Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23180

Experiment: nitrogen source nitrate 20mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS23170 and ABZR87_RS23175 are separated by 11 nucleotidesABZR87_RS23175 and ABZR87_RS23180 overlap by 4 nucleotidesABZR87_RS23180 and ABZR87_RS23185 overlap by 4 nucleotidesABZR87_RS23185 and ABZR87_RS23190 overlap by 1 nucleotides ABZR87_RS23170: ABZR87_RS23170 - Zn-dependent hydrolase, at 1,561,536 to 1,562,789 _RS23170 ABZR87_RS23175: ABZR87_RS23175 - ABC transporter ATP-binding protein, at 1,562,801 to 1,563,517 _RS23175 ABZR87_RS23180: ABZR87_RS23180 - ABC transporter ATP-binding protein, at 1,563,514 to 1,564,284 _RS23180 ABZR87_RS23185: ABZR87_RS23185 - branched-chain amino acid ABC transporter permease, at 1,564,281 to 1,565,249 _RS23185 ABZR87_RS23190: ABZR87_RS23190 - branched-chain amino acid ABC transporter permease, at 1,565,249 to 1,566,106 _RS23190 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -2 -1 0 1 2at 1562.522 kb on + strand, within ABZR87_RS23170at 1562.796 kb on + strandat 1562.797 kb on - strandat 1562.797 kb on - strandat 1562.826 kb on + strandat 1562.826 kb on + strandat 1562.878 kb on - strand, within ABZR87_RS23175at 1562.878 kb on - strand, within ABZR87_RS23175at 1563.165 kb on + strand, within ABZR87_RS23175at 1563.165 kb on + strand, within ABZR87_RS23175at 1563.165 kb on + strand, within ABZR87_RS23175at 1563.472 kb on - strandat 1563.474 kb on + strandat 1563.961 kb on - strand, within ABZR87_RS23180at 1564.059 kb on - strand, within ABZR87_RS23180at 1564.238 kb on + strandat 1564.459 kb on + strand, within ABZR87_RS23185at 1564.459 kb on + strand, within ABZR87_RS23185at 1564.459 kb on + strand, within ABZR87_RS23185at 1564.459 kb on + strand, within ABZR87_RS23185at 1564.460 kb on - strand, within ABZR87_RS23185at 1564.460 kb on - strand, within ABZR87_RS23185at 1564.460 kb on - strand, within ABZR87_RS23185at 1564.543 kb on + strand, within ABZR87_RS23185at 1564.544 kb on - strand, within ABZR87_RS23185at 1564.544 kb on - strand, within ABZR87_RS23185at 1564.551 kb on - strand, within ABZR87_RS23185at 1564.781 kb on - strand, within ABZR87_RS23185at 1564.781 kb on - strand, within ABZR87_RS23185at 1564.864 kb on + strand, within ABZR87_RS23185at 1564.865 kb on - strand, within ABZR87_RS23185at 1564.865 kb on - strand, within ABZR87_RS23185at 1564.877 kb on - strand, within ABZR87_RS23185at 1564.877 kb on - strand, within ABZR87_RS23185at 1564.877 kb on - strand, within ABZR87_RS23185at 1564.915 kb on + strand, within ABZR87_RS23185at 1564.915 kb on + strand, within ABZR87_RS23185at 1564.916 kb on - strand, within ABZR87_RS23185at 1564.916 kb on - strand, within ABZR87_RS23185at 1564.916 kb on - strand, within ABZR87_RS23185at 1564.916 kb on - strand, within ABZR87_RS23185at 1565.041 kb on + strand, within ABZR87_RS23185at 1565.042 kb on - strand, within ABZR87_RS23185at 1565.059 kb on + strand, within ABZR87_RS23185at 1565.092 kb on + strand, within ABZR87_RS23185at 1565.131 kb on + strand, within ABZR87_RS23185at 1565.132 kb on - strand, within ABZR87_RS23185at 1565.139 kb on + strand, within ABZR87_RS23185at 1565.140 kb on - strand, within ABZR87_RS23185at 1565.230 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
remove
1,562,522 + ABZR87_RS23170 0.79 +0.1
1,562,796 + +0.1
1,562,797 - -0.1
1,562,797 - -0.3
1,562,826 + -0.9
1,562,826 + -0.3
1,562,878 - ABZR87_RS23175 0.11 +1.6
1,562,878 - ABZR87_RS23175 0.11 +0.7
1,563,165 + ABZR87_RS23175 0.51 -0.4
1,563,165 + ABZR87_RS23175 0.51 -0.2
1,563,165 + ABZR87_RS23175 0.51 -0.3
1,563,472 - -0.7
1,563,474 + +0.3
1,563,961 - ABZR87_RS23180 0.58 +2.4
1,564,059 - ABZR87_RS23180 0.71 +0.8
1,564,238 + -0.0
1,564,459 + ABZR87_RS23185 0.18 -1.1
1,564,459 + ABZR87_RS23185 0.18 -0.2
1,564,459 + ABZR87_RS23185 0.18 -0.9
1,564,459 + ABZR87_RS23185 0.18 -1.2
1,564,460 - ABZR87_RS23185 0.18 +0.3
1,564,460 - ABZR87_RS23185 0.18 -0.2
1,564,460 - ABZR87_RS23185 0.18 -0.6
1,564,543 + ABZR87_RS23185 0.27 -0.3
1,564,544 - ABZR87_RS23185 0.27 +0.5
1,564,544 - ABZR87_RS23185 0.27 -0.4
1,564,551 - ABZR87_RS23185 0.28 +0.8
1,564,781 - ABZR87_RS23185 0.52 -2.3
1,564,781 - ABZR87_RS23185 0.52 +0.4
1,564,864 + ABZR87_RS23185 0.60 +1.1
1,564,865 - ABZR87_RS23185 0.60 +0.0
1,564,865 - ABZR87_RS23185 0.60 -1.5
1,564,877 - ABZR87_RS23185 0.62 +0.8
1,564,877 - ABZR87_RS23185 0.62 -0.8
1,564,877 - ABZR87_RS23185 0.62 +0.5
1,564,915 + ABZR87_RS23185 0.65 -0.3
1,564,915 + ABZR87_RS23185 0.65 +2.0
1,564,916 - ABZR87_RS23185 0.66 +0.1
1,564,916 - ABZR87_RS23185 0.66 +1.0
1,564,916 - ABZR87_RS23185 0.66 -1.1
1,564,916 - ABZR87_RS23185 0.66 -1.0
1,565,041 + ABZR87_RS23185 0.78 +0.2
1,565,042 - ABZR87_RS23185 0.79 -0.4
1,565,059 + ABZR87_RS23185 0.80 -0.0
1,565,092 + ABZR87_RS23185 0.84 +0.4
1,565,131 + ABZR87_RS23185 0.88 -0.6
1,565,132 - ABZR87_RS23185 0.88 -0.3
1,565,139 + ABZR87_RS23185 0.89 -0.8
1,565,140 - ABZR87_RS23185 0.89 -0.2
1,565,230 - -1.7

Or see this region's nucleotide sequence