	0.24	+2.0
1,938,133	-		PFLU_RS08720	0.24	-1.9
1,938,133	-		PFLU_RS08720	0.24	+0.6
1,938,133	-		PFLU_RS08720	0.24	-0.8
1,938,133	-		PFLU_RS08720	0.24	-2.2
1,938,133	-		PFLU_RS08720	0.24	+0.1
1,938,133	-		PFLU_RS08720	0.24	-2.3
1,938,133	-		PFLU_RS08720	0.24	+0.7
1,938,276	-		PFLU_RS08720	0.35	+2.0
1,938,439	+		PFLU_RS08720	0.48	-0.6
1,938,439	+		PFLU_RS08720	0.48	+2.4
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