Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01525

Experiment: nitrogen source nitrate 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01520 and ABZR87_RS01525 are separated by 16 nucleotidesABZR87_RS01525 and ABZR87_RS01530 are separated by 25 nucleotidesABZR87_RS01530 and ABZR87_RS01535 are separated by 2 nucleotides ABZR87_RS01520: ABZR87_RS01520 - IlvD/Edd family dehydratase, at 318,996 to 320,732 _RS01520 ABZR87_RS01525: ABZR87_RS01525 - MFS transporter, at 320,749 to 322,074 _RS01525 ABZR87_RS01530: ABZR87_RS01530 - dihydrodipicolinate synthase family protein, at 322,100 to 323,029 _RS01530 ABZR87_RS01535: ABZR87_RS01535 - Gfo/Idh/MocA family oxidoreductase, at 323,032 to 323,970 _RS01535 Position (kb) 320 321 322 323Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.957 kb on - strand, within ABZR87_RS01520at 319.957 kb on - strand, within ABZR87_RS01520at 319.957 kb on - strand, within ABZR87_RS01520at 319.959 kb on + strand, within ABZR87_RS01520at 319.959 kb on + strand, within ABZR87_RS01520at 320.250 kb on + strand, within ABZR87_RS01520at 320.250 kb on + strand, within ABZR87_RS01520at 320.250 kb on + strand, within ABZR87_RS01520at 320.251 kb on - strand, within ABZR87_RS01520at 320.251 kb on - strand, within ABZR87_RS01520at 320.440 kb on - strand, within ABZR87_RS01520at 320.592 kb on + strandat 320.593 kb on - strandat 320.593 kb on - strandat 320.640 kb on + strandat 320.640 kb on + strandat 320.641 kb on - strandat 320.641 kb on - strandat 320.860 kb on + strandat 320.860 kb on + strandat 320.861 kb on - strandat 320.861 kb on - strandat 320.861 kb on - strandat 320.872 kb on + strandat 320.872 kb on + strandat 320.872 kb on + strandat 320.872 kb on + strandat 320.873 kb on - strandat 320.873 kb on - strandat 320.874 kb on + strandat 320.874 kb on + strandat 320.875 kb on - strandat 320.889 kb on - strand, within ABZR87_RS01525at 320.924 kb on + strand, within ABZR87_RS01525at 320.924 kb on + strand, within ABZR87_RS01525at 320.924 kb on + strand, within ABZR87_RS01525at 320.944 kb on + strand, within ABZR87_RS01525at 320.977 kb on + strand, within ABZR87_RS01525at 320.977 kb on + strand, within ABZR87_RS01525at 320.978 kb on - strand, within ABZR87_RS01525at 320.985 kb on - strand, within ABZR87_RS01525at 321.109 kb on + strand, within ABZR87_RS01525at 321.109 kb on + strand, within ABZR87_RS01525at 321.109 kb on + strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.166 kb on + strand, within ABZR87_RS01525at 321.167 kb on - strand, within ABZR87_RS01525at 321.373 kb on - strand, within ABZR87_RS01525at 321.463 kb on + strand, within ABZR87_RS01525at 321.463 kb on + strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.560 kb on - strand, within ABZR87_RS01525at 321.643 kb on + strand, within ABZR87_RS01525at 321.644 kb on - strand, within ABZR87_RS01525at 321.644 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525at 321.820 kb on + strand, within ABZR87_RS01525at 321.820 kb on + strand, within ABZR87_RS01525at 321.820 kb on + strand, within ABZR87_RS01525at 321.821 kb on - strand, within ABZR87_RS01525at 321.821 kb on - strand, within ABZR87_RS01525at 321.925 kb on + strand, within ABZR87_RS01525at 321.925 kb on + strand, within ABZR87_RS01525at 321.937 kb on + strand, within ABZR87_RS01525at 321.937 kb on + strand, within ABZR87_RS01525at 321.938 kb on - strand, within ABZR87_RS01525at 321.988 kb on + strandat 322.358 kb on + strand, within ABZR87_RS01530at 322.358 kb on + strand, within ABZR87_RS01530at 322.358 kb on + strand, within ABZR87_RS01530at 322.359 kb on - strand, within ABZR87_RS01530at 322.475 kb on + strand, within ABZR87_RS01530at 322.476 kb on - strand, within ABZR87_RS01530at 322.511 kb on - strand, within ABZR87_RS01530at 322.604 kb on + strand, within ABZR87_RS01530at 322.760 kb on + strand, within ABZR87_RS01530at 322.829 kb on + strand, within ABZR87_RS01530at 322.829 kb on + strand, within ABZR87_RS01530at 322.830 kb on - strand, within ABZR87_RS01530at 322.830 kb on - strand, within ABZR87_RS01530

