Experiment: KB with Acacetin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5003 and Psyr_5004 are separated by 121 nucleotides Psyr_5004 and Psyr_5005 are separated by 59 nucleotides
Psyr_5003: Psyr_5003 - MscS Mechanosensitive ion channel, at 5,933,543 to 5,934,343
_5003
Psyr_5004: Psyr_5004 - chemotaxis sensory transducer, at 5,934,465 to 5,936,483
_5004
Psyr_5005: Psyr_5005 - protein of unknown function DUF945, at 5,936,543 to 5,938,108
_5005
Position (kb) 5934
5935
5936
5937 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5933.485 kb on + strand at 5933.485 kb on + strand at 5933.485 kb on + strand at 5933.485 kb on + strand at 5933.486 kb on - strand at 5933.523 kb on - strand at 5933.523 kb on - strand at 5933.748 kb on - strand, within Psyr_5003 at 5933.748 kb on - strand, within Psyr_5003 at 5933.748 kb on - strand, within Psyr_5003 at 5933.748 kb on - strand, within Psyr_5003 at 5933.748 kb on - strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.779 kb on + strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.780 kb on - strand, within Psyr_5003 at 5933.807 kb on + strand, within Psyr_5003 at 5933.807 kb on + strand, within Psyr_5003 at 5933.807 kb on + strand, within Psyr_5003 at 5933.807 kb on + strand, within Psyr_5003 at 5933.808 kb on - strand, within Psyr_5003 at 5933.808 kb on - strand, within Psyr_5003 at 5933.808 kb on - strand, within Psyr_5003 at 5933.808 kb on - strand, within Psyr_5003 at 5933.948 kb on - strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.189 kb on + strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.190 kb on - strand, within Psyr_5003 at 5934.264 kb on - strand at 5934.281 kb on + strand at 5934.281 kb on + strand at 5934.282 kb on - strand at 5934.282 kb on - strand at 5934.354 kb on + strand at 5934.408 kb on + strand at 5934.409 kb on - strand at 5934.409 kb on - strand at 5934.452 kb on + strand at 5934.460 kb on + strand at 5934.460 kb on + strand at 5934.461 kb on - strand at 5934.475 kb on + strand at 5934.475 kb on + strand at 5934.475 kb on + strand at 5934.476 kb on - strand at 5934.476 kb on - strand at 5934.476 kb on - strand at 5934.527 kb on + strand at 5934.527 kb on + strand at 5934.527 kb on + strand at 5934.527 kb on + strand at 5934.527 kb on + strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.528 kb on - strand at 5934.582 kb on + strand at 5934.582 kb on + strand at 5934.583 kb on - strand at 5934.714 kb on + strand, within Psyr_5004 at 5934.715 kb on - strand, within Psyr_5004 at 5934.715 kb on - strand, within Psyr_5004 at 5934.793 kb on + strand, within Psyr_5004 at 5934.793 kb on + strand, within Psyr_5004 at 5934.793 kb on + strand, within Psyr_5004 at 5934.793 kb on + strand, within Psyr_5004 at 5934.794 kb on - strand, within Psyr_5004 at 5934.930 kb on + strand, within Psyr_5004 at 5934.930 kb on + strand, within Psyr_5004 at 5934.930 kb on + strand, within Psyr_5004 at 5934.931 kb on - strand, within Psyr_5004 at 5934.985 kb on - strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.209 kb on + strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.210 kb on - strand, within Psyr_5004 at 5935.318 kb on - strand, within Psyr_5004 at 5935.318 kb on - strand, within Psyr_5004 at 5935.377 kb on + strand, within Psyr_5004 at 5935.377 kb on + strand, within Psyr_5004 at 5935.377 kb on + strand, within Psyr_5004 at 5935.378 kb on - strand, within Psyr_5004 at 5935.378 kb on - strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.710 kb on + strand, within Psyr_5004 at 5935.711 kb on - strand, within Psyr_5004 at 5935.711 kb on - strand, within Psyr_5004 at 5935.711 kb on - strand, within Psyr_5004 at 5935.711 kb on - strand, within Psyr_5004 at 5936.481 kb on + strand at 5936.506 kb on + strand at 5936.507 kb on - strand at 5936.507 kb on - strand at 5936.545 kb on - strand at 5936.641 kb on - strand at 5936.641 kb on - strand at 5936.909 kb on - strand, within Psyr_5005 at 5937.085 kb on + strand, within Psyr_5005 at 5937.093 kb on + strand, within Psyr_5005 at 5937.093 kb on + strand, within Psyr_5005 at 5937.094 kb on - strand, within Psyr_5005 at 5937.094 kb on - strand, within Psyr_5005 at 5937.094 kb on - strand, within Psyr_5005 at 5937.103 kb on - strand, within Psyr_5005 at 5937.103 kb on - strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.201 kb on + strand, within Psyr_5005 at 5937.202 kb on - strand, within Psyr_5005 at 5937.202 kb on - strand, within Psyr_5005 at 5937.202 kb on - strand, within Psyr_5005 at 5937.202 kb on - strand, within Psyr_5005 at 5937.337 kb on - strand, within Psyr_5005 at 5937.337 kb on - strand, within Psyr_5005 at 5937.337 kb on - strand, within Psyr_5005 at 5937.359 kb on - strand, within Psyr_5005
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acacetin 10 mM remove 5,933,485 + -0.3 5,933,485 + +1.0 5,933,485 + +0.2 5,933,485 + -0.1 5,933,486 - -0.4 5,933,523 - -0.2 5,933,523 - +0.0 5,933,748 - Psyr_5003 0.26 +0.8 5,933,748 - Psyr_5003 0.26 +0.7 5,933,748 - Psyr_5003 0.26 +0.3 5,933,748 - Psyr_5003 0.26 +0.3 5,933,748 - Psyr_5003 0.26 +0.1 5,933,779 + Psyr_5003 0.29 +1.6 5,933,779 + Psyr_5003 0.29 -0.8 5,933,779 + Psyr_5003 0.29 -1.5 5,933,779 + Psyr_5003 0.29 +0.2 5,933,779 + Psyr_5003 0.29 +0.5 5,933,779 + Psyr_5003 0.29 +0.2 5,933,779 + Psyr_5003 0.29 +1.0 5,933,779 + Psyr_5003 0.29 -0.3 5,933,780 - Psyr_5003 0.30 +0.1 5,933,780 - Psyr_5003 0.30 +1.3 5,933,780 - Psyr_5003 0.30 -0.7 5,933,780 - Psyr_5003 0.30 +0.4 5,933,780 - Psyr_5003 0.30 -0.3 5,933,807 + Psyr_5003 0.33 -0.8 5,933,807 + Psyr_5003 0.33 +0.6 5,933,807 + Psyr_5003 0.33 +0.5 5,933,807 + Psyr_5003 0.33 -0.0 5,933,808 - Psyr_5003 0.33 +0.0 5,933,808 - Psyr_5003 0.33 +0.0 5,933,808 - Psyr_5003 0.33 +0.0 5,933,808 - Psyr_5003 0.33 +0.2 5,933,948 - Psyr_5003 0.51 +0.8 5,934,189 + Psyr_5003 0.81 +0.3 5,934,189 + Psyr_5003 0.81 -0.5 5,934,189 + Psyr_5003 0.81 -0.7 5,934,189 + Psyr_5003 0.81 -2.0 5,934,189 + Psyr_5003 0.81 -0.5 5,934,189 + Psyr_5003 0.81 -1.8 5,934,190 - Psyr_5003 0.81 +0.4 5,934,190 - Psyr_5003 0.81 +1.1 5,934,190 - Psyr_5003 0.81 -0.5 5,934,190 - Psyr_5003 0.81 +0.4 5,934,190 - Psyr_5003 0.81 -0.5 5,934,190 - Psyr_5003 0.81 -0.9 5,934,190 - Psyr_5003 0.81 -0.6 5,934,264 - +0.0 5,934,281 + -0.3 5,934,281 + +0.7 5,934,282 - -0.8 5,934,282 - +0.5 5,934,354 + +0.6 5,934,408 + -1.7 5,934,409 - +1.5 5,934,409 - +0.6 5,934,452 + +1.0 5,934,460 + -0.4 5,934,460 + -0.7 5,934,461 - -1.0 5,934,475 + -0.1 5,934,475 + +1.3 5,934,475 + +0.7 5,934,476 - -0.2 5,934,476 - +1.3 5,934,476 - +0.6 5,934,527 + -1.5 5,934,527 + +0.5 5,934,527 + -0.2 5,934,527 + +1.0 5,934,527 + -0.3 5,934,528 - -0.3 5,934,528 - -0.1 5,934,528 - +0.1 5,934,528 - +0.5 5,934,528 - -0.9 5,934,528 - -0.6 5,934,582 + +0.7 5,934,582 + -0.0 5,934,583 - -1.0 5,934,714 + Psyr_5004 0.12 +0.4 5,934,715 - Psyr_5004 0.12 +0.3 5,934,715 - Psyr_5004 0.12 -0.1 5,934,793 + Psyr_5004 0.16 +0.4 5,934,793 + Psyr_5004 0.16 +0.7 5,934,793 + Psyr_5004 0.16 +0.8 5,934,793 + Psyr_5004 0.16 -0.2 5,934,794 - Psyr_5004 0.16 -1.7 5,934,930 + Psyr_5004 0.23 +0.0 5,934,930 + Psyr_5004 0.23 -1.2 5,934,930 + Psyr_5004 0.23 +0.2 5,934,931 - Psyr_5004 0.23 +1.0 5,934,985 - Psyr_5004 0.26 +0.4 5,935,209 + Psyr_5004 0.37 +0.1 5,935,209 + Psyr_5004 0.37 +0.2 5,935,209 + Psyr_5004 0.37 +0.2 5,935,209 + Psyr_5004 0.37 -0.4 5,935,209 + Psyr_5004 0.37 -0.2 5,935,209 + Psyr_5004 0.37 -1.2 5,935,209 + Psyr_5004 0.37 -0.7 5,935,209 + Psyr_5004 0.37 -0.4 5,935,210 - Psyr_5004 0.37 +0.4 5,935,210 - Psyr_5004 0.37 +1.4 5,935,210 - Psyr_5004 0.37 -0.3 5,935,210 - Psyr_5004 0.37 +1.0 5,935,210 - Psyr_5004 0.37 +1.0 5,935,210 - Psyr_5004 0.37 +0.5 5,935,210 - Psyr_5004 0.37 -0.1 5,935,318 - Psyr_5004 0.42 -0.3 5,935,318 - Psyr_5004 0.42 +0.2 5,935,377 + Psyr_5004 0.45 -2.0 5,935,377 + Psyr_5004 0.45 -2.3 5,935,377 + Psyr_5004 0.45 +0.2 5,935,378 - Psyr_5004 0.45 +0.2 5,935,378 - Psyr_5004 0.45 +0.7 5,935,710 + Psyr_5004 0.62 -2.0 5,935,710 + Psyr_5004 0.62 -0.2 5,935,710 + Psyr_5004 0.62 -0.5 5,935,710 + Psyr_5004 0.62 +0.6 5,935,710 + Psyr_5004 0.62 +0.5 5,935,711 - Psyr_5004 0.62 +0.3 5,935,711 - Psyr_5004 0.62 -0.3 5,935,711 - Psyr_5004 0.62 -0.9 5,935,711 - Psyr_5004 0.62 -0.5 5,936,481 + -0.6 5,936,506 + +0.0 5,936,507 - -0.3 5,936,507 - -0.5 5,936,545 - +0.3 5,936,641 - +1.9 5,936,641 - -1.0 5,936,909 - Psyr_5005 0.23 -0.7 5,937,085 + Psyr_5005 0.35 +1.3 5,937,093 + Psyr_5005 0.35 -0.5 5,937,093 + Psyr_5005 0.35 -1.4 5,937,094 - Psyr_5005 0.35 -0.2 5,937,094 - Psyr_5005 0.35 -1.3 5,937,094 - Psyr_5005 0.35 -1.1 5,937,103 - Psyr_5005 0.36 +0.4 5,937,103 - Psyr_5005 0.36 -1.0 5,937,201 + Psyr_5005 0.42 -1.4 5,937,201 + Psyr_5005 0.42 +0.7 5,937,201 + Psyr_5005 0.42 +1.8 5,937,201 + Psyr_5005 0.42 -1.3 5,937,201 + Psyr_5005 0.42 +0.3 5,937,202 - Psyr_5005 0.42 +0.9 5,937,202 - Psyr_5005 0.42 -0.4 5,937,202 - Psyr_5005 0.42 -0.5 5,937,202 - Psyr_5005 0.42 +0.5 5,937,337 - Psyr_5005 0.51 -1.0 5,937,337 - Psyr_5005 0.51 +1.0 5,937,337 - Psyr_5005 0.51 +0.0 5,937,359 - Psyr_5005 0.52 +0.7
Or see this region's nucleotide sequence