Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03680

Experiment: nitrogen source nitrite 5mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03675 and ABZR87_RS03680 are separated by 136 nucleotidesABZR87_RS03680 and ABZR87_RS03685 are separated by 198 nucleotides ABZR87_RS03675: ABZR87_RS03675 - alpha/beta hydrolase, at 766,504 to 767,523 _RS03675 ABZR87_RS03680: ABZR87_RS03680 - DUF1330 domain-containing protein, at 767,660 to 767,914 _RS03680 ABZR87_RS03685: ABZR87_RS03685 - PASTA domain-containing protein, at 768,113 to 769,072 _RS03685 Position (kb) 767 768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 766.815 kb on + strand, within ABZR87_RS03675at 766.815 kb on + strand, within ABZR87_RS03675at 766.816 kb on - strand, within ABZR87_RS03675at 766.816 kb on - strand, within ABZR87_RS03675at 766.921 kb on + strand, within ABZR87_RS03675at 766.921 kb on + strand, within ABZR87_RS03675at 766.922 kb on - strand, within ABZR87_RS03675at 766.922 kb on - strand, within ABZR87_RS03675at 766.922 kb on - strand, within ABZR87_RS03675at 766.922 kb on - strand, within ABZR87_RS03675at 766.922 kb on - strand, within ABZR87_RS03675at 766.969 kb on + strand, within ABZR87_RS03675at 766.969 kb on + strand, within ABZR87_RS03675at 766.969 kb on + strand, within ABZR87_RS03675at 766.969 kb on + strand, within ABZR87_RS03675at 766.970 kb on - strand, within ABZR87_RS03675at 766.970 kb on - strand, within ABZR87_RS03675at 767.015 kb on + strand, within ABZR87_RS03675at 767.167 kb on + strand, within ABZR87_RS03675at 767.230 kb on + strand, within ABZR87_RS03675at 767.230 kb on + strand, within ABZR87_RS03675at 767.231 kb on - strand, within ABZR87_RS03675at 767.231 kb on - strand, within ABZR87_RS03675at 767.263 kb on + strand, within ABZR87_RS03675at 767.263 kb on + strand, within ABZR87_RS03675at 767.263 kb on + strand, within ABZR87_RS03675at 767.263 kb on + strand, within ABZR87_RS03675at 767.263 kb on + strand, within ABZR87_RS03675at 767.264 kb on - strand, within ABZR87_RS03675at 767.264 kb on - strand, within ABZR87_RS03675at 767.264 kb on - strand, within ABZR87_RS03675at 767.264 kb on - strand, within ABZR87_RS03675at 767.264 kb on - strand, within ABZR87_RS03675at 767.264 kb on - strand, within ABZR87_RS03675at 767.264 kb on - strand, within ABZR87_RS03675at 767.326 kb on - strand, within ABZR87_RS03675at 767.365 kb on + strand, within ABZR87_RS03675at 767.365 kb on + strand, within ABZR87_RS03675at 767.365 kb on + strand, within ABZR87_RS03675at 767.365 kb on + strand, within ABZR87_RS03675at 767.365 kb on + strand, within ABZR87_RS03675at 767.365 kb on + strand, within ABZR87_RS03675at 767.365 kb on + strand, within ABZR87_RS03675at 767.366 kb on - strand, within ABZR87_RS03675at 767.366 kb on - strand, within ABZR87_RS03675at 767.366 kb on - strand, within ABZR87_RS03675at 767.413 kb on + strand, within ABZR87_RS03675at 767.413 kb on + strand, within ABZR87_RS03675at 767.414 kb on - strand, within ABZR87_RS03675at 767.414 kb on - strand, within ABZR87_RS03675at 767.414 kb on - strand, within