Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17305

Experiment: nitrogen source nitrate 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17295 and ABZR87_RS17300 are separated by 215 nucleotidesABZR87_RS17300 and ABZR87_RS17305 are separated by 13 nucleotidesABZR87_RS17305 and ABZR87_RS17310 are separated by 90 nucleotidesABZR87_RS17310 and ABZR87_RS17315 are separated by 116 nucleotides ABZR87_RS17295: ABZR87_RS17295 - PAS domain-containing methyl-accepting chemotaxis protein, at 238,478 to 240,067 _RS17295 ABZR87_RS17300: ABZR87_RS17300 - hypothetical protein, at 240,283 to 240,534 _RS17300 ABZR87_RS17305: ABZR87_RS17305 - siderophore-interacting protein, at 240,548 to 241,369 _RS17305 ABZR87_RS17310: ABZR87_RS17310 - PadR family transcriptional regulator, at 241,460 to 242,128 _RS17310 ABZR87_RS17315: ABZR87_RS17315 - MarR family transcriptional regulator, at 242,245 to 242,763 _RS17315 Position (kb) 240 241 242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 239.649 kb on + strand, within ABZR87_RS17295at 239.650 kb on - strand, within ABZR87_RS17295at 239.650 kb on - strand, within ABZR87_RS17295at 239.650 kb on - strand, within ABZR87_RS17295at 239.650 kb on - strand, within ABZR87_RS17295at 239.677 kb on + strand, within ABZR87_RS17295at 239.679 kb on + strand, within ABZR87_RS17295at 239.679 kb on + strand, within ABZR87_RS17295at 239.679 kb on + strand, within ABZR87_RS17295at 239.680 kb on - strand, within ABZR87_RS17295at 239.680 kb on - strand, within ABZR87_RS17295at 239.680 kb on - strand, within ABZR87_RS17295at 239.680 kb on - strand, within ABZR87_RS17295at 239.734 kb on + strand, within ABZR87_RS17295at 239.734 kb on + strand, within ABZR87_RS17295at 239.734 kb on + strand, within ABZR87_RS17295at 239.734 kb on + strand, within ABZR87_RS17295at 239.734 kb on + strand, within ABZR87_RS17295at 239.735 kb on - strand, within ABZR87_RS17295at 239.735 kb on - strand, within ABZR87_RS17295at 239.735 kb on - strand, within ABZR87_RS17295at 239.737 kb on - strand, within ABZR87_RS17295at 239.737 kb on - strand, within ABZR87_RS17295at 239.737 kb on - strand, within ABZR87_RS17295at 239.790 kb on + strand, within ABZR87_RS17295at 239.790 kb on + strand, within ABZR87_RS17295at 239.790 kb on + strand, within ABZR87_RS17295at 239.791 kb on - strand, within ABZR87_RS17295at 240.012 kb on + strandat 240.012 kb on + strandat 240.013 kb on - strandat 240.096 kb on + strandat 240.163 kb on + strandat 240.164 kb on - strandat 240.236 kb on + strandat 240.236 kb on + strandat 240.236 kb on + strandat 240.237 kb on - strandat 240.237 kb on - strandat 240.237 kb on - strandat 240.237 kb on - strandat 240.237 kb on - strandat 240.237 kb on - strandat 240.601 kb on - strandat 240.601 kb on - strandat 240.861 kb on + strand, within ABZR87_RS17305at 240.861 kb on + strand, within ABZR87_RS17305at 240.861 kb on + strand, within ABZR87_RS17305at 240.861 kb on + strand, within ABZR87_RS17305at 240.861 kb on + strand, within ABZR87_RS17305at 240.862 kb on - strand, within ABZR87_RS17305at 240.862 kb on - strand, within ABZR87_RS17305at 240.862 kb on - strand, within ABZR87_RS17305at 240.862 kb on - strand, within ABZR87_RS17305at 241.128 kb on + strand, within ABZR87_RS17305at 241.128 kb on + strand, within ABZR87_RS17305at 241.128 kb on + strand, within ABZR87_RS17305at 241.128 kb on + strand, within ABZR87_RS17305at 241.129 kb on - strand, within ABZR87_RS17305at 241.129 kb on - strand, within ABZR87_RS17305at 241.129 kb on - strand, within ABZR87_RS17305at 241.129 kb on - strand, within ABZR87_RS17305at 241.129 kb on - strand, within ABZR87_RS17305at 241.244 kb on - strand, within ABZR87_RS17305at 241.244 kb on - strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.370 kb on - strandat 241.370 kb on - strandat 241.370 kb on - strandat 241.370 kb on - strandat 241.370 kb on - strandat 241.461 kb on + strandat 241.493 kb on + strandat 241.493 kb on + strandat 241.494 kb on - strandat 241.494 kb on - strandat 241.494 kb on - strandat 241.758 kb on + strand, within ABZR87_RS17310at 241.759 kb on - strand, within ABZR87_RS17310at 241.812 kb on + strand, within ABZR87_RS17310at 241.812 kb on + strand, within ABZR87_RS17310at 241.813 kb on - strand, within ABZR87_RS17310at 241.827 kb on + strand, within ABZR87_RS17310at 241.851 kb on + strand, within ABZR87_RS17310at 241.851 kb on + strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.893 kb on + strand, within ABZR87_RS17310at 241.894 kb on - strand, within ABZR87_RS17310at 242.158 kb on - strandat 242.158 kb on - strandat 242.159 kb on + strandat 242.165 kb on - strandat 242.284 kb on + strandat 242.284 kb on + strandat 242.285 kb on - strandat 242.285 kb on - strandat 242.299 kb on + strand, within ABZR87_RS17315at 242.299 kb on + strand, within ABZR87_RS17315at 242.299 kb on + strand, within ABZR87_RS17315at 242.300 kb on - strand, within ABZR87_RS17315

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM
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239,649 + ABZR87_RS17295 0.74 -1.1
239,650 - ABZR87_RS17295 0.74 -0.4
239,650 - ABZR87_RS17295 0.74 -0.7
239,650 - ABZR87_RS17295 0.74 -1.9
239,650 - ABZR87_RS17295 0.74 -0.7
239,677 + ABZR87_RS17295 0.75 -1.5
239,679 + ABZR87_RS17295 0.76 -3.9
239,679 + ABZR87_RS17295 0.76 +1.9
239,679 + ABZR87_RS17295 0.76 +0.0
239,680 - ABZR87_RS17295 0.76 -1.2
239,680 - ABZR87_RS17295 0.76 -0.6
239,680 - ABZR87_RS17295 0.76 +0.4
239,680 - ABZR87_RS17295 0.76 +0.0
239,734 + ABZR87_RS17295 0.79 -0.1
239,734 + ABZR87_RS17295 0.79 +1.3
239,734 + ABZR87_RS17295 0.79 +0.8
239,734 + ABZR87_RS17295 0.79 +0.3
239,734 + ABZR87_RS17295 0.79 +0.2
239,735 - ABZR87_RS17295 0.79 +1.4
