Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06965

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
1,558,078	+		PFLU_RS06960	0.26	+2.6
1,558,078	+		PFLU_RS06960	0.26	+0.2
1,558,079	-		PFLU_RS06960	0.26	-1.4
1,558,079	-		PFLU_RS06960	0.26	-0.6
1,558,079	-		PFLU_RS06960	0.26	+1.5
1,558,093	+		PFLU_RS06960	0.28	-0.1
1,558,093	+		PFLU_RS06960	0.28	-1.6
1,558,094	-		PFLU_RS06960	0.28	+1.6
1,558,094	-		PFLU_RS06960	0.28	-0.1
1,558,094	-		PFLU_RS06960	0.28	+1.5
1,558,196	+		PFLU_RS06960	0.38	+0.4
1,558,196	+		PFLU_RS06960	0.38	+1.1
1,558,196	+		PFLU_RS06960	0.38	+0.6
1,558,197	-		PFLU_RS06960	0.38	+2.0
1,558,197	-		PFLU_RS06960	0.38	+0.9
1,558,208	+		PFLU_RS06960	0.39	-2.2
1,558,208	+		PFLU_RS06960	0.39	+1.6
1,558,209	-		PFLU_RS06960	0.39	-1.0
1,558,209	-		PFLU_RS06960	0.39	+0.4
1,558,209	-		PFLU_RS06960	0.39	-1.0
1,558,279	+		PFLU_RS06960	0.46	+0.1
1,558,279	+		PFLU_RS06960	0.46	+2.1
1,558,279	+		PFLU_RS06960	0.46	+1.7
1,558,279	+		PFLU_RS06960	0.46	-1.3
1,558,381	+		PFLU_RS06960	0.56	+0.6
1,558,381	+		PFLU_RS06960	0.56	-1.0
1,558,381	+		PFLU_RS06960	0.56	-1.4
1,558,381	+		PFLU_RS06960	0.56	+1.1
1,558,381	+		PFLU_RS06960	0.56	-1.7
1,558,381	+		PFLU_RS06960	0.56	+0.1
1,558,382	-		PFLU_RS06960	0.56	-0.8
1,558,382	-		PFLU_RS06960	0.56	-0.9
1,558,396	+		PFLU_RS06960	0.57	+1.1
1,558,396	+		PFLU_RS06960	0.57	-1.5
1,558,396	+		PFLU_RS06960	0.57	+0.6
1,558,396	+		PFLU_RS06960	0.57	+1.0
1,558,396	+		PFLU_RS06960	0.57	-0.6
1,558,397	-		PFLU_RS06960	0.57	-2.4
1,558,397	-		PFLU_RS06960	0.57	-3.1
1,558,397	-		PFLU_RS06960	0.57	-0.8
1,558,397	-		PFLU_RS06960	0.57	+0.3
1,558,406	+		PFLU_RS06960	0.58	-2.2
1,558,406	+		PFLU_RS06960	0.58	+2.3
1,558,407	-		PFLU_RS06960	0.58	+2.2
1,558,407	-		PFLU_RS06960	0.58	-1.9
1,558,420	+		PFLU_RS06960	0.60	-2.0
1,558,420	+		PFLU_RS06960	0.60	+1.5
1,558,420	+		PFLU_RS06960	0.60	+1.3
1,558,420	+		PFLU_RS06960	0.60	-2.4
1,558,421	-		PFLU_RS06960	0.60	-1.0
1,558,421	-		PFLU_RS06960	0.60	-2.7
1,558,421	-		PFLU_RS06960	0.60	+1.6
1,558,421	-		PFLU_RS06960	0.60	-0.8
1,558,481	+		PFLU_RS06960	0.66	-0.4
1,558,481	+		PFLU_RS06960	0.66	-1.5
1,558,496	+		PFLU_RS06960	0.67	+1.4
