Experiment: Varel_Bryant_medium_Glucose with Oxytetracycline 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4560 and BT4561 are separated by 39 nucleotides BT4561 and BT4562 are separated by 6 nucleotides BT4562 and BT4563 are separated by 163 nucleotides
BT4560: BT4560 - thiamine biosynthesis lipoprotein apbE precursor (NCBI ptt file), at 5,981,615 to 5,982,631
BT4560
BT4561: BT4561 - conserved hypothetical protein, putative integral membrane protein (NCBI ptt file), at 5,982,671 to 5,983,252
BT4561
BT4562: BT4562 - hypothetical protein (NCBI ptt file), at 5,983,259 to 5,983,825
BT4562
BT4563: BT4563 - hypothetical protein (NCBI ptt file), at 5,983,989 to 5,984,540
BT4563
Position (kb) 5982
5983
5984 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5982.670 kb on - strand at 5982.684 kb on - strand at 5982.684 kb on - strand at 5982.693 kb on - strand at 5982.693 kb on - strand at 5982.790 kb on - strand, within BT4561 at 5982.819 kb on - strand, within BT4561 at 5982.911 kb on - strand, within BT4561 at 5982.911 kb on - strand, within BT4561 at 5983.004 kb on - strand, within BT4561 at 5983.004 kb on - strand, within BT4561 at 5983.050 kb on - strand, within BT4561 at 5983.163 kb on - strand, within BT4561 at 5983.351 kb on - strand, within BT4562 at 5983.389 kb on - strand, within BT4562 at 5983.582 kb on - strand, within BT4562 at 5983.707 kb on - strand, within BT4562 at 5984.199 kb on - strand, within BT4563 at 5984.204 kb on - strand, within BT4563 at 5984.211 kb on - strand, within BT4563
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Oxytetracycline 0.000390625 mM remove 5,982,670 - -0.0 5,982,684 - -1.6 5,982,684 - -0.0 5,982,693 - -2.0 5,982,693 - -3.0 5,982,790 - BT4561 0.20 -0.6 5,982,819 - BT4561 0.25 -2.5 5,982,911 - BT4561 0.41 -1.0 5,982,911 - BT4561 0.41 -0.0 5,983,004 - BT4561 0.57 -1.6 5,983,004 - BT4561 0.57 -3.3 5,983,050 - BT4561 0.65 -2.6 5,983,163 - BT4561 0.85 -2.8 5,983,351 - BT4562 0.16 -2.0 5,983,389 - BT4562 0.23 -0.0 5,983,582 - BT4562 0.57 -1.0 5,983,707 - BT4562 0.79 -1.0 5,984,199 - BT4563 0.38 +1.3 5,984,204 - BT4563 0.39 -2.8 5,984,211 - BT4563 0.40 -1.6
Or see this region's nucleotide sequence