239,735 - ABZR87_RS17295 0.79 +0.4
239,735 - ABZR87_RS17295 0.79 -0.2
239,737 - ABZR87_RS17295 0.79 +0.1
239,737 - ABZR87_RS17295 0.79 -0.2
239,737 - ABZR87_RS17295 0.79 +0.3
239,790 + ABZR87_RS17295 0.83 +1.8
239,790 + ABZR87_RS17295 0.83 +0.4
239,790 + ABZR87_RS17295 0.83 +0.8
239,791 - ABZR87_RS17295 0.83 -0.4
240,012 + -1.1
240,012 + -0.5
240,013 - -0.8
240,096 + +0.9
240,163 + +0.5
240,164 - -0.6
240,236 + +0.9
240,236 + -4.0
240,236 + -1.1
240,237 - -3.1
240,237 - -1.8
240,237 - -3.2
240,237 - +0.4
240,237 - -1.1
240,237 - +0.7
240,601 - +2.6
240,601 - -0.3
240,861 + ABZR87_RS17305 0.38 +0.0
240,861 + ABZR87_RS17305 0.38 +1.9
240,861 + ABZR87_RS17305 0.38 +4.2
240,861 + ABZR87_RS17305 0.38 -1.0
240,861 + ABZR87_RS17305 0.38 +2.9
240,862 - ABZR87_RS17305 0.38 -1.0
240,862 - ABZR87_RS17305 0.38 +0.4
240,862 - ABZR87_RS17305 0.38 -0.9
240,862 - ABZR87_RS17305 0.38 +0.4
241,128 + ABZR87_RS17305 0.71 +0.9
241,128 + ABZR87_RS17305 0.71 +0.5
241,128 + ABZR87_RS17305 0.71 -1.6
241,128 + ABZR87_RS17305 0.71 +0.1
241,129 - ABZR87_RS17305 0.71 +0.4
241,129 - ABZR87_RS17305 0.71 +1.0
241,129 - ABZR87_RS17305 0.71 +0.7
241,129 - ABZR87_RS17305 0.71 +0.3
241,129 - ABZR87_RS17305 0.71 -0.0
241,244 - ABZR87_RS17305 0.85 -0.2
241,244 - ABZR87_RS17305 0.85 +0.2
241,276 + ABZR87_RS17305 0.89 -1.3
241,276 + ABZR87_RS17305 0.89 +0.9
241,276 + ABZR87_RS17305 0.89 +1.4
241,276 + ABZR87_RS17305 0.89 -2.2
241,276 + ABZR87_RS17305 0.89 -0.3
241,276 + ABZR87_RS17305 0.89 +1.0
241,277 - ABZR87_RS17305 0.89 -1.0
241,277 - ABZR87_RS17305 0.89 +0.6
241,277 - ABZR87_RS17305 0.89 +0.2
241,277 - ABZR87_RS17305 0.89 +1.9
241,277 - ABZR87_RS17305 0.89 -1.1
241,277 - ABZR87_RS17305 0.89 +0.1
241,277 - ABZR87_RS17305 0.89 +1.4
241,369 + -0.5
241,369 + +0.5
241,369 + +0.5
241,369 + +0.5
241,369 + +0.6
241,369 + +1.5
241,369 + +0.6
241,369 + -0.1
241,369 + +0.7
241,370 - +0.5
241,370 - +0.5
241,370 - -2.8
241,370 - -1.1
241,370 - +0.5
241,461 + -0.1
241,493 + -1.1
241,493 + -1.7
241,494 - +0.4
241,494 - -2.8
241,494 - -1.8
241,758 + ABZR87_RS17310 0.45 -0.2
241,759 - ABZR87_RS17310 0.45 +1.2
241,812 + ABZR87_RS17310 0.53 -1.2
241,812 + ABZR87_RS17310 0.53 -1.5
241,813 - ABZR87_RS17310 0.53 -1.6
241,827 + ABZR87_RS17310 0.55 -0.9
241,851 + ABZR87_RS17310 0.58 +0.6
241,851 + ABZR87_RS17310 0.58 -2.4
241,852 - ABZR87_RS17310 0.59 -1.2
241,852 - ABZR87_RS17310 0.59 -3.6
241,852 - ABZR87_RS17310 0.59 -1.2
241,852 - ABZR87_RS17310 0.59 +0.7
241,893 + ABZR87_RS17310 0.65 +0.6
241,894 - ABZR87_RS17310 0.65 -3.1
242,158 - -2.3
242,158 - +1.6
242,159 + -1.4
242,165 - -1.8
242,284 + +1.8
242,284 + +1.5
242,285 - -1.1
242,285 - +1.0
242,299 + ABZR87_RS17315 0.10 +0.0
242,299 + ABZR87_RS17315 0.10 +0.9
242,299 + ABZR87_RS17315 0.10 +0.0
242,300 - ABZR87_RS17315 0.11 -1.5

Or see this region's nucleotide sequence