1,558,496	+		PFLU_RS06960	0.67	-1.6
1,558,496	+		PFLU_RS06960	0.67	-0.7
1,558,497	-		PFLU_RS06960	0.67	-2.6
1,558,525	+		PFLU_RS06960	0.70	-0.6
1,558,525	+		PFLU_RS06960	0.70	+1.3
1,558,525	+		PFLU_RS06960	0.70	+3.2
1,558,525	+		PFLU_RS06960	0.70	-1.5
1,558,525	+		PFLU_RS06960	0.70	-0.1
1,558,525	+		PFLU_RS06960	0.70	+0.9
1,558,525	+		PFLU_RS06960	0.70	-1.9
1,558,526	-		PFLU_RS06960	0.70	+0.6
1,558,528	+		PFLU_RS06960	0.70	+0.9
1,558,528	+		PFLU_RS06960	0.70	-1.5
1,558,529	-		PFLU_RS06960	0.70	+3.6
1,558,529	-		PFLU_RS06960	0.70	-0.2
1,558,529	-		PFLU_RS06960	0.70	-1.6
1,558,812	-				-2.1
1,558,841	+				+0.1
1,558,842	-				+2.3
1,558,868	+				-0.5
1,558,868	+				-1.6
1,558,869	-				+2.1
1,558,926	+				-2.1
1,558,926	+				+0.8
1,558,927	-				-2.6
1,558,927	-				-0.4
1,558,927	-				+0.8
1,558,932	+				+0.1
1,558,932	+				-1.4
1,558,933	-				-1.1
1,558,933	-				-2.2
1,558,933	-				-1.8
1,558,933	-				-1.1
1,559,036	+				+0.2
1,559,037	-				+2.4
1,559,144	+		PFLU_RS06965	0.16	+1.4
1,559,144	+		PFLU_RS06965	0.16	-2.7
1,559,144	+		PFLU_RS06965	0.16	-1.5
1,559,144	+		PFLU_RS06965	0.16	+0.1
1,559,144	+		PFLU_RS06965	0.16	-1.9
1,559,144	+		PFLU_RS06965	0.16	-2.5
1,559,144	+		PFLU_RS06965	0.16	-1.6
1,559,144	+		PFLU_RS06965	0.16	-1.9
1,559,145	-		PFLU_RS06965	0.17	+2.1
1,559,145	-		PFLU_RS06965	0.17	-0.2
1,559,145	-		PFLU_RS06965	0.17	-0.8
1,559,145	-		PFLU_RS06965	0.17	+2.3
1,559,145	-		PFLU_RS06965	0.17	+0.0
1,559,145	-		PFLU_RS06965	0.17	+1.6
1,559,145	-		PFLU_RS06965	0.17	+0.3
1,559,309	+		PFLU_RS06965	0.31	+2.1
1,559,310	-		PFLU_RS06965	0.31	-1.2
1,559,310	-		PFLU_RS06965	0.31	+1.9
1,559,558	+		PFLU_RS06965	0.52	-1.5
1,559,558	+		PFLU_RS06965	0.52	+2.0
1,559,558	+		PFLU_RS06965	0.52	-1.8
1,559,558	+		PFLU_RS06965	0.52	-0.9
1,559,558	+		PFLU_RS06965	0.52	+3.1
1,559,558	+		PFLU_RS06965	0.52	+0.7
1,559,558	+		PFLU_RS06965	0.52	-0.8
1,559,558	+		PFLU_RS06965	0.52	-1.2
1,559,558	+		PFLU_RS06965	0.52	+1.2
1,559,558	+		PFLU_RS06965	0.52	-1.4
1,559,558	+		PFLU_RS06965	0.52	+1.8
1,559,558	+		PFLU_RS06965	0.52	+2.8
1,559,558	+		PFLU_RS06965	0.52	-1.3
1,559,558	+		PFLU_RS06965	0.52	+0.7