ABZR87_RS03675at 767.521 kb on + strandat 767.521 kb on + strandat 767.521 kb on + strandat 767.522 kb on - strandat 767.573 kb on + strandat 767.573 kb on + strandat 767.573 kb on + strandat 767.730 kb on + strand, within ABZR87_RS03680at 767.730 kb on + strand, within ABZR87_RS03680at 767.730 kb on + strand, within ABZR87_RS03680at 767.730 kb on + strand, within ABZR87_RS03680at 767.730 kb on + strand, within ABZR87_RS03680at 767.730 kb on + strand, within ABZR87_RS03680at 767.730 kb on + strand, within ABZR87_RS03680at 767.731 kb on - strand, within ABZR87_RS03680at 767.731 kb on - strand, within ABZR87_RS03680at 767.731 kb on - strand, within ABZR87_RS03680at 767.731 kb on - strand, within ABZR87_RS03680at 767.731 kb on - strand, within ABZR87_RS03680at 767.731 kb on - strand, within ABZR87_RS03680at 767.731 kb on - strand, within ABZR87_RS03680at 767.745 kb on + strand, within ABZR87_RS03680at 767.745 kb on + strand, within ABZR87_RS03680at 767.745 kb on + strand, within ABZR87_RS03680at 768.001 kb on + strandat 768.001 kb on + strandat 768.001 kb on + strandat 768.001 kb on + strandat 768.002 kb on - strandat 768.002 kb on - strandat 768.002 kb on - strandat 768.013 kb on + strandat 768.013 kb on + strandat 768.014 kb on - strandat 768.014 kb on - strandat 768.022 kb on + strandat 768.023 kb on - strandat 768.058 kb on + strandat 768.058 kb on + strandat 768.059 kb on - strandat 768.088 kb on + strandat 768.088 kb on + strandat 768.088 kb on + strandat 768.088 kb on + strandat 768.089 kb on - strandat 768.089 kb on - strandat 768.092 kb on - strandat 768.092 kb on - strandat 768.202 kb on + strandat 768.202 kb on + strandat 768.202 kb on + strandat 768.202 kb on + strandat 768.202 kb on + strandat 768.203 kb on - strandat 768.203 kb on - strandat 768.203 kb on - strandat 768.203 kb on - strandat 768.203 kb on - strandat 768.499 kb on - strand, within ABZR87_RS03685at 768.499 kb on - strand, within ABZR87_RS03685at 768.585 kb on + strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.624 kb on - strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.819 kb on - strand, within ABZR87_RS03685at 768.876 kb on + strand, within ABZR87_RS03685at 768.876 kb on + strand, within ABZR87_RS03685at 768.876 kb on + strand, within ABZR87_RS03685at 768.876 kb on + strand, within ABZR87_RS03685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
remove
766,815 + ABZR87_RS03675 0.30 -0.5
766,815 + ABZR87_RS03675 0.30 +0.4
766,816 - ABZR87_RS03675 0.31 +0.7
766,816 - ABZR87_RS03675 0.31 +0.0
766,921 + ABZR87_RS03675 0.41 +0.1
766,921 + ABZR87_RS03675 0.41 -0.3
766,922 - ABZR87_RS03675 0.41 -2.2
766,922 - ABZR87_RS03675 0.41 +1.2
766,922 - ABZR87_RS03675 0.41 -0.4
766,922 - ABZR87_RS03675 0.41 +0.8
766,922 - ABZR87_RS03675 0.41 -0.3
766,969 + ABZR87_RS03675 0.46 +1.1
766,969 + ABZR87_RS03675 0.46 -1.3
766,969 + ABZR87_RS03675 0.46 -0.5
766,969 + ABZR87_RS03675 0.46 +0.2
766,970 - ABZR87_RS03675 0.46 -0.1
766,970 - ABZR87_RS03675 0.46 -0.2
767,015 + ABZR87_RS03675 0.50 +0.9
767,167 + ABZR87_RS03675 0.65 -1.1