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM
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319,956 + ABZR87_RS01520 0.55 +0.2
319,956 + ABZR87_RS01520 0.55 +0.6
319,956 + ABZR87_RS01520 0.55 -1.1
319,956 + ABZR87_RS01520 0.55 -1.4
319,956 + ABZR87_RS01520 0.55 -0.9
319,956 + ABZR87_RS01520 0.55 +1.2
319,956 + ABZR87_RS01520 0.55 +0.1
319,956 + ABZR87_RS01520 0.55 +0.6
319,956 + ABZR87_RS01520 0.55 +1.4
319,956 + ABZR87_RS01520 0.55 +0.8
319,957 - ABZR87_RS01520 0.55 -0.1
319,957 - ABZR87_RS01520 0.55 +2.0
319,957 - ABZR87_RS01520 0.55 -4.3
319,959 + ABZR87_RS01520 0.55 -1.0
319,959 + ABZR87_RS01520 0.55 +1.3
320,250 + ABZR87_RS01520 0.72 +0.9
320,250 + ABZR87_RS01520 0.72 +1.0
320,250 + ABZR87_RS01520 0.72 -0.8
320,251 - ABZR87_RS01520 0.72 +1.0
320,251 - ABZR87_RS01520 0.72 +0.0
320,440 - ABZR87_RS01520 0.83 -0.7
320,592 + +0.6
320,593 - -1.8
320,593 - -0.1
320,640 + +0.2
320,640 + -0.0
320,641 - -0.7
320,641 - -0.6
320,860 + -3.3
320,860 + -0.2
320,861 - -4.3
320,861 - -1.3
320,861 - -0.2
320,872 + -1.0
320,872 + -0.4
320,872 + -1.1
320,872 + -0.0
320,873 - +1.0
320,873 - +1.7
320,874 + -0.4
320,874 + +0.7
320,875 - -1.1
320,889 - ABZR87_RS01525 0.11 +0.0
320,924 + ABZR87_RS01525 0.13 +0.0
320,924 + ABZR87_RS01525 0.13 -0.4
320,924 + ABZR87_RS01525 0.13 -0.4
320,944 + ABZR87_RS01525 0.15 +1.4
320,977 + ABZR87_RS01525 0.17 -0.7
320,977 + ABZR87_RS01525 0.17 -0.9
320,978 - ABZR87_RS01525 0.17 -0.9
320,985 - ABZR87_RS01525 0.18 +0.1
321,109 + ABZR87_RS01525 0.27 -0.4
321,109 + ABZR87_RS01525 0.27 +0.3
321,109 + ABZR87_RS01525 0.27 -0.5
321,110 - ABZR87_RS01525 0.27 +0.0
321,110 - ABZR87_RS01525 0.27 -0.1
321,110 - ABZR87_RS01525 0.27 -0.0
321,110 - ABZR87_RS01525 0.27 +0.2
321,152 - ABZR87_RS01525 0.30 +0.6
321,152 - ABZR87_RS01525 0.30 +0.0
321,152 - ABZR87_RS01525 0.30 +0.2
321,166 + ABZR87_RS01525 0.31 -0.0
321,167 - ABZR87_RS01525 0.32 +1.7
321,373 - ABZR87_RS01525 0.47 +0.6
321,463 + ABZR87_RS01525 0.54 -2.9
321,463 + ABZR87_RS01525 0.54 -0.2
321,464 - ABZR87_RS01525 0.54 +0.7
321,464 - ABZR87_RS01525 0.54 -0.5
321,464 - ABZR87_RS01525 0.54 +0.6
321,559 + ABZR87_RS01525 0.61 +0.7
321,559 + ABZR87_RS01525 0.61 +0.0
321,559 + ABZR87_RS01525 0.61 +0.7
321,559 + ABZR87_RS01525 0.61 +0.1
321,559 + ABZR87_RS01525 0.61 +0.3
321,560 - ABZR87_RS01525 0.61 +0.3
321,643 + ABZR87_RS01525 0.67 +1.2
321,644 - ABZR87_RS01525 0.67 +0.4
321,644 - ABZR87_RS01525 0.67 +1.0
321,668 - ABZR87_RS01525 0.69 -0.2
321,668 - ABZR87_RS01525 0.69 +0.1
321,668 - ABZR87_RS01525 0.69 -0.2
321,706 + ABZR87_RS01525 0.72 +1.3
321,706 + ABZR87_RS01525 0.72 +0.7
321,706 + ABZR87_RS01525 0.72 +1.0
321,820 + ABZR87_RS01525 0.81 +0.5
321,820 + ABZR87_RS01525 0.81 -0.5
321,820 + ABZR87_RS01525 0.81 -3.4
321,821 - ABZR87_RS01525 0.81 -0.2
321,821 - ABZR87_RS01525 0.81 +0.5
321,925 + ABZR87_RS01525 0.89 +0.5
321,925 + ABZR87_RS01525 0.89 -0.7
321,937 + ABZR87_RS01525 0.90 -3.0
321,937 + ABZR87_RS01525 0.90 +1.6
321,938 - ABZR87_RS01525 0.90 -0.2
321,988 + +0.3
322,358 + ABZR87_RS01530 0.28 -1.5
322,358 + ABZR87_RS01530 0.28 +0.0
322,358 + ABZR87_RS01530 0.28 -3.4
322,359 - ABZR87_RS01530 0.28 -1.0
322,475 + ABZR87_RS01530 0.40 +1.3
322,476 - ABZR87_RS01530 0.40 -0.5
322,511 - ABZR87_RS01530 0.44 +4.0
322,604 + ABZR87_RS01530 0.54 +0.6
322,760 + ABZR87_RS01530 0.71 -0.5
322,829 + ABZR87_RS01530 0.78 +1.6
322,829 + ABZR87_RS01530 0.78 +0.8
322,830 - ABZR87_RS01530 0.78 +0.2
322,830 - ABZR87_RS01530 0.78 -0.2

Or see this region's nucleotide sequence