1,559,558	+		PFLU_RS06965	0.52	-2.6
1,559,558	+		PFLU_RS06965	0.52	-2.0
1,559,558	+		PFLU_RS06965	0.52	+1.2
1,559,558	+		PFLU_RS06965	0.52	+0.6
1,559,559	-		PFLU_RS06965	0.53	-0.8
1,559,559	-		PFLU_RS06965	0.53	+0.9
1,559,559	-		PFLU_RS06965	0.53	-0.5
1,559,559	-		PFLU_RS06965	0.53	+1.4
1,559,559	-		PFLU_RS06965	0.53	+0.1
1,559,559	-		PFLU_RS06965	0.53	-1.8
1,559,559	-		PFLU_RS06965	0.53	+0.5
1,559,559	-		PFLU_RS06965	0.53	-0.0
1,559,559	-		PFLU_RS06965	0.53	+2.1
1,559,559	-		PFLU_RS06965	0.53	+1.6
1,559,559	-		PFLU_RS06965	0.53	-1.3
1,559,559	-		PFLU_RS06965	0.53	-2.4
1,559,559	-		PFLU_RS06965	0.53	+0.9
1,559,559	-		PFLU_RS06965	0.53	-0.9
1,559,559	-		PFLU_RS06965	0.53	+2.5
1,559,559	-		PFLU_RS06965	0.53	+2.0
1,559,559	-		PFLU_RS06965	0.53	-1.4
1,559,559	-		PFLU_RS06965	0.53	-1.6
1,559,559	-		PFLU_RS06965	0.53	+2.8
1,559,559	-		PFLU_RS06965	0.53	-1.7
1,559,562	+		PFLU_RS06965	0.53	-1.3
1,559,562	+		PFLU_RS06965	0.53	-1.3
1,559,562	+		PFLU_RS06965	0.53	+1.0
1,559,562	+		PFLU_RS06965	0.53	-1.3
1,559,562	+		PFLU_RS06965	0.53	-2.1
1,559,562	+		PFLU_RS06965	0.53	-0.7
1,559,562	+		PFLU_RS06965	0.53	-1.4
1,559,562	+		PFLU_RS06965	0.53	+1.5
1,559,562	+		PFLU_RS06965	0.53	+1.7
1,559,562	+		PFLU_RS06965	0.53	-1.4
1,559,562	+		PFLU_RS06965	0.53	-2.5
1,559,562	+		PFLU_RS06965	0.53	-2.1
1,559,563	-		PFLU_RS06965	0.53	-0.4
1,559,563	-		PFLU_RS06965	0.53	+0.9
1,559,563	-		PFLU_RS06965	0.53	+0.3
1,559,563	-		PFLU_RS06965	0.53	-0.5
1,559,563	-		PFLU_RS06965	0.53	+0.1
1,559,563	-		PFLU_RS06965	0.53	+1.1
1,559,563	-		PFLU_RS06965	0.53	-2.7
1,559,563	-		PFLU_RS06965	0.53	+4.5
1,559,563	-		PFLU_RS06965	0.53	+2.2
1,559,563	-		PFLU_RS06965	0.53	-2.7
1,559,563	-		PFLU_RS06965	0.53	-0.4
1,559,563	-		PFLU_RS06965	0.53	-2.6
1,559,563	-		PFLU_RS06965	0.53	-0.3
1,559,563	-		PFLU_RS06965	0.53	+0.2
1,559,563	-		PFLU_RS06965	0.53	+0.9
1,559,563	-		PFLU_RS06965	0.53	+1.8
1,559,563	-		PFLU_RS06965	0.53	-2.3
1,559,644	-		PFLU_RS06965	0.60	-1.3
1,559,684	+		PFLU_RS06965	0.63	+1.5
1,559,684	+		PFLU_RS06965	0.63	-2.1
1,559,684	+		PFLU_RS06965	0.63	-2.7
1,559,685	-		PFLU_RS06965	0.64	-1.2
1,559,685	-		PFLU_RS06965	0.64	+2.5
