Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19105

Experiment: nitrogen source nitrate 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19095 and ABZR87_RS19100 are separated by 81 nucleotidesABZR87_RS19100 and ABZR87_RS19105 are separated by 41 nucleotidesABZR87_RS19105 and ABZR87_RS19110 are separated by 1 nucleotides ABZR87_RS19095: ABZR87_RS19095 - gluconate:H+ symporter, at 644,907 to 646,259 _RS19095 ABZR87_RS19100: ABZR87_RS19100 - RidA family protein, at 646,341 to 646,727 _RS19100 ABZR87_RS19105: ABZR87_RS19105 - amidohydrolase family protein, at 646,769 to 648,265 _RS19105 ABZR87_RS19110: ABZR87_RS19110 - MurR/RpiR family transcriptional regulator, at 648,267 to 649,136 _RS19110 Position (kb) 646 647 648 649Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 646.195 kb on + strandat 646.233 kb on + strandat 646.234 kb on - strandat 646.279 kb on + strandat 646.279 kb on + strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.354 kb on + strandat 646.439 kb on - strand, within ABZR87_RS19100at 646.439 kb on - strand, within ABZR87_RS19100at 646.731 kb on + strandat 646.731 kb on + strandat 646.873 kb on - strandat 646.989 kb on + strand, within ABZR87_RS19105at 646.989 kb on + strand, within ABZR87_RS19105at 646.990 kb on - strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.101 kb on - strand, within ABZR87_RS19105at 647.101 kb on - strand, within ABZR87_RS19105at 647.232 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.410 kb on - strand, within ABZR87_RS19105at 647.410 kb on - strand, within ABZR87_RS19105at 647.614 kb on - strand, within ABZR87_RS19105at 647.689 kb on - strand, within ABZR87_RS19105at 647.877 kb on + strand, within ABZR87_RS19105at 647.877 kb on + strand, within ABZR87_RS19105at 648.064 kb on + strand, within ABZR87_RS19105at 648.064 kb on + strand, within ABZR87_RS19105at 648.065 kb on - strand, within ABZR87_RS19105at 648.065 kb on - strand, within ABZR87_RS19105at 648.319 kb on + strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.333 kb on + strandat 648.334 kb on - strandat 648.529 kb on + strand, within ABZR87_RS19110at 648.567 kb on + strand, within ABZR87_RS19110at 648.568 kb on - strand, within ABZR87_RS19110at 648.568 kb on - strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.915 kb on + strand, within ABZR87_RS19110at 648.915 kb on - strand, within ABZR87_RS19110at 648.916 kb on - strand, within ABZR87_RS19110at 648.916 kb on - strand, within ABZR87_RS19110at 649.148 kb on + strandat 649.148 kb on + strandat 649.148 kb on + strandat 649.149 kb on - strandat 649.149 kb on - strandat 649.215 kb on + strandat 649.247 kb on + strandat 649.247 kb on + strandat 649.248 kb on - strandat 649.248 kb on - strandat 649.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM
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646,195 + -4.6
646,233 + -2.0
646,234 - -1.0
646,279 + -3.1
646,279 + +0.1
646,280 - +1.8
646,280 - +1.1
646,280 - -2.8
646,280 - -0.1
646,280 - -4.0
646,354 + -1.2
646,439 - ABZR87_RS19100 0.25 +0.3
646,439 - ABZR87_RS19100 0.25 +0.6
646,731 + -0.6
646,731 + -3.2
646,873 - -2.8
646,989 + ABZR87_RS19105 0.15 -1.8
646,989 + ABZR87_RS19105 0.15 -2.4
646,990 - ABZR87_RS19105 0.15 -0.0
647,097 + ABZR87_RS19105 0.22 -3.9
647,097 + ABZR87_RS19105 0.22 -2.0
647,097 + ABZR87_RS19105 0.22 -3.1
647,097 + ABZR87_RS19105 0.22 -2.3
647,098 - ABZR87_RS19105 0.22 -0.4
647,098 - ABZR87_RS19105 0.22 +0.2
647,098 - ABZR87_RS19105 0.22 +0.1
647,101 - ABZR87_RS19105 0.22 +0.6
647,101 - ABZR87_RS19105 0.22 +0.7
647,232 + ABZR87_RS19105 0.31 -4.0
647,409 + ABZR87_RS19105 0.43 -3.7
647,409 + ABZR87_RS19105 0.43 -2.6
647,409 + ABZR87_RS19105 0.43 -4.0
647,409 + ABZR87_RS19105 0.43 -3.2
647,410 - ABZR87_RS19105 0.43 +0.7
647,410 - ABZR87_RS19105 0.43 -1.2
647,614 - ABZR87_RS19105 0.56 +0.8
647,689 - ABZR87_RS19105 0.61 +0.4
647,877 + ABZR87_RS19105 0.74 -3.5
647,877 + ABZR87_RS19105 0.74 -3.7
648,064 + ABZR87_RS19105 0.87 -2.1
648,064 + ABZR87_RS19105 0.87 -4.1
648,065 - ABZR87_RS19105 0.87 +0.9
648,065 - ABZR87_RS19105 0.87 -0.6
648,319 + -5.6
648,320 - +0.4
648,320 - +1.0
648,320 - +0.3
648,320 - +0.0
648,333 + -5.1
648,334 - +1.3
648,529 + ABZR87_RS19110 0.30 -3.2
648,567 + ABZR87_RS19110 0.34 -2.9
648,568 - ABZR87_RS19110 0.35 -0.3
648,568 - ABZR87_RS19110 0.35 +0.2
648,652 + ABZR87_RS19110 0.44 -1.0
648,652 + ABZR87_RS19110 0.44 -0.1
648,652 + ABZR87_RS19110 0.44 +1.0
648,652 + ABZR87_RS19110 0.44 +0.5
648,652 + ABZR87_RS19110 0.44 -1.4
648,652 + ABZR87_RS19110 0.44 -1.8
648,652 + ABZR87_RS19110 0.44 -0.5
648,653 - ABZR87_RS19110 0.44 +0.6
648,653 - ABZR87_RS19110 0.44 +0.8
648,653 - ABZR87_RS19110 0.44 -0.4
648,653 - ABZR87_RS19110 0.44 +0.0
648,653 - ABZR87_RS19110 0.44 +0.2
648,653 - ABZR87_RS19110 0.44 +2.1
648,653 - ABZR87_RS19110 0.44 +1.8
648,653 - ABZR87_RS19110 0.44 +0.2
648,653 - ABZR87_RS19110 0.44 +0.4
648,653 - ABZR87_RS19110 0.44 -0.7
648,653 - ABZR87_RS19110 0.44 +0.8
648,653 - ABZR87_RS19110 0.44 -0.8
648,915 + ABZR87_RS19110 0.74 -2.4
648,915 - ABZR87_RS19110 0.74 +0.2
648,916 - ABZR87_RS19110 0.75 +2.0
648,916 - ABZR87_RS19110 0.75 +0.2
649,148 + -4.4
649,148 + -2.0
649,148 + -2.7
649,149 - +0.2
649,149 - +0.2
649,215 + -2.0
649,247 + +0.0
649,247 + +0.0
649,248 - +0.4
649,248 - +0.7
649,248 - +2.6

Or see this region's nucleotide sequence