Experiment: nitrogen source nitrate 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00780 and ABZR87_RS00785 are separated by 140 nucleotides ABZR87_RS00785 and ABZR87_RS00790 are separated by 62 nucleotides ABZR87_RS00790 and ABZR87_RS00795 overlap by 4 nucleotides
ABZR87_RS00780: ABZR87_RS00780 - chalcone isomerase family protein, at 157,273 to 157,923
_RS00780
ABZR87_RS00785: ABZR87_RS00785 - tripartite tricarboxylate transporter substrate binding protein BugE, at 158,064 to 159,023
_RS00785
ABZR87_RS00790: ABZR87_RS00790 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 159,086 to 159,562
_RS00790
ABZR87_RS00795: ABZR87_RS00795 - site-specific tyrosine recombinase XerD, at 159,559 to 160,494
_RS00795
Position (kb) 158
159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 157.067 kb on + strand at 157.067 kb on + strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.101 kb on + strand at 157.123 kb on + strand at 157.147 kb on + strand at 157.147 kb on + strand at 157.148 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.172 kb on + strand at 157.172 kb on + strand at 157.173 kb on - strand at 157.180 kb on - strand at 157.182 kb on + strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.251 kb on + strand at 157.251 kb on + strand at 157.257 kb on + strand at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.771 kb on + strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.988 kb on + strand at 157.988 kb on + strand at 157.988 kb on + strand at 157.989 kb on - strand at 157.989 kb on - strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.031 kb on + strand at 158.032 kb on + strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.032 kb on - strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.129 kb on + strand at 158.307 kb on + strand, within ABZR87_RS00785 at 158.307 kb on + strand, within ABZR87_RS00785 at 158.373 kb on + strand, within ABZR87_RS00785 at 158.374 kb on - strand, within ABZR87_RS00785 at 158.463 kb on + strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.506 kb on - strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785 at 158.934 kb on - strand at 158.934 kb on - strand at 158.934 kb on - strand at 158.946 kb on + strand at 158.946 kb on + strand at 158.947 kb on - strand at 159.021 kb on + strand at 159.048 kb on + strand at 159.049 kb on - strand at 159.049 kb on - strand at 159.173 kb on + strand, within ABZR87_RS00790 at 159.174 kb on - strand, within ABZR87_RS00790 at 159.248 kb on + strand, within ABZR87_RS00790 at 159.248 kb on + strand, within ABZR87_RS00790 at 159.249 kb on - strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.319 kb on - strand, within ABZR87_RS00790 at 159.319 kb on - strand, within ABZR87_RS00790 at 159.362 kb on + strand, within ABZR87_RS00790 at 159.362 kb on + strand, within ABZR87_RS00790 at 159.363 kb on - strand, within ABZR87_RS00790 at 159.363 kb on - strand, within ABZR87_RS00790 at 159.506 kb on + strand, within ABZR87_RS00790 at 159.507 kb on - strand, within ABZR87_RS00790 at 159.507 kb on - strand, within ABZR87_RS00790 at 159.558 kb on + strand at 159.558 kb on + strand at 159.558 kb on + strand at 159.559 kb on - strand at 159.673 kb on - strand, within ABZR87_RS00795 at 159.707 kb on - strand, within ABZR87_RS00795 at 159.772 kb on + strand, within ABZR87_RS00795 at 159.772 kb on + strand, within ABZR87_RS00795 at 159.826 kb on - strand, within ABZR87_RS00795