767,230 + ABZR87_RS03675 0.71 -0.1
767,230 + ABZR87_RS03675 0.71 +0.6
767,231 - ABZR87_RS03675 0.71 -0.3
767,231 - ABZR87_RS03675 0.71 +1.1
767,263 + ABZR87_RS03675 0.74 -0.7
767,263 + ABZR87_RS03675 0.74 -0.2
767,263 + ABZR87_RS03675 0.74 +0.4
767,263 + ABZR87_RS03675 0.74 +0.1
767,263 + ABZR87_RS03675 0.74 +1.4
767,264 - ABZR87_RS03675 0.75 +0.0
767,264 - ABZR87_RS03675 0.75 -0.4
767,264 - ABZR87_RS03675 0.75 -0.1
767,264 - ABZR87_RS03675 0.75 +1.6
767,264 - ABZR87_RS03675 0.75 -0.7
767,264 - ABZR87_RS03675 0.75 -0.5
767,264 - ABZR87_RS03675 0.75 -1.1
767,326 - ABZR87_RS03675 0.81 +1.0
767,365 + ABZR87_RS03675 0.84 -0.7
767,365 + ABZR87_RS03675 0.84 +0.1
767,365 + ABZR87_RS03675 0.84 +0.6
767,365 + ABZR87_RS03675 0.84 +0.2
767,365 + ABZR87_RS03675 0.84 -0.2
767,365 + ABZR87_RS03675 0.84 -1.4
767,365 + ABZR87_RS03675 0.84 +0.2
767,366 - ABZR87_RS03675 0.85 +0.1
767,366 - ABZR87_RS03675 0.85 +0.1
767,366 - ABZR87_RS03675 0.85 +0.5
767,413 + ABZR87_RS03675 0.89 -0.7
767,413 + ABZR87_RS03675 0.89 +1.4
767,414 - ABZR87_RS03675 0.89 +0.3
767,414 - ABZR87_RS03675 0.89 +0.7
767,414 - ABZR87_RS03675 0.89 -0.1
767,521 + -1.6
767,521 + -0.3
767,521 + -0.1
767,522 - +0.4
767,573 + +0.1
767,573 + +0.4
767,573 + +0.7
767,730 + ABZR87_RS03680 0.27 +0.2
767,730 + ABZR87_RS03680 0.27 +0.3
767,730 + ABZR87_RS03680 0.27 +0.3
767,730 + ABZR87_RS03680 0.27 -0.4
767,730 + ABZR87_RS03680 0.27 -0.1
767,730 + ABZR87_RS03680 0.27 -0.1
767,730 + ABZR87_RS03680 0.27 -1.8
767,731 - ABZR87_RS03680 0.28 -0.3
767,731 - ABZR87_RS03680 0.28 -0.5
767,731 - ABZR87_RS03680 0.28 -0.0
767,731 - ABZR87_RS03680 0.28 -0.8
767,731 - ABZR87_RS03680 0.28 +0.3
767,731 - ABZR87_RS03680 0.28 +0.8
767,731 - ABZR87_RS03680 0.28 -1.9
767,745 + ABZR87_RS03680 0.33 -1.4
767,745 + ABZR87_RS03680 0.33 -0.4
767,745 + ABZR87_RS03680 0.33 -0.8
768,001 + -1.2
768,001 + +0.9
768,001 + +0.5
768,001 + +0.3
768,002 - -0.5
768,002 - +1.6
768,002 - -0.6
768,013 + -0.1
768,013 + +0.6
768,014 - +0.9
768,014 - +0.4
768,022 + -0.1
768,023 - -1.0
768,058 + +0.2
768,058 + -0.3
768,059 - -1.0
768,088 + -2.9
768,088 + +0.5
768,088 + -0.7
768,088 + +1.4
768,089 - -1.0
768,089 - -0.4
768,092 - +0.3
768,092 - +0.4
768,202 + -0.0
768,202 + -0.1
768,202 + -1.3
768,202 + -0.8
768,202 + +1.1
768,203 - +0.3
768,203 - +1.3
768,203 - +0.4
768,203 - +0.1
768,203 - -0.3
768,499 - ABZR87_RS03685 0.40 -0.1
768,499 - ABZR87_RS03685 0.40 +0.4
768,585 + ABZR87_RS03685 0.49 +0.7
768,586 - ABZR87_RS03685 0.49 +0.6
768,586 - ABZR87_RS03685 0.49 +0.9
768,586 - ABZR87_RS03685 0.49 +2.7
768,586 - ABZR87_RS03685 0.49 -0.9
768,586 - ABZR87_RS03685 0.49 -0.4
768,624 - ABZR87_RS03685 0.53 +3.7
768,818 + ABZR87_RS03685 0.73 +0.5
768,818 + ABZR87_RS03685 0.73 +0.1
768,818 + ABZR87_RS03685 0.73 +0.8
768,818 + ABZR87_RS03685 0.73 +0.8
768,818 + ABZR87_RS03685 0.73 -0.0
768,818 + ABZR87_RS03685 0.73 -0.3
768,819 - ABZR87_RS03685 0.74 -1.2
768,876 + ABZR87_RS03685 0.79 +0.2
768,876 + ABZR87_RS03685 0.79 +0.9
768,876 + ABZR87_RS03685 0.79 +1.3
768,876 + ABZR87_RS03685 0.79 +0.3

Or see this region's nucleotide sequence