1,559,685	-		PFLU_RS06965	0.64	-1.1
1,559,685	-		PFLU_RS06965	0.64	-3.2
1,559,768	+		PFLU_RS06965	0.71	-0.4
1,559,768	+		PFLU_RS06965	0.71	-2.7
1,559,769	-		PFLU_RS06965	0.71	-0.4
1,560,157	+				+0.4
1,560,157	+				-3.0
1,560,157	+				-0.0
1,560,157	+				+0.2
1,560,157	+				+1.9
1,560,157	+				-1.4
1,560,158	-				+0.7
1,560,158	-				-1.1
1,560,158	-				+2.7
1,560,158	-				-2.7
1,560,158	-				-0.8
1,560,237	+		PFLU_RS06970	0.14	-1.0
1,560,237	+		PFLU_RS06970	0.14	+0.5
1,560,237	+		PFLU_RS06970	0.14	+1.7
1,560,238	-		PFLU_RS06970	0.14	+0.6
1,560,238	-		PFLU_RS06970	0.14	+0.5
1,560,260	+		PFLU_RS06970	0.16	-1.9
1,560,260	+		PFLU_RS06970	0.16	-3.0
1,560,260	+		PFLU_RS06970	0.16	-1.4
1,560,260	+		PFLU_RS06970	0.16	+1.5
1,560,260	+		PFLU_RS06970	0.16	+1.9
1,560,260	+		PFLU_RS06970	0.16	+1.6
1,560,261	-		PFLU_RS06970	0.16	-1.1
1,560,261	-		PFLU_RS06970	0.16	+1.2
1,560,261	-		PFLU_RS06970	0.16	-1.2
1,560,261	-		PFLU_RS06970	0.16	+0.8
1,560,261	-		PFLU_RS06970	0.16	-2.1
1,560,261	-		PFLU_RS06970	0.16	+1.2
1,560,345	-		PFLU_RS06970	0.23	-0.0
1,560,345	-		PFLU_RS06970	0.23	-2.6
1,560,345	-		PFLU_RS06970	0.23	-1.9
1,560,501	-		PFLU_RS06970	0.36	-0.4
1,560,501	-		PFLU_RS06970	0.36	-0.0
1,560,533	+		PFLU_RS06970	0.39	-2.6
1,560,533	+		PFLU_RS06970	0.39	+1.3
1,560,533	+		PFLU_RS06970	0.39	-0.8
1,560,533	+		PFLU_RS06970	0.39	+0.7
1,560,534	-		PFLU_RS06970	0.39	-1.7
1,560,565	+		PFLU_RS06970	0.42	-0.9
1,560,565	+		PFLU_RS06970	0.42	-0.6
1,560,565	+		PFLU_RS06970	0.42	-2.8
1,560,565	+		PFLU_RS06970	0.42	-2.4
1,560,565	+		PFLU_RS06970	0.42	+1.8
1,560,566	-		PFLU_RS06970	0.42	+2.1
1,560,566	-		PFLU_RS06970	0.42	-0.0
1,560,566	-		PFLU_RS06970	0.42	-1.4
1,560,668	+		PFLU_RS06970	0.50	-0.1
1,560,668	+		PFLU_RS06970	0.50	-1.7
1,560,669	-		PFLU_RS06970	0.50	-0.3
1,560,669	-		PFLU_RS06970	0.50	-2.1
1,560,669	-		PFLU_RS06970	0.50	-1.0
1,560,770	+		PFLU_RS06970	0.59	+0.5
1,560,770	+		PFLU_RS06970	0.59	+1.2
1,561,019	+		PFLU_RS06970	0.80	-2.9
1,561,050	+		PFLU_RS06970	0.82	-1.7
1,561,050	+		PFLU_RS06970	0.82	-2.7
1,561,050	+		PFLU_RS06970	0.82	-0.5
1,561,050	+		PFLU_RS06970	0.82	-1.1
1,561,051	-		PFLU_RS06970	0.83	+3.5