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM remove 157,067 + -0.5 157,067 + -0.3 157,068 - -2.6 157,068 - -0.6 157,068 - +1.0 157,101 + -0.5 157,123 + +0.8 157,147 + -0.1 157,147 + +0.9 157,148 - -0.7 157,170 + +0.5 157,171 - +0.8 157,171 - -0.8 157,172 + -0.4 157,172 + -0.2 157,173 - -0.1 157,180 - +0.5 157,182 + +2.4 157,214 - -0.2 157,214 - +0.4 157,214 - -3.1 157,214 - -0.6 157,214 - +0.0 157,251 + -2.9 157,251 + -1.8 157,257 + -1.0 157,516 + ABZR87_RS00780 0.37 -1.6 157,516 + ABZR87_RS00780 0.37 +0.4 157,516 + ABZR87_RS00780 0.37 -0.7 157,516 + ABZR87_RS00780 0.37 -4.0 157,516 + ABZR87_RS00780 0.37 -0.1 157,517 - ABZR87_RS00780 0.37 +0.4 157,517 - ABZR87_RS00780 0.37 -2.8 157,517 - ABZR87_RS00780 0.37 +0.2 157,517 - ABZR87_RS00780 0.37 -0.0 157,517 - ABZR87_RS00780 0.37 +1.1 157,532 - ABZR87_RS00780 0.40 +0.3 157,532 - ABZR87_RS00780 0.40 -0.2 157,532 - ABZR87_RS00780 0.40 +0.7 157,771 + ABZR87_RS00780 0.76 +0.4 157,847 - ABZR87_RS00780 0.88 -0.2 157,847 - ABZR87_RS00780 0.88 -1.1 157,988 + -0.5 157,988 + -0.1 157,988 + -0.5 157,989 - +0.6 157,989 - -0.3 158,031 + +1.3 158,031 + -1.6 158,031 + +0.4 158,031 + -0.0 158,032 + +0.2 158,032 - +0.5 158,032 - +0.7 158,032 - +1.2 158,032 - -0.9 158,124 + -0.9 158,124 + +1.9 158,124 + -1.0 158,124 + -1.1 158,124 + +0.5 158,124 + -0.6 158,124 + -0.5 158,124 + +1.3 158,125 - -0.8 158,125 - +2.3 158,125 - +0.5 158,125 - +0.1 158,125 - +0.3 158,129 + +0.3 158,307 + ABZR87_RS00785 0.25 +0.9 158,307 + ABZR87_RS00785 0.25 -0.0 158,373 + ABZR87_RS00785 0.32 +0.2 158,374 - ABZR87_RS00785 0.32 +0.7 158,463 + ABZR87_RS00785 0.42 +1.0 158,464 - ABZR87_RS00785 0.42 +0.9 158,464 - ABZR87_RS00785 0.42 +0.9 158,464 - ABZR87_RS00785 0.42 +1.1 158,505 + ABZR87_RS00785 0.46 +0.6 158,505 + ABZR87_RS00785 0.46 +0.4 158,506 - ABZR87_RS00785 0.46 +0.5 158,802 + ABZR87_RS00785 0.77 +0.4 158,802 + ABZR87_RS00785 0.77 +0.3 158,803 - ABZR87_RS00785 0.77 -0.2 158,803 - ABZR87_RS00785 0.77 -0.6 158,934 - +0.9 158,934 - +2.1 158,934 - +0.2 158,946 + +0.1 158,946 + -0.8 158,947 - +0.5 159,021 + +0.8 159,048 + +0.7 159,049 - +0.6 159,049 - -3.1 159,173 + ABZR87_RS00790 0.18 +1.6 159,174 - ABZR87_RS00790 0.18 -0.1 159,248 + ABZR87_RS00790 0.34 -0.1 159,248 + ABZR87_RS00790 0.34 +2.3 159,249 - ABZR87_RS00790 0.34 +1.0 159,251 + ABZR87_RS00790 0.35 +0.1 159,251 + ABZR87_RS00790 0.35 +0.2 159,251 + ABZR87_RS00790 0.35 +1.5 159,252 - ABZR87_RS00790 0.35 +0.2 159,252 - ABZR87_RS00790 0.35 +2.7 159,252 - ABZR87_RS00790 0.35 +0.3 159,252 - ABZR87_RS00790 0.35 +1.1 159,252 - ABZR87_RS00790 0.35 +0.6 159,319 - ABZR87_RS00790 0.49 +0.4 159,319 - ABZR87_RS00790 0.49 +2.2 159,362 + ABZR87_RS00790 0.58 -1.2 159,362 + ABZR87_RS00790 0.58 -0.5 159,363 - ABZR87_RS00790 0.58 -0.2 159,363 - ABZR87_RS00790 0.58 +0.3 159,506 + ABZR87_RS00790 0.88 +1.3 159,507 - ABZR87_RS00790 0.88 -1.5 159,507 - ABZR87_RS00790 0.88 +0.4 159,558 + +0.0 159,558 + -1.0 159,558 + -3.0 159,559 - +0.6 159,673 - ABZR87_RS00795 0.12 +0.7 159,707 - ABZR87_RS00795 0.16 +0.5 159,772 + ABZR87_RS00795 0.23 -1.6 159,772 + ABZR87_RS00795 0.23 -1.9 159,826 - ABZR87_RS00795 0.29 +0.1
Or see this region's nucleotide sequence