Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01475

Experiment: nitrogen source nitrate 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01470 and ABZR87_RS01475 are separated by 17 nucleotidesABZR87_RS01475 and ABZR87_RS01480 are separated by 33 nucleotides ABZR87_RS01470: ABZR87_RS01470 - L-arabinose ABC transporter permease AraH, at 308,791 to 309,798 _RS01470 ABZR87_RS01475: ABZR87_RS01475 - L-arabinose ABC transporter ATP-binding protein AraG, at 309,816 to 311,336 _RS01475 ABZR87_RS01480: ABZR87_RS01480 - arabinose ABC transporter substrate-binding protein, at 311,370 to 312,317 _RS01480 Position (kb) 309 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 308.870 kb on + strandat 308.870 kb on + strandat 308.870 kb on + strandat 308.870 kb on + strandat 308.871 kb on - strandat 308.871 kb on - strandat 308.871 kb on - strandat 309.177 kb on + strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.188 kb on + strand, within ABZR87_RS01470at 309.644 kb on + strand, within ABZR87_RS01470at 309.645 kb on - strand, within ABZR87_RS01470at 310.015 kb on + strand, within ABZR87_RS01475at 310.015 kb on + strand, within ABZR87_RS01475at 310.016 kb on - strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.074 kb on + strand, within ABZR87_RS01475at 310.074 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.509 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.754 kb on - strand, within ABZR87_RS01475at 311.176 kb on + strand, within ABZR87_RS01475at 311.195 kb on + strandat 311.476 kb on + strand, within ABZR87_RS01480at 311.476 kb on + strand, within ABZR87_RS01480at 311.476 kb on + strand, within ABZR87_RS01480at 311.476 kb on + strand, within ABZR87_RS01480at 311.476 kb on + strand, within ABZR87_RS01480at 311.476 kb on + strand, within ABZR87_RS01480at 311.476 kb on + strand, within ABZR87_RS01480at 311.477 kb on - strand, within ABZR87_RS01480at 311.477 kb on - strand, within ABZR87_RS01480at 311.556 kb on - strand, within ABZR87_RS01480at 311.857 kb on + strand, within ABZR87_RS01480at 311.857 kb on + strand, within ABZR87_RS01480at 311.858 kb on - strand, within ABZR87_RS01480

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM
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308,870 + -2.3
308,870 + +3.0
308,870 + -0.1
308,870 + -0.7
308,871 - -2.5
308,871 - +0.4
308,871 - +1.3
309,177 + ABZR87_RS01470 0.38 +1.0
309,178 - ABZR87_RS01470 0.38 +0.3
309,178 - ABZR87_RS01470 0.38 +0.8
309,178 - ABZR87_RS01470 0.38 -0.8
309,178 - ABZR87_RS01470 0.38 +0.4
309,188 + ABZR87_RS01470 0.39 +0.3
309,644 + ABZR87_RS01470 0.85 +0.1
309,645 - ABZR87_RS01470 0.85 +0.1
310,015 + ABZR87_RS01475 0.13 +0.5
310,015 + ABZR87_RS01475 0.13 -1.9
310,016 - ABZR87_RS01475 0.13 -1.5
310,027 + ABZR87_RS01475 0.14 -1.4
310,027 + ABZR87_RS01475 0.14 -1.5
310,027 + ABZR87_RS01475 0.14 +1.1
310,027 + ABZR87_RS01475 0.14 -1.8
310,028 - ABZR87_RS01475 0.14 -0.2
310,028 - ABZR87_RS01475 0.14 +0.3
310,028 - ABZR87_RS01475 0.14 +0.7
310,028 - ABZR87_RS01475 0.14 -1.1
310,028 - ABZR87_RS01475 0.14 +0.7
310,074 + ABZR87_RS01475 0.17 -0.5
310,074 + ABZR87_RS01475 0.17 -2.7
310,201 + ABZR87_RS01475 0.25 +0.9
310,201 + ABZR87_RS01475 0.25 -0.1
310,201 + ABZR87_RS01475 0.25 -0.7
310,201 + ABZR87_RS01475 0.25 -3.4
310,509 + ABZR87_RS01475 0.46 -1.9
310,753 + ABZR87_RS01475 0.62 +0.3
310,753 + ABZR87_RS01475 0.62 -0.2
310,753 + ABZR87_RS01475 0.62 -0.1
310,754 - ABZR87_RS01475 0.62 +0.2
311,176 + ABZR87_RS01475 0.89 +0.6
311,195 + +0.4
311,476 + ABZR87_RS01480 0.11 +0.6
311,476 + ABZR87_RS01480 0.11 +1.0
311,476 + ABZR87_RS01480 0.11 -3.1
311,476 + ABZR87_RS01480 0.11 +0.2
311,476 + ABZR87_RS01480 0.11 -0.7
311,476 + ABZR87_RS01480 0.11 -1.8
311,476 + ABZR87_RS01480 0.11 -0.2
311,477 - ABZR87_RS01480 0.11 -1.3
311,477 - ABZR87_RS01480 0.11 -0.0
311,556 - ABZR87_RS01480 0.20 -1.3
311,857 + ABZR87_RS01480 0.51 +0.3
311,857 + ABZR87_RS01480 0.51 +1.1
311,858 - ABZR87_RS01480 0.51 -0.4

Or see this region's nucleotide sequence